NP-MRD: Showing NP-Card for Homopterocarpin (NP0138459)

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Record Information

Version

1.0

Created at

2022-06-29 17:30:30 UTC

Updated at

2022-06-29 17:30:30 UTC

NP-MRD ID

NP0138459

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Homopterocarpin

Description

Homopterocarpin belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids. Homopterocarpin is found in Ononis natrix, Ononis viscosa, Platymiscium floribundum and Pterocarpus macrocarpus. It was first documented in 2018 (PMID: 30174522). Based on a literature review a significant number of articles have been published on Homopterocarpin (PMID: 32555159) (PMID: 32495561) (PMID: 35736133) (PMID: 35722767).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 37 40  0  0  0  0  0  0  0  0999 V2000
    6.6171    0.4566   -0.7102 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4135    1.1415   -1.0024 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2219    0.6137   -0.4918 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2091   -0.5345    0.2715 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0215   -1.0382    0.7655 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8211   -0.4043    0.5065 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8063    0.7448   -0.2534 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0029    1.2325   -0.7381 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4683    1.1851   -0.3643 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2128    0.6861    0.8031 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6567    0.5572    0.6156 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4419    1.6881    0.7953 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8236    1.6372    0.6347 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4270    0.4520    0.2928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8006    0.4259    0.1389 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5540   -0.6969   -0.2047 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6709   -0.6808    0.1094 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2994   -0.6096    0.2737 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5262   -1.7557    0.0889 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1634   -1.5182   -0.2437 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4142   -0.6851    0.8754 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.4683    0.8542   -1.2698 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8088    0.3995    0.3918 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4786   -0.6022   -1.0467 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1408   -1.0281    0.4735 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0138   -1.9421    1.3661 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0282    2.1376   -1.3418 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0491    1.3042    1.6877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9978    2.6290    1.0630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4185    2.5382    0.7812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9365   -1.2446    0.6810 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0384   -1.4227   -0.8492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4746   -0.3862   -0.7750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1288   -1.6226   -0.1600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1170   -0.8979   -1.1628 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3951   -2.4582   -0.4031 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3094   -1.1556    1.8655 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  8  2  0
  8  7  1  0
  7  6  2  0
  6  5  1  0
  5  4  2  0
  6 21  1  0
 21 20  1  0
 20 19  1  0
 19 18  1  0
 18 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 14 17  2  0
 11 10  1  0
 10  9  1  0
  4  3  1  0
 10 21  1  0
  9  7  1  0
 17 18  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  8 27  1  0
  5 26  1  0
  4 25  1  0
 21 37  1  1
 20 35  1  0
 20 36  1  0
 12 29  1  0
 13 30  1  0
 16 31  1  0
 16 32  1  0
 16 33  1  0
 17 34  1  0
 10 28  1  1
M  END


  Mrv1652306292219302D          

 21 24  0  0  1  0            999 V2000
   -4.4802   -1.2685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7861   -0.8225    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0528   -1.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3588   -0.7546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6255   -1.1327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5863   -1.9568    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2804   -2.4027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0136   -2.0247    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7905   -2.1741    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4195   -2.9110    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4042   -2.9581    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8568   -2.2684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4859   -1.5315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3378   -1.4844    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8539   -0.8407    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9385   -0.8418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7622   -0.8889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1332   -1.6258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6805   -2.3156    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9568   -1.6730    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4095   -0.9832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  9  6  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  1  0  0  0
  5 15  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 12 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0138459

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=C(C=C1)[C@@H]1COC3=C(C=CC(OC)=C3)[C@@H]1O2

> <INCHI_IDENTIFIER>
InChI=1S/C17H16O4/c1-18-10-4-6-13-15(7-10)20-9-14-12-5-3-11(19-2)8-16(12)21-17(13)14/h3-8,14,17H,9H2,1-2H3/t14-,17-/m0/s1

> <INCHI_KEY>
VPGIGLKLCFOWDN-YOEHRIQHSA-N

> <FORMULA>
C17H16O4

> <MOLECULAR_WEIGHT>
284.311

> <EXACT_MASS>
284.104858995

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
37

> <JCHEM_AVERAGE_POLARIZABILITY>
30.335585498507072

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,10R)-5,14-dimethoxy-8,17-dioxatetracyclo[8.7.0.0^{2,7}.0^{11,16}]heptadeca-2(7),3,5,11(16),12,14-hexaene

> <ALOGPS_LOGP>
3.38

> <JCHEM_LOGP>
2.655117452333333

> <ALOGPS_LOGS>
-4.26

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.258805634402126

> <JCHEM_POLAR_SURFACE_AREA>
36.92

> <JCHEM_REFRACTIVITY>
77.54340000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.56e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,10R)-5,14-dimethoxy-8,17-dioxatetracyclo[8.7.0.0^{2,7}.0^{11,16}]heptadeca-2(7),3,5,11(16),12,14-hexaene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 29-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-JUN-22         0                                  
HETATM    1  C   UNK     0      -8.363  -2.368   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -7.067  -1.535   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -5.699  -2.241   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.403  -1.409   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.034  -2.114   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.961  -3.653   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -4.257  -4.485   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -5.625  -3.779   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.476  -4.058   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.783  -5.434   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       0.754  -5.522   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       1.599  -4.234   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.907  -2.859   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.631  -2.771   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -1.594  -1.569   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       1.752  -1.571   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.289  -1.659   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.982  -3.035   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.137  -4.322   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       5.519  -3.123   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       6.364  -1.835   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   15                                                  
CONECT    6    5    7    9                                                  
CONECT    7    6    8                                                       
CONECT    8    7    3                                                       
CONECT    9    6   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   19                                                  
CONECT   13   12   14   16                                                  
CONECT   14   13    9   15                                                  
CONECT   15   14    5                                                       
CONECT   16   13   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18   12                                                       
CONECT   20   18   21                                                       
CONECT   21   20                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₁₆O₄

Average Mass

284.3110 Da

Monoisotopic Mass

284.10486 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

606-91-7

SMILES

COC1=CC2=C(C=C1)[C@@H]1COC3=C(C=CC(OC)=C3)[C@@H]1O2

InChI Identifier

InChI=1S/C17H16O4/c1-18-10-4-6-13-15(7-10)20-9-14-12-5-3-11(19-2)8-16(12)21-17(13)14/h3-8,14,17H,9H2,1-2H3/t14-,17-/m0/s1

InChI Key

VPGIGLKLCFOWDN-YOEHRIQHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ononis natrix	LOTUS Database	35616633
Ononis viscosa	LOTUS Database	35616633
Platymiscium floribundum	LOTUS Database	35616633
Pterocarpus macrocarpus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Isoflavonoids

Sub Class

Furanoisoflavonoids

Direct Parent

Pterocarpans

Alternative Parents

Substituents

Pterocarpan
Isoflavanol
Isoflavan
Chromane
1-benzopyran
Benzopyran
Coumaran
Benzofuran
Anisole
Alkyl aryl ether
Benzenoid
Oxacycle
Organoheterocyclic compound
Ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00002536

Chemspider ID

91975

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101795

PDB ID

Not Available

ChEBI ID

114197

Good Scents ID

Not Available

References

General References

Ciesielski P, Metz P: Asymmetric one-pot transformation of isoflavones to pterocarpans and its application in phytoalexin synthesis. Nat Commun. 2020 Jun 18;11(1):3091. doi: 10.1038/s41467-020-16933-y. [PubMed:32555159 ]
Zhu MM, Wang H, Mi CN, Mei WL, Gai CJ, Dai HF, Yu M, Wu XQ, Wang H: [A new cytotoxic isoflavane from Dalbergiae Odoriferae Lignum]. Zhongguo Zhong Yao Za Zhi. 2020 May;45(9):2122-2129. doi: 10.19540/j.cnki.cjcmm.20200107.202. [PubMed:32495561 ]
Chen J, Ge S, Liu Z, Zhang D, Peng W: GC-MS explores health care components in the extract of Pterocarpus Macarocarpus Kurz. Saudi J Biol Sci. 2018 Sep;25(6):1196-1201. doi: 10.1016/j.sjbs.2017.12.013. Epub 2018 Jan 11. [PubMed:30174522 ]
Kwiecinski JM, Jelani DA, Fuentes EJ, Horswill AR: Therapeutic Inhibition of Staphylococcus aureus ArlRS Two-Component Regulatory System Blocks Virulence. Antimicrob Agents Chemother. 2022 Jul 19;66(7):e0018722. doi: 10.1128/aac.00187-22. Epub 2022 Jun 23. [PubMed:35736133 ]
Ajaegbu EE, Eboka CJ, Okoye FBC, Proksch P: Cytotoxic effect and antioxidant activity of pterocarpans from Millettia aboensis root. Nat Prod Res. 2023 Mar;37(5):829-834. doi: 10.1080/14786419.2022.2089984. Epub 2022 Jun 18. [PubMed:35722767 ]

Showing NP-Card for Homopterocarpin (NP0138459)

MOL for NP0138459 (Homopterocarpin)

3D MOL for NP0138459 (Homopterocarpin)

3D SDF for NP0138459 (Homopterocarpin)

3D-SDF for NP0138459 (Homopterocarpin)

PDB for NP0138459 (Homopterocarpin)

3D PDB for NP0138459 (Homopterocarpin)

SMILES for NP0138459 (Homopterocarpin)

INCHI for NP0138459 (Homopterocarpin)

Structure for NP0138459 (Homopterocarpin)

3D Structure for NP0138459 (Homopterocarpin)