Np mrd loader

Record Information
Version2.0
Created at2022-06-29 19:39:46 UTC
Updated at2022-06-29 19:39:46 UTC
NP-MRD IDNP0139110
Secondary Accession NumbersNone
Natural Product Identification
Common NameKedarcidin
DescriptionKedarcidin belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. Kedarcidin was first documented in 2013 (PMID: 23633564). Based on a literature review a small amount of articles have been published on Kedarcidin (PMID: 23360970) (PMID: 30911163) (PMID: 26177844) (PMID: 23844627).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC53H60ClN3O16
Average Mass1030.5200 Da
Monoisotopic Mass1029.36621 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
COC1=C(OC)C2=CC(C(=O)NC3CC4=NC(Cl)=C(OC5C=C6C#C\C(=C/C#CC7OC67C5OC5CC(C)(O)C(O)C(C)O5)C(COC3=O)OC3CC(O)C(C(C)O3)N(C)C)C=C4)=C(O)C=C2C=C1OC(C)C
InChI Identifier
InChI=1S/C53H60ClN3O16/c1-25(2)67-38-18-29-17-35(58)33(21-32(29)45(64-8)46(38)65-9)50(61)56-34-20-31-15-16-37(49(54)55-31)70-39-19-30-14-13-28(40(24-66-51(34)62)71-42-22-36(59)44(57(6)7)26(3)68-42)11-10-12-41-53(30,73-41)48(39)72-43-23-52(5,63)47(60)27(4)69-43/h11,15-19,21,25-27,34,36,39-44,47-48,58-60,63H,20,22-24H2,1-9H3,(H,56,61)/b28-11+
InChI KeyGFTRTMUGNRZABD-IPBVOBEMSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentAminoglycosides
Alternative Parents
Substituents
  • Aminoglycoside core
  • Alpha-amino acid ester
  • 2-naphthalenecarboxylic acid or derivatives
  • 2-naphthalenecarboxamide
  • N-acyl-alpha amino acid or derivatives
  • O-glycosyl compound
  • 2-naphthol
  • Glycosyl compound
  • Naphthalene
  • Salicylic acid or derivatives
  • Alpha-amino acid or derivatives
  • Anisole
  • Alkyl aryl ether
  • 1-hydroxy-2-unsubstituted benzenoid
  • 2-halopyridine
  • Benzenoid
  • Monosaccharide
  • Pyridine
  • Oxane
  • Aryl halide
  • Aryl chloride
  • Tertiary alcohol
  • Heteroaromatic compound
  • Vinylogous acid
  • 1,2-aminoalcohol
  • Amino acid or derivatives
  • Carboxamide group
  • Carboxylic acid ester
  • Tertiary aliphatic amine
  • Lactone
  • Tertiary amine
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Ether
  • Oxirane
  • Dialkyl ether
  • Acetal
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Oxacycle
  • Organoheterocyclic compound
  • Azacycle
  • Organohalogen compound
  • Carbonyl group
  • Organopnictogen compound
  • Organic oxide
  • Alcohol
  • Amine
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Organochloride
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID4978668
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkKedarcidin
METLIN IDNot Available
PubChem Compound6477354
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Huang SX, Lohman JR, Huang T, Shen B: A new member of the 4-methylideneimidazole-5-one-containing aminomutase family from the enediyne kedarcidin biosynthetic pathway. Proc Natl Acad Sci U S A. 2013 May 14;110(20):8069-74. doi: 10.1073/pnas.1304733110. Epub 2013 Apr 30. [PubMed:23633564 ]
  2. Lohman JR, Huang SX, Horsman GP, Dilfer PE, Huang T, Chen Y, Wendt-Pienkowski E, Shen B: Cloning and sequencing of the kedarcidin biosynthetic gene cluster from Streptoalloteichus sp. ATCC 53650 revealing new insights into biosynthesis of the enediyne family of antitumor antibiotics. Mol Biosyst. 2013 Mar;9(3):478-91. doi: 10.1039/c3mb25523a. Epub 2013 Jan 29. [PubMed:23360970 ]
  3. Lear MJ, Hirai K, Ogawa K, Yamashita S, Hirama M: A convergent total synthesis of the kedarcidin chromophore: 20-years in the making. J Antibiot (Tokyo). 2019 Jun;72(6):350-363. doi: 10.1038/s41429-019-0175-y. Epub 2019 Mar 25. [PubMed:30911163 ]
  4. Delvaux NA, Thoden JB, Holden HM: Molecular architecture of KedS8, a sugar N-methyltransferase from Streptoalloteichus sp. ATCC 53650. Protein Sci. 2015 Oct;24(10):1593-9. doi: 10.1002/pro.2742. Epub 2015 Jul 21. [PubMed:26177844 ]
  5. Horsman GP, Lechner A, Ohnishi Y, Moore BS, Shen B: Predictive model for epoxide hydrolase-generated stereochemistry in the biosynthesis of nine-membered enediyne antitumor antibiotics. Biochemistry. 2013 Aug 6;52(31):5217-24. doi: 10.1021/bi400572a. Epub 2013 Jul 23. [PubMed:23844627 ]