NP-MRD: Showing NP-Card for Danshenxinkun A (NP0139287)

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Record Information

Version

2.0

Created at

2022-06-29 19:47:33 UTC

Updated at

2022-06-29 19:47:33 UTC

NP-MRD ID

NP0139287

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Danshenxinkun A

Description

DANSHENXINKUN A, also known as tanshinone VI, belongs to the class of organic compounds known as tanshinones, isotanshinones, and derivatives. These are a group of abietane-type norditerpenoid quinones. Danshenxinkun A is found in Salvia miltiorrhiza and Salvia przewalskii. DANSHENXINKUN A is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 40  0  0  0  0  0  0  0  0999 V2000
    5.0945    1.0321    0.2760 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1771   -0.1497    0.2445 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6787   -1.4195    0.3459 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8148   -2.4890    0.3143 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4380   -2.3135    0.1812 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9425   -1.0409    0.0802 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5940   -0.7948   -0.0534 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0907    0.5122   -0.1567 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9893    1.5425   -0.1202 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3393    1.3444    0.0114 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8133    0.0582    0.1112 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3484    0.7763   -0.2994 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6832    2.1306   -0.3894 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2428   -0.1758   -0.3390 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6748    0.0949   -0.4824 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4282   -0.4428    0.7433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0732    1.5243   -0.6116 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4917    1.5168   -0.7748 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7977   -1.5541   -0.2378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6067   -2.5313   -0.2685 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3573   -1.8796   -0.0923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0216   -3.0696   -0.0094 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7892    1.7696    1.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0853    1.4515   -0.7478 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1097    0.6850    0.5635 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7530   -1.5359    0.4488 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2446   -3.4795    0.3969 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8378   -3.1822    0.1647 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6426    2.5616   -0.1966 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0482    2.1626    0.0400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4630    2.8006    0.3437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0426   -0.5297   -1.3303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8792   -0.2485    1.6759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4008    0.0872    0.8123 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6857   -1.5238    0.6020 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6311    2.0578   -1.4867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8994    2.1515    0.2752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7553    2.1006   -1.5110 H   0  0  0  0  0  0  0  0  0  0  0  0
 16 15  1  0
 15 17  1  0
 17 18  1  0
 15 14  1  0
 14 12  2  0
 12 13  1  0
 12  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11  2  1  0
  2  1  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7 21  1  0
 21 22  2  0
 21 19  1  0
 19 20  2  0
 19 14  1  0
  7  8  1  0
  6 11  1  0
 16 33  1  0
 16 34  1  0
 16 35  1  0
 15 32  1  6
 17 36  1  0
 17 37  1  0
 18 38  1  0
 13 31  1  0
  9 29  1  0
 10 30  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  3 26  1  0
  4 27  1  0
  5 28  1  0
M  END


  Mrv1533004241500262D          

 22 24  0  0  0  0            999 V2000
    0.7954   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7954   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0296   -1.5395    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  2  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 11 17  1  0  0  0  0
 17 18  2  0  0  0  0
  8 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
  5 21  1  0  0  0  0
 21 22  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0139287

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(CO)C1=C(O)C2=CC=C3C(C)=CC=CC3=C2C(=O)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C18H16O4/c1-9-4-3-5-12-11(9)6-7-13-15(12)18(22)17(21)14(16(13)20)10(2)8-19/h3-7,10,19-20H,8H2,1-2H3

> <INCHI_KEY>
GRGPQNRHXNRJFL-UHFFFAOYSA-N

> <FORMULA>
C18H16O4

> <MOLECULAR_WEIGHT>
296.322

> <EXACT_MASS>
296.104858995

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
31.499719175550837

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1-hydroxy-2-(1-hydroxypropan-2-yl)-8-methyl-3,4-dihydrophenanthrene-3,4-dione

> <ALOGPS_LOGP>
2.21

> <JCHEM_LOGP>
2.7240637716666667

> <ALOGPS_LOGS>
-3.86

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.515204611312566

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.77237507718475

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6192762739189375

> <JCHEM_POLAR_SURFACE_AREA>
74.6

> <JCHEM_REFRACTIVITY>
84.90709999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.05e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-hydroxy-2-(1-hydroxypropan-2-yl)-8-methylphenanthrene-3,4-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0       1.485  -0.206   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.255  -1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.485  -2.874   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -0.055  -2.874   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       3.795  -1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.565  -0.206   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.795   1.127   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       6.105  -0.206   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.875   1.127   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.415   1.127   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.185  -0.206   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.725  -0.206   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.495   1.127   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.495  -1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.725  -2.874   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       9.185  -2.874   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       8.415  -1.540   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.875  -1.540   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.105  -2.874   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       6.875  -4.207   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.565  -2.874   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       3.795  -4.207   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    5                                                  
CONECT    3    2    4                                                       
CONECT    4    3                                                            
CONECT    5    2    6   21                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   18                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   11   18                                                  
CONECT   18   17    8   19                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19    5   22                                                  
CONECT   22   21                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Value	Source
Sodium tanshinone VI 1-phenolate	MeSH
Tanshinone VI	MeSH

Chemical Formula

C₁₈H₁₆O₄

Average Mass

296.3220 Da

Monoisotopic Mass

296.10486 Da

IUPAC Name

1-hydroxy-2-(1-hydroxypropan-2-yl)-8-methyl-3,4-dihydrophenanthrene-3,4-dione

Traditional Name

1-hydroxy-2-(1-hydroxypropan-2-yl)-8-methylphenanthrene-3,4-dione

CAS Registry Number

Not Available

SMILES

CC(CO)C1=C(O)C2=CC=C3C(C)=CC=CC3=C2C(=O)C1=O

InChI Identifier

InChI=1S/C18H16O4/c1-9-4-3-5-12-11(9)6-7-13-15(12)18(22)17(21)14(16(13)20)10(2)8-19/h3-7,10,19-20H,8H2,1-2H3

InChI Key

GRGPQNRHXNRJFL-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Salvia miltiorrhiza	LOTUS Database	35616633
Salvia przewalskii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tanshinones, isotanshinones, and derivatives. These are a group of abietane-type norditerpenoid quinones.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Tanshinones, isotanshinones, and derivatives

Alternative Parents

Substituents

Tanshinone skeleton
Phenanthrol
Hydrophenanthrene
Phenanthrene
Naphthoquinone
1-naphthol
Naphthalene
Aryl ketone
Quinone
Benzenoid
Vinylogous acid
Cyclic ketone
Ketone
Enol
Alcohol
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Primary alcohol
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.21	ALOGPS
logP	2.72	ChemAxon
logS	-3.9	ALOGPS
pKa (Strongest Acidic)	5.77	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	74.6 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	84.91 m³·mol⁻¹	ChemAxon
Polarizability	31.5 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

149138

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Danshenxinkun A (NP0139287)

MOL for NP0139287 (Danshenxinkun A)

3D MOL for NP0139287 (Danshenxinkun A)

3D SDF for NP0139287 (Danshenxinkun A)

3D-SDF for NP0139287 (Danshenxinkun A)

PDB for NP0139287 (Danshenxinkun A)

3D PDB for NP0139287 (Danshenxinkun A)

SMILES for NP0139287 (Danshenxinkun A)

INCHI for NP0139287 (Danshenxinkun A)

Structure for NP0139287 (Danshenxinkun A)

3D Structure for NP0139287 (Danshenxinkun A)