NP-MRD: Showing NP-Card for Reneilmol (NP0139657)

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Record Information

Version

2.0

Created at

2022-06-29 20:04:31 UTC

Updated at

2022-06-29 20:04:31 UTC

NP-MRD ID

NP0139657

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Reneilmol

Description

Reneilmol belongs to the class of organic compounds known as germacrane sesquiterpenoids. These are sesquiterpenoids having the germacrane skeleton, with a structure characterized by a cyclodecane ring substituted with an isopropyl and two methyl groups. Reneilmol is found in Renealmia cincinnata. Based on a literature review very few articles have been published on Reneilmol.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 46 47  0  0  0  0  0  0  0  0999 V2000
    1.9945    2.4800    0.6853 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3916    1.2176    0.0038 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7498    0.8126    0.6111 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5131    0.0448    0.1552 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2117   -1.0763   -0.6529 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1526   -2.1357   -0.5101 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1939   -1.4111   -0.5106 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9076   -1.8941   -1.7434 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2117    0.0368   -0.6119 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7088    1.0645   -0.2390 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7606    2.0696   -1.2433 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1553    0.7506    0.0051 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7848    2.1356    0.2905 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8304    0.3066   -1.1202 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4291   -0.0354    1.2386 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2920   -1.5065    0.9098 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8557   -1.7923    0.7608 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5573   -3.1564    0.9929 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6485    2.3183    1.7284 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3540    3.1638    0.0939 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9406    3.0919    0.8293 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6265    1.4232   -1.0598 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2712    1.7129    1.0150 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5613    0.1633    1.5063 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4071    0.3582   -0.1268 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4275   -0.2836    1.1912 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1592   -1.3621   -0.1912 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2820   -0.7706   -1.7091 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2402   -2.8902   -1.3077 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3609   -2.6663    0.4396 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8690   -1.0460   -2.4884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3716   -2.7244   -2.2472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9282   -2.2459   -1.5794 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5280    0.1581   -1.6945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3675    1.6053    0.6787 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0720    2.1004   -1.7613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8283    1.9685    0.6166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1681    2.6404    1.0871 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7302    2.6722   -0.6686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0805    1.0728   -1.7259 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5982    0.1895    1.9668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3576    0.2073    1.7577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6365   -2.0467    1.8438 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9595   -1.8364    0.1223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3154   -1.2551    1.5904 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4179   -3.6299    1.0710 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  6
  7  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 12 14  1  6
 12 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
  9  4  1  0
 17  7  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
  3 23  1  0
  3 24  1  0
  3 25  1  0
  4 26  1  1
  5 27  1  0
  5 28  1  0
  6 29  1  0
  6 30  1  0
  8 31  1  0
  8 32  1  0
  8 33  1  0
  9 34  1  6
 10 35  1  1
 11 36  1  0
 13 37  1  0
 13 38  1  0
 13 39  1  0
 14 40  1  0
 15 41  1  0
 15 42  1  0
 16 43  1  0
 16 44  1  0
 17 45  1  1
 18 46  1  0
M  END


  Mrv1652306292222042D          

 18 19  0  0  1  0            999 V2000
   -1.3103    0.9225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5033    0.7510    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0487    1.3641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2483   -0.0336    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7333   -0.7011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2483   -1.3685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5363   -1.1136    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5363   -0.2886    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1813    0.2258    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9856    0.0422    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3436   -0.7011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9856   -1.4444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1813   -1.6280    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9977   -2.4323    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1511    0.8505    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7367    0.3834    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9977    1.0301    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3890   -1.9253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  6  0  0  0
  4  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  7 13  1  0  0  0  0
 13 14  1  1  0  0  0
 10 15  1  6  0  0  0
 10 16  1  1  0  0  0
  9 17  1  1  0  0  0
  7 18  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0139657

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@@H]1CC[C@]2(C)[C@H]1[C@@H](O)[C@@](C)(O)CC[C@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C15H28O3/c1-9(2)10-5-7-14(3)11(16)6-8-15(4,18)13(17)12(10)14/h9-13,16-18H,5-8H2,1-4H3/t10-,11+,12+,13+,14-,15-/m0/s1

> <INCHI_KEY>
XUVQJFBJHKRROA-ZYIYBEKCSA-N

> <FORMULA>
C15H28O3

> <MOLECULAR_WEIGHT>
256.386

> <EXACT_MASS>
256.203844762

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
29.74722691409449

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S,3aS,4R,5S,8R,8aR)-5,8a-dimethyl-3-(propan-2-yl)-decahydroazulene-4,5,8-triol

> <ALOGPS_LOGP>
1.70

> <JCHEM_LOGP>
1.6516127849999989

> <ALOGPS_LOGS>
-1.99

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.569952563427282

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.557260230637368

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9329496947410076

> <JCHEM_POLAR_SURFACE_AREA>
60.69

> <JCHEM_REFRACTIVITY>
71.384

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.63e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,3aS,4R,5S,8R,8aR)-3-isopropyl-5,8a-dimethyl-octahydroazulene-4,5,8-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-JUN-22         0                                  
HETATM    1  C   UNK     0      -2.446   1.722   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.939   1.402   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.091   2.546   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.464  -0.063   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.369  -1.309   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.464  -2.555   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.001  -2.079   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.001  -0.539   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.205   0.421   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.706   0.079   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.375  -1.309   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.706  -2.696   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.205  -3.039   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       1.862  -4.540   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       4.015   1.588   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       5.109   0.716   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       1.862   1.923   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       0.726  -3.594   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    8                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   13   18                                             
CONECT    8    7    4    9                                                  
CONECT    9    8   10   17                                                  
CONECT   10    9   11   15   16                                             
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    7   14                                                  
CONECT   14   13                                                            
CONECT   15   10                                                            
CONECT   16   10                                                            
CONECT   17    9                                                            
CONECT   18    7                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₈O₃

Average Mass

256.3860 Da

Monoisotopic Mass

256.20384 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC(C)[C@@H]1CC[C@]2(C)[C@H]1[C@@H](O)[C@@](C)(O)CC[C@H]2O

InChI Identifier

InChI=1S/C15H28O3/c1-9(2)10-5-7-14(3)11(16)6-8-15(4,18)13(17)12(10)14/h9-13,16-18H,5-8H2,1-4H3/t10-,11+,12+,13+,14-,15-/m0/s1

InChI Key

XUVQJFBJHKRROA-ZYIYBEKCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Renealmia cincinnata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacrane sesquiterpenoids. These are sesquiterpenoids having the germacrane skeleton, with a structure characterized by a cyclodecane ring substituted with an isopropyl and two methyl groups.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Germacrane sesquiterpenoids

Alternative Parents

Substituents

Germacrane sesquiterpenoid
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Polyol
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28424503

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

91895383

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Reneilmol (NP0139657)

MOL for NP0139657 (Reneilmol)

3D MOL for NP0139657 (Reneilmol)

3D SDF for NP0139657 (Reneilmol)

3D-SDF for NP0139657 (Reneilmol)

PDB for NP0139657 (Reneilmol)

3D PDB for NP0139657 (Reneilmol)

SMILES for NP0139657 (Reneilmol)

INCHI for NP0139657 (Reneilmol)

Structure for NP0139657 (Reneilmol)

3D Structure for NP0139657 (Reneilmol)