NP-MRD: Showing NP-Card for Odorinol (NP0137580)

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Record Information

Version

2.0

Created at

2022-05-30 16:56:48 UTC

Updated at

2022-05-30 16:56:48 UTC

NP-MRD ID

NP0137580

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Odorinol

Description

Odorine, also known as odorinol, belongs to the class of organic compounds known as cinnamic acids and derivatives. These are organic aromatic compounds containing a benzene and a carboxylic acid group (or a derivative thereof) forming 3-phenylprop-2-enoic acid. Odorinol is found in Aglaia elaeagnoidea, Aglaia elliptica, Aglaia laxiflora and Aglaia odorata. Odorine is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 46 47  0  0  0  0  0  0  0  0999 V2000
    6.0280    0.5713   -0.8711 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8075    0.2535   -0.0718 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7176    1.2852   -0.2962 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1433    2.6685    0.0921 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5377    0.8585    0.4659 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0980    1.6413    1.3678 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9345   -0.3807    0.1855 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7591   -0.7766    0.9638 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1601   -2.0890    1.6486 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0742   -3.0361    0.4720 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1319   -2.3783   -0.5433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3015   -1.2185    0.1390 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5955   -0.5843    0.0180 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7771    0.4261    0.7131 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5962   -1.1080   -0.8594 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7832   -0.7872   -1.1243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6902    0.2168   -0.6864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7771    0.4975   -1.5438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7405    1.3932   -1.1737 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7108    2.0576    0.0239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6746    1.8063    0.8728 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6855    0.8828    0.4888 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6800   -0.3254   -0.8707 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7283    0.7657   -1.9118 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6078    1.3941   -0.4183 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0772    0.1440    0.9775 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3974   -0.7133   -0.4274 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5202    1.2931   -1.3879 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7462    3.1756   -0.6868 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2378    3.2741    0.2751 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7667    2.6800    1.0174 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3206   -0.9934   -0.5575 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4915   -0.0075    1.7049 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3759   -2.3209    2.4154 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1654   -2.0248    2.0859 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6144   -4.0109    0.7778 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0601   -3.1940   -0.0052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6630   -3.0928   -0.8348 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7536   -2.0913   -1.4398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2455   -2.0381   -1.4741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2411   -1.5160   -1.9181 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8732    0.0247   -2.4950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5812    1.6140   -1.8307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4715    2.7686    0.3204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5715    2.2812    1.8300 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9558    0.7137    1.2339 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 12  8  1  0
 22 17  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  2 26  1  0
  2 27  1  0
  3 28  1  6
  4 29  1  0
  4 30  1  0
  4 31  1  0
  7 32  1  0
  8 33  1  1
  9 34  1  0
  9 35  1  0
 10 36  1  0
 10 37  1  0
 11 38  1  0
 11 39  1  0
 15 40  1  0
 16 41  1  0
 18 42  1  0
 19 43  1  0
 20 44  1  0
 21 45  1  0
 22 46  1  0
M  END


  Mrv1533004161513212D          

 22 23  0  0  0  0            999 V2000
    0.2540   -5.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9684   -5.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6829   -5.6190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6829   -6.4440    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3974   -5.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3974   -4.3815    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1118   -5.6190    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.8263   -5.2065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9125   -4.3860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7195   -4.2145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1320   -4.9290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5800   -5.5421    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7515   -6.3490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1384   -6.9011    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5361   -6.6040    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1492   -6.0520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9338   -6.3069    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5469   -5.7549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3316   -6.0098    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5031   -6.8168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8900   -7.3688    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1054   -7.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  8 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 15 13  1  4  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 17 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0137580

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(C)C(=O)NC1CCCN1C(=O)C=CC1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C18H24N2O2/c1-3-14(2)18(22)19-16-10-7-13-20(16)17(21)12-11-15-8-5-4-6-9-15/h4-6,8-9,11-12,14,16H,3,7,10,13H2,1-2H3,(H,19,22)

> <INCHI_KEY>
KZAOEMMZRGEBST-UHFFFAOYSA-N

> <FORMULA>
C18H24N2O2

> <MOLECULAR_WEIGHT>
300.402

> <EXACT_MASS>
300.183778021

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
34.511224995633896

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-methyl-N-[1-(3-phenylprop-2-enoyl)pyrrolidin-2-yl]butanamide

> <ALOGPS_LOGP>
2.57

> <JCHEM_LOGP>
2.9894234333333327

> <ALOGPS_LOGS>
-3.78

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.177219747639231

> <JCHEM_PKA_STRONGEST_BASIC>
-0.5118476496606609

> <JCHEM_POLAR_SURFACE_AREA>
49.410000000000004

> <JCHEM_REFRACTIVITY>
88.26050000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.99e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-methyl-N-[1-(3-phenylprop-2-enoyl)pyrrolidin-2-yl]butanamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0       0.474 -10.489   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.808  -9.719   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.141 -10.489   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.141 -12.029   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.475  -9.719   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       4.475  -8.179   0.000  0.00  0.00           O+0
HETATM    7  N   UNK     0       5.809 -10.489   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       7.142  -9.719   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.303  -8.187   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.810  -7.867   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.580  -9.201   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       8.549 -10.345   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       8.869 -11.852   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       7.725 -12.882   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      10.334 -12.327   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      11.479 -11.297   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      12.943 -11.773   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      14.088 -10.742   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      15.552 -11.218   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      15.872 -12.725   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      14.728 -13.755   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      13.263 -13.279   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9   12                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11    8   13                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   17                                                       
MASTER        0    0    0    0    0    0    0    0   22    0   46    0
END

View in JSmol

Synonyms

Value	Source
Odorinol	MeSH
2-Methyl-N-[1-(3-phenylprop-2-enoyl)pyrrolidin-2-yl]butanimidate	Generator

Chemical Formula

C₁₈H₂₄N₂O₂

Average Mass

300.4020 Da

Monoisotopic Mass

300.18378 Da

IUPAC Name

2-methyl-N-[1-(3-phenylprop-2-enoyl)pyrrolidin-2-yl]butanamide

Traditional Name

2-methyl-N-[1-(3-phenylprop-2-enoyl)pyrrolidin-2-yl]butanamide

CAS Registry Number

Not Available

SMILES

CCC(C)C(=O)NC1CCCN1C(=O)C=CC1=CC=CC=C1

InChI Identifier

InChI=1S/C18H24N2O2/c1-3-14(2)18(22)19-16-10-7-13-20(16)17(21)12-11-15-8-5-4-6-9-15/h4-6,8-9,11-12,14,16H,3,7,10,13H2,1-2H3,(H,19,22)

InChI Key

KZAOEMMZRGEBST-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aglaia elaeagnoidea	LOTUS Database	35616633
Aglaia elliptica	LOTUS Database	35616633
Aglaia laxiflora	LOTUS Database	35616633
Aglaia odorata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cinnamic acids and derivatives. These are organic aromatic compounds containing a benzene and a carboxylic acid group (or a derivative thereof) forming 3-phenylprop-2-enoic acid.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Not Available

Direct Parent

Cinnamic acids and derivatives

Alternative Parents

Substituents

Cinnamic acid or derivatives
N-acylpyrrolidine
Styrene
Monocyclic benzene moiety
Fatty amide
N-acyl-amine
Fatty acyl
Benzenoid
Pyrrolidine
Tertiary carboxylic acid amide
Secondary carboxylic acid amide
Carboxamide group
Azacycle
Carboxylic acid derivative
Organoheterocyclic compound
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Organic nitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.57	ALOGPS
logP	2.99	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	13.18	ChemAxon
pKa (Strongest Basic)	-0.51	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	49.41 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	88.26 m³·mol⁻¹	ChemAxon
Polarizability	34.51 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

57369849

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Odorinol (NP0137580)

MOL for NP0137580 (Odorinol)

3D MOL for NP0137580 (Odorinol)

3D SDF for NP0137580 (Odorinol)

3D-SDF for NP0137580 (Odorinol)

PDB for NP0137580 (Odorinol)

3D PDB for NP0137580 (Odorinol)

SMILES for NP0137580 (Odorinol)

INCHI for NP0137580 (Odorinol)

Structure for NP0137580 (Odorinol)

3D Structure for NP0137580 (Odorinol)