NP-MRD: Showing NP-Card for Picrasidine A (NP0138470)

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Record Information

Version

1.0

Created at

2022-06-29 17:31:00 UTC

Updated at

2022-06-29 17:31:00 UTC

NP-MRD ID

NP0138470

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Picrasidine A

Description

3-{4,8-Dimethoxy-9H-pyrido[3,4-b]indol-1-yl}-1-{9H-pyrido[3,4-b]indol-1-yl}propan-1-one belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole. Picrasidine A is found in Picrasma quassioides. 3-{4,8-Dimethoxy-9H-pyrido[3,4-b]indol-1-yl}-1-{9H-pyrido[3,4-b]indol-1-yl}propan-1-one is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004251516092D          

 34 39  0  0  0  0            999 V2000
    8.4455   -6.2337    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6385   -6.0621    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3836   -5.2775    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9356   -4.6644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6806   -3.8798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8737   -3.7083    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3216   -4.3214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5766   -5.1060    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9091   -5.5909    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.2417   -5.1060    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4347   -5.2775    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1798   -6.0621    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7318   -6.6752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4769   -7.4598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6699   -7.6314    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0289   -8.0729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8359   -7.9014    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3879   -8.5145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1330   -9.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3260   -9.4706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9135  -10.1851    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1685  -10.9697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6164  -11.5828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8094  -11.4113    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5545  -10.6267    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1065  -10.0136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0203   -9.1931    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7740   -8.8576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8827   -4.6644    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1376   -3.8798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9446   -3.7083    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1995   -2.9236    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0065   -2.7521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4966   -4.3214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 21 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 16 28  1  0  0  0  0
 20 28  2  0  0  0  0
 11 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 31 34  1  0  0  0  0
  7 34  1  0  0  0  0
 10 34  2  0  0  0  0
M  END

     RDKit          3D

 56 61  0  0  0  0  0  0  0  0999 V2000
   -5.9713    3.9373   -1.0599 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4741    2.7650   -0.6798 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4556    1.5911   -0.1654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5387    0.9829    0.4977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4173   -0.2681    1.0282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2571   -1.0097    0.9556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1856   -0.4489    0.3143 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2801    0.7965   -0.2228 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1243    1.0632   -0.8302 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2824    0.0044   -0.6948 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0111   -0.1730   -1.1853 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2978    0.8257   -1.9940 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3766    1.9046   -1.2435 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4515    1.4023   -0.3369 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1902    1.3525    0.8796 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7437    0.9876   -0.8363 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9932    1.0573   -2.1544 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1378    0.6854   -2.7049 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1431    0.1987   -1.9020 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9697    0.0946   -0.5354 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7301    0.5072   -0.0224 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8258    0.3065    1.3197 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.0179   -0.1932    1.6561 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5779   -0.5573    2.8627 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8616   -1.0598    2.9279 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6082   -1.2053    1.7691 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0254   -0.8352    0.5812 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7534   -0.3345    0.5026 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3913   -1.3606   -0.9257 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0362   -2.3251   -0.1995 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3096   -2.1745    0.3010 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9368   -3.1727    1.0325 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2197   -4.3666    1.2650 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9252   -0.9744    0.0314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7509    4.2720   -2.1012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1055    3.9212   -0.9937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6873    4.7533   -0.3291 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4404    1.5832    0.5398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2818   -0.7236    1.5424 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1992   -1.9837    1.3849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9188    1.9553   -1.3297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1018    1.3436   -2.6152 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3499    0.3501   -2.7741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3573    2.5150   -0.7086 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8884    2.5680   -1.9728 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2640    0.7659   -3.7782 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0934   -0.1146   -2.3278 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0413    0.5283    1.9703 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9844   -0.4392    3.7584 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2827   -1.3387    3.8920 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6038   -1.5990    1.8599 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6208   -0.9522   -0.3333 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5263   -3.2813    0.0070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3412   -4.1745    1.9498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8369   -4.8528    0.3646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8729   -5.1006    1.7840 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 34  2  0
 34 31  1  0
 31 32  1  0
 32 33  1  0
 31 30  2  0
 30 29  1  0
 29 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  1  0
 23 28  2  0
 28 27  1  0
 27 26  2  0
 26 25  1  0
 25 24  2  0
  8  3  1  0
 11 10  1  0
 21 16  1  0
 24 23  1  0
 34  7  1  0
 28 20  1  0
  1 35  1  0
  1 36  1  0
  1 37  1  0
  4 38  1  0
  5 39  1  0
  6 40  1  0
  9 41  1  0
 33 54  1  0
 33 55  1  0
 33 56  1  0
 30 53  1  0
 12 42  1  0
 12 43  1  0
 13 44  1  0
 13 45  1  0
 18 46  1  0
 19 47  1  0
 22 48  1  0
 27 52  1  0
 26 51  1  0
 25 50  1  0
 24 49  1  0
M  END


  Mrv1533004251516092D          

 34 39  0  0  0  0            999 V2000
    8.4455   -6.2337    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6385   -6.0621    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3836   -5.2775    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9356   -4.6644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6806   -3.8798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8737   -3.7083    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3216   -4.3214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5766   -5.1060    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9091   -5.5909    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.2417   -5.1060    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4347   -5.2775    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1798   -6.0621    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7318   -6.6752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4769   -7.4598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6699   -7.6314    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0289   -8.0729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8359   -7.9014    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3879   -8.5145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1330   -9.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3260   -9.4706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9135  -10.1851    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1685  -10.9697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6164  -11.5828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8094  -11.4113    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5545  -10.6267    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1065  -10.0136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0203   -9.1931    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7740   -8.8576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8827   -4.6644    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1376   -3.8798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9446   -3.7083    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1995   -2.9236    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0065   -2.7521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4966   -4.3214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 21 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 16 28  1  0  0  0  0
 20 28  2  0  0  0  0
 11 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 31 34  1  0  0  0  0
  7 34  1  0  0  0  0
 10 34  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0138470

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=CC2=C1NC1=C2C(OC)=CN=C1CCC(=O)C1=NC=CC2=C1NC1=C2C=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C27H22N4O3/c1-33-21-9-5-7-17-23-22(34-2)14-29-19(26(23)31-24(17)21)10-11-20(32)27-25-16(12-13-28-27)15-6-3-4-8-18(15)30-25/h3-9,12-14,30-31H,10-11H2,1-2H3

> <INCHI_KEY>
MSRXRROCBIUJCG-UHFFFAOYSA-N

> <FORMULA>
C27H22N4O3

> <MOLECULAR_WEIGHT>
450.498

> <EXACT_MASS>
450.169190584

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
49.41254381186539

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-{4,8-dimethoxy-9H-pyrido[3,4-b]indol-1-yl}-1-{9H-pyrido[3,4-b]indol-1-yl}propan-1-one

> <ALOGPS_LOGP>
4.28

> <JCHEM_LOGP>
3.5541604680000005

> <ALOGPS_LOGS>
-5.17

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.998423649946702

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.579136391745605

> <JCHEM_PKA_STRONGEST_BASIC>
5.419892497296313

> <JCHEM_POLAR_SURFACE_AREA>
92.89000000000001

> <JCHEM_REFRACTIVITY>
128.42890000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.05e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-{4,8-dimethoxy-9H-pyrido[3,4-b]indol-1-yl}-1-{9H-pyrido[3,4-b]indol-1-yl}propan-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0      15.765 -11.636   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      14.259 -11.316   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      13.783  -9.851   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      14.813  -8.707   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      14.337  -7.242   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.831  -6.922   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      11.800  -8.067   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      12.276  -9.531   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      11.030 -10.436   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       9.785  -9.531   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.278  -9.851   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.802 -11.316   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.833 -12.460   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.357 -13.925   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       6.851 -14.245   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       9.387 -15.069   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0      10.894 -14.749   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0      11.924 -15.894   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.448 -17.358   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.942 -17.679   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       9.172 -19.012   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.648 -20.477   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.617 -21.621   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       7.111 -21.301   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.635 -19.836   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.666 -18.692   0.000  0.00  0.00           C+0
HETATM   27  N   UNK     0       7.505 -17.160   0.000  0.00  0.00           N+0
HETATM   28  C   UNK     0       8.911 -16.534   0.000  0.00  0.00           C+0
HETATM   29  N   UNK     0       7.248  -8.707   0.000  0.00  0.00           N+0
HETATM   30  C   UNK     0       7.724  -7.242   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       9.230  -6.922   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       9.706  -5.457   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      11.212  -5.137   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      10.260  -8.067   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   34                                                  
CONECT    8    7    3    9                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   34                                                  
CONECT   11   10   12   29                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   28                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   28                                                  
CONECT   21   20   22   26                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   21   27                                                  
CONECT   27   26   28                                                       
CONECT   28   27   16   20                                                  
CONECT   29   11   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32   34                                                  
CONECT   32   31   33                                                       
CONECT   33   32                                                            
CONECT   34   31    7   10                                                  
MASTER        0    0    0    0    0    0    0    0   34    0   78    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₂₂N₄O₃

Average Mass

450.4980 Da

Monoisotopic Mass

450.16919 Da

IUPAC Name

3-{4,8-dimethoxy-9H-pyrido[3,4-b]indol-1-yl}-1-{9H-pyrido[3,4-b]indol-1-yl}propan-1-one

Traditional Name

3-{4,8-dimethoxy-9H-pyrido[3,4-b]indol-1-yl}-1-{9H-pyrido[3,4-b]indol-1-yl}propan-1-one

CAS Registry Number

82652-20-8

SMILES

COC1=CC=CC2=C1NC1=C2C(OC)=CN=C1CCC(=O)C1=NC=CC2=C1NC1=C2C=CC=C1

InChI Identifier

InChI=1S/C27H22N4O3/c1-33-21-9-5-7-17-23-22(34-2)14-29-19(26(23)31-24(17)21)10-11-20(32)27-25-16(12-13-28-27)15-6-3-4-8-18(15)30-25/h3-9,12-14,30-31H,10-11H2,1-2H3

InChI Key

MSRXRROCBIUJCG-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Picrasma quassioides	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Harmala alkaloids

Sub Class

Not Available

Direct Parent

Harmala alkaloids

Alternative Parents

Substituents

Harman
Beta-carboline
Pyridoindole
Indole
Indole or derivatives
Aryl alkyl ketone
Aryl ketone
Phenol ether
Anisole
Alkyl aryl ether
Benzenoid
Pyridine
Vinylogous amide
Pyrrole
Heteroaromatic compound
Ketone
Azacycle
Organoheterocyclic compound
Ether
Hydrocarbon derivative
Organonitrogen compound
Organic oxygen compound
Organooxygen compound
Organic nitrogen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.28	ALOGPS
logP	3.55	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	10.58	ChemAxon
pKa (Strongest Basic)	5.42	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	92.89 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	128.43 m³·mol⁻¹	ChemAxon
Polarizability	49.41 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5315686

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Picrasidine A (NP0138470)

MOL for NP0138470 (Picrasidine A)

3D MOL for NP0138470 (Picrasidine A)

3D SDF for NP0138470 (Picrasidine A)

3D-SDF for NP0138470 (Picrasidine A)

PDB for NP0138470 (Picrasidine A)

3D PDB for NP0138470 (Picrasidine A)

SMILES for NP0138470 (Picrasidine A)

INCHI for NP0138470 (Picrasidine A)

Structure for NP0138470 (Picrasidine A)

3D Structure for NP0138470 (Picrasidine A)