NP-MRD: Showing NP-Card for Rivulobirin B (NP0138588)

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Record Information

Version

1.0

Created at

2022-06-29 17:36:28 UTC

Updated at

2022-06-29 17:36:28 UTC

NP-MRD ID

NP0138588

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Rivulobirin B

Description

Rivulobirin B belongs to the class of organic compounds known as 5-methoxypsoralens. These are psoralens containing a methoxy group attached at the C5 position of the psoralen group. Rivulobirin B is found in Heracleum rapula and Pleurospermum rivulorum. Rivulobirin B is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004251516142D          

 32 37  0  0  0  0            999 V2000
    1.8500   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7079   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7079   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4223   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0124   -5.5631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2674   -6.3477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0743   -6.5192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3293   -7.3039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7772   -7.9170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0322   -8.7016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9703   -7.7454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7153   -6.9608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9084   -6.7893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3563   -7.4024    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6534   -6.0047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1003   -5.6691    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0140   -4.8486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7930   -4.6771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2055   -5.3916    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8500   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0654   -3.9674    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5804   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0654   -2.6326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8500   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  4 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 14 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 13 27  2  0  0  0  0
 23 27  1  0  0  0  0
 11 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
  3 32  2  0  0  0  0
 28 32  1  0  0  0  0
M  END

     RDKit          3D

 44 49  0  0  0  0  0  0  0  0999 V2000
    5.1032    0.1437    1.3654 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7174    0.1134    0.0022 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3576   -0.0558   -0.2714 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8750   -1.3498   -0.4164 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4740   -2.5905   -0.3502 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4578   -3.4935   -0.5872 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3628   -2.8127   -0.7738 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5357   -1.5208   -0.6861 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6452   -0.4469   -0.8187 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6483   -0.7150   -1.0781 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7904   -0.6289   -0.3841 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1151   -1.4628    0.6535 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5061   -2.5299    1.2886 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3649   -2.9548    2.2895 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4367   -2.2081    2.2839 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3189   -1.3090    1.3204 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2142   -0.3423    0.9794 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4270   -0.2087    1.6730 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9175    0.5099   -0.0600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7879    1.4517   -0.4010 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5709    2.2910   -1.3837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4646    3.1405   -1.6164 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3989    2.2106   -2.1059 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4881    1.2389   -1.7611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7234    0.3614   -0.7245 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1776    0.8110   -0.6655 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4540    1.9004   -0.7638 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8836    3.1175   -0.6311 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1148    4.1182   -0.7417 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2197    3.4082   -0.3579 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0445    2.3060   -0.2403 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5323    1.0379   -0.3911 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2474   -0.0465    2.0486 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5923    1.0848    1.6564 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8318   -0.6756    1.5298 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5191   -2.7907   -0.1534 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5536   -4.5872   -0.6139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5565   -2.9120    1.0218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1954   -3.7683    2.9737 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6402   -0.8307    2.4293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2437    2.9146   -2.9136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5730    1.1801   -2.3515 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5939    4.4031   -0.2450 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0882    2.4980   -0.0283 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 17 19  1  0
 19 25  2  0
 25 24  1  0
 24 23  2  0
 23 21  1  0
 21 22  2  0
 21 20  1  0
  9 26  1  0
 26 32  2  0
 32 31  1  0
 31 30  2  0
 30 28  1  0
 28 29  2  0
 28 27  1  0
 32  3  1  0
  8  4  1  0
 25 11  1  0
 27 26  1  0
 16 12  1  0
 20 19  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
  5 36  1  0
  6 37  1  0
 13 38  1  0
 14 39  1  0
 18 40  1  0
 24 42  1  0
 23 41  1  0
 31 44  1  0
 30 43  1  0
M  END


  Mrv1533004251516142D          

 32 37  0  0  0  0            999 V2000
    1.8500   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7079   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7079   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4223   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0124   -5.5631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2674   -6.3477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0743   -6.5192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3293   -7.3039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7772   -7.9170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0322   -8.7016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9703   -7.7454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7153   -6.9608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9084   -6.7893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3563   -7.4024    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6534   -6.0047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1003   -5.6691    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0140   -4.8486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7930   -4.6771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2055   -5.3916    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8500   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0654   -3.9674    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5804   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0654   -2.6326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8500   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  4 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 14 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 13 27  2  0  0  0  0
 23 27  1  0  0  0  0
 11 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
  3 32  2  0  0  0  0
 28 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0138588

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C2C=COC2=C(OC2=C3C=COC3=C(O)C3=C2C=CC(=O)O3)C2=C1C=CC(=O)O2

> <INCHI_IDENTIFIER>
InChI=1S/C23H12O9/c1-27-17-10-2-4-15(25)31-22(10)23(21-12(17)6-9-29-21)32-18-11-3-5-14(24)30-20(11)16(26)19-13(18)7-8-28-19/h2-9,26H,1H3

> <INCHI_KEY>
QYUOMKFQMCEXAF-UHFFFAOYSA-N

> <FORMULA>
C23H12O9

> <MOLECULAR_WEIGHT>
432.34

> <EXACT_MASS>
432.048131966

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
40.273889233412234

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
9-hydroxy-4-({4-methoxy-7-oxo-7H-furo[3,2-g]chromen-9-yl}oxy)-7H-furo[3,2-g]chromen-7-one

> <ALOGPS_LOGP>
3.64

> <JCHEM_LOGP>
3.6007708116666666

> <ALOGPS_LOGS>
-4.10

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.264650436851863

> <JCHEM_PKA_STRONGEST_BASIC>
-2.5574187723838926

> <JCHEM_POLAR_SURFACE_AREA>
117.57000000000001

> <JCHEM_REFRACTIVITY>
109.40630000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.47e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
9-hydroxy-4-({4-methoxy-7-oxofuro[3,2-g]chromen-9-yl}oxy)furo[3,2-g]chromen-7-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0       3.453  -2.310   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       4.787  -3.080   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       4.787  -4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.121  -5.390   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.454  -4.620   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.788  -5.390   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.788  -6.930   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      10.122  -7.700   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0       7.454  -7.700   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       6.121  -6.930   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.787  -7.700   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       4.787  -9.240   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       3.757 -10.384   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.232 -11.849   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.739 -12.169   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.215 -13.634   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.184 -14.778   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       5.660 -16.243   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       3.678 -14.458   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       3.202 -12.994   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.696 -12.673   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       0.665 -13.818   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       1.220 -11.209   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -0.187 -10.582   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -0.026  -9.051   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.480  -8.731   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.250 -10.064   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       3.453  -6.930   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       1.989  -7.406   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       1.083  -6.160   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.989  -4.914   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.453  -5.390   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   32                                                  
CONECT    4    3    5   10                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9    4   11                                                  
CONECT   11   10   12   28                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   27                                                  
CONECT   14   13   15   20                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   14   21                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   27                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   13   23                                                  
CONECT   28   11   29   32                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31    3   28                                                  
MASTER        0    0    0    0    0    0    0    0   32    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₃H₁₂O₉

Average Mass

432.3400 Da

Monoisotopic Mass

432.04813 Da

IUPAC Name

9-hydroxy-4-({4-methoxy-7-oxo-7H-furo[3,2-g]chromen-9-yl}oxy)-7H-furo[3,2-g]chromen-7-one

Traditional Name

9-hydroxy-4-({4-methoxy-7-oxofuro[3,2-g]chromen-9-yl}oxy)furo[3,2-g]chromen-7-one

CAS Registry Number

194145-29-4

SMILES

COC1=C2C=COC2=C(OC2=C3C=COC3=C(O)C3=C2C=CC(=O)O3)C2=C1C=CC(=O)O2

InChI Identifier

InChI=1S/C23H12O9/c1-27-17-10-2-4-15(25)31-22(10)23(21-12(17)6-9-29-21)32-18-11-3-5-14(24)30-20(11)16(26)19-13(18)7-8-28-19/h2-9,26H,1H3

InChI Key

QYUOMKFQMCEXAF-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Heracleum rapula	LOTUS Database	35616633
Pleurospermum rivulorum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 5-methoxypsoralens. These are psoralens containing a methoxy group attached at the C5 position of the psoralen group.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Furanocoumarins

Direct Parent

5-methoxypsoralens

Alternative Parents

Substituents

5-methoxypsoralen
8-hydroxypsoralen
Diaryl ether
Benzopyran
1-benzopyran
Benzofuran
Anisole
Phenol ether
Pyranone
Phenol
Alkyl aryl ether
Pyran
Benzenoid
Furan
Heteroaromatic compound
Lactone
Ether
Oxacycle
Organoheterocyclic compound
Organic oxide
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.64	ALOGPS
logP	3.6	ChemAxon
logS	-4.1	ALOGPS
pKa (Strongest Acidic)	8.26	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	117.57 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	109.41 m³·mol⁻¹	ChemAxon
Polarizability	40.27 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

91885013

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Rivulobirin B (NP0138588)

MOL for NP0138588 (Rivulobirin B)

3D MOL for NP0138588 (Rivulobirin B)

3D SDF for NP0138588 (Rivulobirin B)

3D-SDF for NP0138588 (Rivulobirin B)

PDB for NP0138588 (Rivulobirin B)

3D PDB for NP0138588 (Rivulobirin B)

SMILES for NP0138588 (Rivulobirin B)

INCHI for NP0138588 (Rivulobirin B)

Structure for NP0138588 (Rivulobirin B)

3D Structure for NP0138588 (Rivulobirin B)