NP-MRD: Showing NP-Card for Osthol hydrate (NP0139670)

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Record Information

Version

2.0

Created at

2022-06-29 20:05:08 UTC

Updated at

2022-06-29 20:05:08 UTC

NP-MRD ID

NP0139670

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Osthol hydrate

Description

2'-Deoxymeranzin hydrate belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one). Osthol hydrate is found in Cnidium monnieri. Osthol hydrate was first documented in 2000 (PMID: 10785419). 2'-Deoxymeranzin hydrate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 37 38  0  0  0  0  0  0  0  0999 V2000
    1.5830    2.9767   -0.7042 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7583    2.3282    0.0538 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0432    1.7569    0.8781 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2611    2.3043    2.1519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1072    1.7094    3.0362 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7616    0.5526    2.6791 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6122   -0.0536    3.5572 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2536   -1.2097    3.1743 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0048   -1.7069    1.9091 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5683   -2.7759    1.4915 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1811   -1.0966    1.0943 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5536    0.0144    1.4392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7153    0.5658    0.5071 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4987   -0.0372   -0.8395 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8379   -0.7313   -0.8206 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1996   -1.3892   -2.1108 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2799   -0.4468   -3.2653 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5778   -2.0184   -1.9357 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3396   -2.4281   -2.4578 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2781    3.1419   -1.7964 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8942    4.0028   -0.3181 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5990    2.4416   -0.7455 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2400    3.2141    2.4606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2862    2.1194    4.0234 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7969    0.3497    4.5461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9343   -1.7382    3.8118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3455   -0.7212   -1.0101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5335    0.7987   -1.5643 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8272   -1.4748   -0.0005 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6123    0.0421   -0.6170 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0137   -0.8920   -4.0005 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7381    0.4997   -2.9280 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3157   -0.2950   -3.7927 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5744   -2.5765   -0.9786 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3144   -1.1959   -1.8915 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7791   -2.7130   -2.7779 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6949   -3.3179   -2.2588 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 16 18  1  0
 16 19  1  0
 13  3  1  0
 12  6  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  4 23  1  0
  5 24  1  0
  7 25  1  0
  8 26  1  0
 14 27  1  0
 14 28  1  0
 15 29  1  0
 15 30  1  0
 17 31  1  0
 17 32  1  0
 17 33  1  0
 18 34  1  0
 18 35  1  0
 18 36  1  0
 19 37  1  0
M  END


  Mrv1533004191517102D          

 19 20  0  0  0  0            999 V2000
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
  6 12  1  0  0  0  0
 12 13  2  0  0  0  0
  3 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 16 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0139670

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C2C=CC(=O)OC2=C1CCC(C)(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C15H18O4/c1-15(2,17)9-8-11-12(18-3)6-4-10-5-7-13(16)19-14(10)11/h4-7,17H,8-9H2,1-3H3

> <INCHI_KEY>
FYGJNTORCNKCGZ-UHFFFAOYSA-N

> <FORMULA>
C15H18O4

> <MOLECULAR_WEIGHT>
262.305

> <EXACT_MASS>
262.12050906

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
37

> <JCHEM_AVERAGE_POLARIZABILITY>
27.967088192090046

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
8-(3-hydroxy-3-methylbutyl)-7-methoxy-2H-chromen-2-one

> <ALOGPS_LOGP>
2.79

> <JCHEM_LOGP>
2.2887201453333326

> <ALOGPS_LOGS>
-3.74

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.384857083136762

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6304635118359805

> <JCHEM_POLAR_SURFACE_AREA>
55.760000000000005

> <JCHEM_REFRACTIVITY>
73.24070000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.79e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
8-(3-hydroxy-3-methylbutyl)-7-methoxychromen-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 19-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-APR-15         0                                  
HETATM    1  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       8.002  -3.080   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.334  -8.470   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.206  -6.930   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       2.874  -6.930   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   13                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   12                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11    6   13                                                  
CONECT   13   12    3   14                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18   19                                             
CONECT   17   16                                                            
CONECT   18   16                                                            
CONECT   19   16                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   40    0
END

View in JSmol

Synonyms

Value	Source
2-Deoxymeranzin hydrate	ChEBI
2-Deoxymeranzin hydric acid	Generator
2'-Deoxymeranzin hydric acid	Generator

Chemical Formula

C₁₅H₁₈O₄

Average Mass

262.3050 Da

Monoisotopic Mass

262.12051 Da

IUPAC Name

8-(3-hydroxy-3-methylbutyl)-7-methoxy-2H-chromen-2-one

Traditional Name

8-(3-hydroxy-3-methylbutyl)-7-methoxychromen-2-one

CAS Registry Number

Not Available

SMILES

COC1=CC=C2C=CC(=O)OC2=C1CCC(C)(C)O

InChI Identifier

InChI=1S/C15H18O4/c1-15(2,17)9-8-11-12(18-3)6-4-10-5-7-13(16)19-14(10)11/h4-7,17H,8-9H2,1-3H3

InChI Key

FYGJNTORCNKCGZ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cnidium monnieri	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one).

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Not Available

Direct Parent

Coumarins and derivatives

Alternative Parents

Substituents

Coumarin
Benzopyran
1-benzopyran
Anisole
Phenol ether
Alkyl aryl ether
Pyranone
Pyran
Benzenoid
Tertiary alcohol
Heteroaromatic compound
Lactone
Oxacycle
Ether
Organoheterocyclic compound
Alcohol
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.79	ALOGPS
logP	2.29	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	15.38	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	55.76 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	73.24 m³·mol⁻¹	ChemAxon
Polarizability	27.97 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10659145

PDB ID

Not Available

ChEBI ID

132625

Good Scents ID

Not Available

References

General References

Cai JN, Basnet P, Wang ZT, Komatsu K, Xu LS, Tani T: Coumarins from the fruits of Cnidium monnieri. J Nat Prod. 2000 Apr;63(4):485-8. doi: 10.1021/np990522w. [PubMed:10785419 ]

Showing NP-Card for Osthol hydrate (NP0139670)

MOL for NP0139670 (Osthol hydrate)

3D MOL for NP0139670 (Osthol hydrate)

3D SDF for NP0139670 (Osthol hydrate)

3D-SDF for NP0139670 (Osthol hydrate)

PDB for NP0139670 (Osthol hydrate)

3D PDB for NP0139670 (Osthol hydrate)

SMILES for NP0139670 (Osthol hydrate)

INCHI for NP0139670 (Osthol hydrate)

Structure for NP0139670 (Osthol hydrate)

3D Structure for NP0139670 (Osthol hydrate)