NP-MRD: Showing NP-Card for 9-Hydroxyeriobofuran (NP0137617)

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Record Information

Version

1.0

Created at

2022-05-30 16:57:52 UTC

Updated at

2022-05-30 16:57:52 UTC

NP-MRD ID

NP0137617

Secondary Accession Numbers

None

Natural Product Identification

Common Name

9-Hydroxyeriobofuran

Description

10,12-Dimethoxy-8-oxatricyclo[7.4.0.0²,⁷]Trideca-1(13),2,4,6,9,11-hexaene-3,11-diol belongs to the class of organic compounds known as dibenzofurans. Dibenzofurans are compounds containing a dibenzofuran moiety, which consists of two benzene rings fused to a central furan ring. 9-Hydroxyeriobofuran is found in Berberis koreana and Pyracantha coccinea. 10,12-Dimethoxy-8-oxatricyclo[7.4.0.0²,⁷]Trideca-1(13),2,4,6,9,11-hexaene-3,11-diol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 31 33  0  0  0  0  0  0  0  0999 V2000
    3.2462   -2.7065    0.0669 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2425   -1.3381    0.3082 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0952   -0.5484    0.3470 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8239   -1.0913    0.1398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3037   -0.2915    0.1821 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1934    1.0665    0.4316 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3885    1.6050    0.4219 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2873    0.6834    0.1804 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6729    0.7452    0.0699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3663   -0.4121   -0.1952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7737   -1.6258   -0.3575 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3659   -1.7100   -0.2490 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7837   -2.9192   -0.4114 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6770   -0.5281    0.0200 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0692    1.6213    0.6401 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1725    2.9996    0.8925 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3281    3.8337   -0.2459 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1571    0.8014    0.5907 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4227    1.3410    0.7969 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1720   -3.1427    0.5013 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4001   -3.1704    0.6128 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2027   -2.9008   -1.0313 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7743   -2.1305   -0.0481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1759    1.6875    0.1922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4602   -0.3669   -0.2830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3269   -2.5437   -0.5680 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9613   -3.3590   -0.4170 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0669    3.3284   -0.9326 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6837    4.8105    0.0907 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3326    3.9363   -0.7084 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5472    2.3251    0.9816 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8 14  2  0
 14 12  1  0
 12 13  1  0
 12 11  2  0
 11 10  1  0
 10  9  2  0
  6 15  1  0
 15 16  1  0
 16 17  1  0
 15 18  2  0
 18 19  1  0
 18  3  1  0
 14  5  1  0
  9  8  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  4 23  1  0
 13 27  1  0
 11 26  1  0
 10 25  1  0
  9 24  1  0
 17 28  1  0
 17 29  1  0
 17 30  1  0
 19 31  1  0
M  END


  Mrv1533004231517292D          

 19 21  0  0  0  0            999 V2000
    5.0645    1.4672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2575    1.6387    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7054    1.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8985    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3464    0.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6014   -0.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9339   -0.6855    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2665   -0.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4595   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0925    0.2410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1624    1.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9694    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2243    1.9817    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5214    0.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4084   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6633   -1.1567    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4703   -1.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9604    0.2410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7674    0.0694    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
  5 14  1  0  0  0  0
  8 14  2  0  0  0  0
  6 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 15 18  2  0  0  0  0
  3 18  1  0  0  0  0
 18 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0137617

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=C(OC3=C2C(O)=CC=C3)C(OC)=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C14H12O5/c1-17-10-6-7-11-8(15)4-3-5-9(11)19-13(7)14(18-2)12(10)16/h3-6,15-16H,1-2H3

> <INCHI_KEY>
VQWSIJRLYROCFW-UHFFFAOYSA-N

> <FORMULA>
C14H12O5

> <MOLECULAR_WEIGHT>
260.245

> <EXACT_MASS>
260.068473486

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
26.24033606735871

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
10,12-dimethoxy-8-oxatricyclo[7.4.0.0²,⁷]trideca-1(9),2(7),3,5,10,12-hexaene-3,11-diol

> <ALOGPS_LOGP>
2.61

> <JCHEM_LOGP>
2.2287739223333336

> <ALOGPS_LOGS>
-2.84

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.878721806572033

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.851682746073541

> <JCHEM_PKA_STRONGEST_BASIC>
-2.918653522395622

> <JCHEM_POLAR_SURFACE_AREA>
72.06

> <JCHEM_REFRACTIVITY>
68.11500000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.73e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
10,12-dimethoxy-8-oxatricyclo[7.4.0.0²,⁷]trideca-1(9),2(7),3,5,10,12-hexaene-3,11-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  C   UNK     0       9.454   2.739   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       7.947   3.059   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       6.917   1.914   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.410   2.235   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.380   1.090   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.856  -0.374   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.610  -1.280   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       2.364  -0.374   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.858  -0.695   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.173   0.450   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.303   1.914   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.810   2.235   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.285   3.699   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.840   1.090   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.362  -0.695   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       6.838  -2.159   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       8.344  -2.479   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.393   0.450   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.899   0.130   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   18                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   14                                                  
CONECT    6    5    7   15                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   14                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12    5    8                                                  
CONECT   15    6   16   18                                                  
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   15    3   19                                                  
CONECT   19   18                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   42    0
END

View in JSmol

Synonyms

Value	Source
9-Hydroxyeriobofuran	ChEMBL

Chemical Formula

C₁₄H₁₂O₅

Average Mass

260.2450 Da

Monoisotopic Mass

260.06847 Da

IUPAC Name

10,12-dimethoxy-8-oxatricyclo[7.4.0.0²,⁷]trideca-1(9),2(7),3,5,10,12-hexaene-3,11-diol

Traditional Name

10,12-dimethoxy-8-oxatricyclo[7.4.0.0²,⁷]trideca-1(9),2(7),3,5,10,12-hexaene-3,11-diol

CAS Registry Number

Not Available

SMILES

COC1=CC2=C(OC3=C2C(O)=CC=C3)C(OC)=C1O

InChI Identifier

InChI=1S/C14H12O5/c1-17-10-6-7-11-8(15)4-3-5-9(11)19-13(7)14(18-2)12(10)16/h3-6,15-16H,1-2H3

InChI Key

VQWSIJRLYROCFW-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Berberis koreana	LOTUS Database	35616633
Pyracantha coccinea	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dibenzofurans. Dibenzofurans are compounds containing a dibenzofuran moiety, which consists of two benzene rings fused to a central furan ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzofurans

Sub Class

Dibenzofurans

Direct Parent

Dibenzofurans

Alternative Parents

Substituents

Dibenzofuran
Anisole
Phenol ether
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Phenol
Benzenoid
Heteroaromatic compound
Furan
Oxacycle
Ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.61	ALOGPS
logP	2.23	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	7.85	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	72.06 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	68.12 m³·mol⁻¹	ChemAxon
Polarizability	26.24 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

46879746

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 9-Hydroxyeriobofuran (NP0137617)

MOL for NP0137617 (9-Hydroxyeriobofuran)

3D MOL for NP0137617 (9-Hydroxyeriobofuran)

3D SDF for NP0137617 (9-Hydroxyeriobofuran)

3D-SDF for NP0137617 (9-Hydroxyeriobofuran)

PDB for NP0137617 (9-Hydroxyeriobofuran)

3D PDB for NP0137617 (9-Hydroxyeriobofuran)

SMILES for NP0137617 (9-Hydroxyeriobofuran)

INCHI for NP0137617 (9-Hydroxyeriobofuran)

Structure for NP0137617 (9-Hydroxyeriobofuran)

3D Structure for NP0137617 (9-Hydroxyeriobofuran)