| Record Information |
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| Version | 2.0 |
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| Created at | 2022-06-29 19:39:46 UTC |
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| Updated at | 2022-06-29 19:39:46 UTC |
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| NP-MRD ID | NP0139110 |
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| Secondary Accession Numbers | None |
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| Natural Product Identification |
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| Common Name | Kedarcidin |
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| Description | Kedarcidin belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. Kedarcidin was first documented in 2013 (PMID: 23633564). Based on a literature review a small amount of articles have been published on Kedarcidin (PMID: 23360970) (PMID: 30911163) (PMID: 26177844) (PMID: 23844627). |
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| Structure | COC1=C(OC)C2=CC(C(=O)NC3CC4=NC(Cl)=C(OC5C=C6C#C\C(=C/C#CC7OC67C5OC5CC(C)(O)C(O)C(C)O5)C(COC3=O)OC3CC(O)C(C(C)O3)N(C)C)C=C4)=C(O)C=C2C=C1OC(C)C InChI=1S/C53H60ClN3O16/c1-25(2)67-38-18-29-17-35(58)33(21-32(29)45(64-8)46(38)65-9)50(61)56-34-20-31-15-16-37(49(54)55-31)70-39-19-30-14-13-28(40(24-66-51(34)62)71-42-22-36(59)44(57(6)7)26(3)68-42)11-10-12-41-53(30,73-41)48(39)72-43-23-52(5,63)47(60)27(4)69-43/h11,15-19,21,25-27,34,36,39-44,47-48,58-60,63H,20,22-24H2,1-9H3,(H,56,61)/b28-11+ |
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| Synonyms | Not Available |
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| Chemical Formula | C53H60ClN3O16 |
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| Average Mass | 1030.5200 Da |
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| Monoisotopic Mass | 1029.36621 Da |
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| IUPAC Name | Not Available |
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| Traditional Name | Not Available |
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| CAS Registry Number | Not Available |
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| SMILES | COC1=C(OC)C2=CC(C(=O)NC3CC4=NC(Cl)=C(OC5C=C6C#C\C(=C/C#CC7OC67C5OC5CC(C)(O)C(O)C(C)O5)C(COC3=O)OC3CC(O)C(C(C)O3)N(C)C)C=C4)=C(O)C=C2C=C1OC(C)C |
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| InChI Identifier | InChI=1S/C53H60ClN3O16/c1-25(2)67-38-18-29-17-35(58)33(21-32(29)45(64-8)46(38)65-9)50(61)56-34-20-31-15-16-37(49(54)55-31)70-39-19-30-14-13-28(40(24-66-51(34)62)71-42-22-36(59)44(57(6)7)26(3)68-42)11-10-12-41-53(30,73-41)48(39)72-43-23-52(5,63)47(60)27(4)69-43/h11,15-19,21,25-27,34,36,39-44,47-48,58-60,63H,20,22-24H2,1-9H3,(H,56,61)/b28-11+ |
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| InChI Key | GFTRTMUGNRZABD-IPBVOBEMSA-N |
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| Experimental Spectra |
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| Not Available | | Predicted Spectra |
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| | Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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| 1D NMR | 13C NMR Spectrum (1D, 25 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| | Chemical Shift Submissions |
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| Not Available | | Species |
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| Species of Origin | Not Available |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. |
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| Kingdom | Organic compounds |
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| Super Class | Organic oxygen compounds |
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| Class | Organooxygen compounds |
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| Sub Class | Carbohydrates and carbohydrate conjugates |
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| Direct Parent | Aminoglycosides |
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| Alternative Parents | |
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| Substituents | - Aminoglycoside core
- Alpha-amino acid ester
- 2-naphthalenecarboxylic acid or derivatives
- 2-naphthalenecarboxamide
- N-acyl-alpha amino acid or derivatives
- O-glycosyl compound
- 2-naphthol
- Glycosyl compound
- Naphthalene
- Salicylic acid or derivatives
- Alpha-amino acid or derivatives
- Anisole
- Alkyl aryl ether
- 1-hydroxy-2-unsubstituted benzenoid
- 2-halopyridine
- Benzenoid
- Monosaccharide
- Pyridine
- Oxane
- Aryl halide
- Aryl chloride
- Tertiary alcohol
- Heteroaromatic compound
- Vinylogous acid
- 1,2-aminoalcohol
- Amino acid or derivatives
- Carboxamide group
- Carboxylic acid ester
- Tertiary aliphatic amine
- Lactone
- Tertiary amine
- Secondary carboxylic acid amide
- Secondary alcohol
- Ether
- Oxirane
- Dialkyl ether
- Acetal
- Carboxylic acid derivative
- Monocarboxylic acid or derivatives
- Oxacycle
- Organoheterocyclic compound
- Azacycle
- Organohalogen compound
- Carbonyl group
- Organopnictogen compound
- Organic oxide
- Alcohol
- Amine
- Organic nitrogen compound
- Hydrocarbon derivative
- Organonitrogen compound
- Organochloride
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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| General References | - Huang SX, Lohman JR, Huang T, Shen B: A new member of the 4-methylideneimidazole-5-one-containing aminomutase family from the enediyne kedarcidin biosynthetic pathway. Proc Natl Acad Sci U S A. 2013 May 14;110(20):8069-74. doi: 10.1073/pnas.1304733110. Epub 2013 Apr 30. [PubMed:23633564 ]
- Lohman JR, Huang SX, Horsman GP, Dilfer PE, Huang T, Chen Y, Wendt-Pienkowski E, Shen B: Cloning and sequencing of the kedarcidin biosynthetic gene cluster from Streptoalloteichus sp. ATCC 53650 revealing new insights into biosynthesis of the enediyne family of antitumor antibiotics. Mol Biosyst. 2013 Mar;9(3):478-91. doi: 10.1039/c3mb25523a. Epub 2013 Jan 29. [PubMed:23360970 ]
- Lear MJ, Hirai K, Ogawa K, Yamashita S, Hirama M: A convergent total synthesis of the kedarcidin chromophore: 20-years in the making. J Antibiot (Tokyo). 2019 Jun;72(6):350-363. doi: 10.1038/s41429-019-0175-y. Epub 2019 Mar 25. [PubMed:30911163 ]
- Delvaux NA, Thoden JB, Holden HM: Molecular architecture of KedS8, a sugar N-methyltransferase from Streptoalloteichus sp. ATCC 53650. Protein Sci. 2015 Oct;24(10):1593-9. doi: 10.1002/pro.2742. Epub 2015 Jul 21. [PubMed:26177844 ]
- Horsman GP, Lechner A, Ohnishi Y, Moore BS, Shen B: Predictive model for epoxide hydrolase-generated stereochemistry in the biosynthesis of nine-membered enediyne antitumor antibiotics. Biochemistry. 2013 Aug 6;52(31):5217-24. doi: 10.1021/bi400572a. Epub 2013 Jul 23. [PubMed:23844627 ]
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