NP-MRD: Showing NP-Card for Vindolinine (NP0137573)

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Record Information

Version

2.0

Created at

2022-05-30 16:56:36 UTC

Updated at

2022-05-30 16:56:36 UTC

NP-MRD ID

NP0137573

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Vindolinine

Description

Methyl 6,7-didehydro-2,20-cycloaspidospermidine-3-carboxylate, also known as vindolinine, belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring. Vindolinine is found in Catharanthus lanceus, Catharanthus roseus, Catharanthus trichophyllus, Melodinus fusiformis and Melodinus suaveolens. Methyl 6,7-didehydro-2,20-cycloaspidospermidine-3-carboxylate is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004161519392D          

 25 30  0  0  0  0            999 V2000
   -0.1924   -3.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5907   -4.1949    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2070   -3.6464    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9901   -3.9059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0402   -2.8385    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2512   -2.4549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5477   -1.6891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3146   -1.4581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6621   -0.6874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1508   -0.0360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6799   -0.1524    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3802    0.3040    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9996   -0.2452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7606   -1.0949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9462   -0.9624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5775   -0.8954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9329   -0.1509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7554   -0.0864    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2225   -0.7664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8671   -1.5109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0446   -1.5754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5399   -2.2290    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7450   -2.0203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2811   -2.3559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5876   -2.8028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  7 15  1  0  0  0  0
 11 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
  5 23  1  0  0  0  0
 14 23  1  0  0  0  0
 23 24  1  0  0  0  0
  7 24  1  0  0  0  0
 24 25  1  0  0  0  0
M  END

     RDKit          3D

 49 54  0  0  0  0  0  0  0  0999 V2000
    4.6937   -1.5124    1.0449 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4311   -0.9249    1.2560 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2633   -1.6556    1.0844 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4086   -2.8554    0.7340 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9854   -0.9737    1.3240 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2073   -1.8955    1.0522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7057   -1.4761   -0.3402 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4906   -2.4624   -1.0047 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7761   -2.5595   -0.5767 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2908   -1.6801    0.5111 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6650   -0.4208    0.5902 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5064    0.2218    1.8263 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1477    0.9350    1.7555 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5968    0.7361    0.4025 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3512    1.9863   -0.3422 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2056    2.9424   -0.8232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6993    4.0263   -1.4900 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6572    4.1899   -1.6960 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5150    3.2468   -1.2228 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0098    2.1357   -0.5405 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7069    1.0322    0.0351 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7480    0.0579    0.2905 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5139   -0.9064   -0.9004 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4715   -0.2201   -2.1935 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5500   -0.1952   -0.2321 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4397   -0.6685    1.0244 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7814   -2.0371    0.0781 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9482   -2.1737    1.9001 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0008   -0.6208    2.3636 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1776   -2.9181    0.9570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9740   -1.8463    1.8148 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1981   -3.1332   -1.7938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4683   -3.2729   -1.0039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3158   -2.2446    1.4791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3750   -1.4960    0.2748 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2971    1.0273    1.9007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6193   -0.3720    2.7345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2997    2.0472    1.8951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5826    0.6063    2.6132 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2836    2.8528   -0.6828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4231    4.7634   -1.8554 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9560    5.0787   -2.2331 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5682    3.3803   -1.3865 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7279    1.0297    0.2002 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3299   -1.6542   -0.9201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2520    0.5660   -2.3505 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3439   -0.9785   -2.9929 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4858    0.2305   -2.3838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8827    0.0614   -1.2439 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  6
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 14 13  1  1
 14 25  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 22 21  1  6
 22 23  1  0
 23 24  1  0
 22  5  1  0
 25  7  1  0
 20 15  1  0
 23  7  1  0
 25 11  1  0
 22 14  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  5 29  1  1
  6 30  1  0
  6 31  1  0
  8 32  1  0
  9 33  1  0
 10 34  1  0
 10 35  1  0
 12 36  1  0
 12 37  1  0
 13 38  1  0
 13 39  1  0
 25 49  1  6
 16 40  1  0
 17 41  1  0
 18 42  1  0
 19 43  1  0
 21 44  1  0
 23 45  1  6
 24 46  1  0
 24 47  1  0
 24 48  1  0
M  END


  Mrv1533004161519392D          

 25 30  0  0  0  0            999 V2000
   -0.1924   -3.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5907   -4.1949    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2070   -3.6464    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9901   -3.9059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0402   -2.8385    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2512   -2.4549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5477   -1.6891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3146   -1.4581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6621   -0.6874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1508   -0.0360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6799   -0.1524    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3802    0.3040    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9996   -0.2452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7606   -1.0949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9462   -0.9624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5775   -0.8954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9329   -0.1509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7554   -0.0864    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2225   -0.7664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8671   -1.5109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0446   -1.5754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5399   -2.2290    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7450   -2.0203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2811   -2.3559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5876   -2.8028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  7 15  1  0  0  0  0
 11 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
  5 23  1  0  0  0  0
 14 23  1  0  0  0  0
 23 24  1  0  0  0  0
  7 24  1  0  0  0  0
 24 25  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0137573

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1CC23C=CCN4CCC5(C24)C2=CC=CC=C2NC15C3C

> <INCHI_IDENTIFIER>
InChI=1S/C21H24N2O2/c1-13-19-8-5-10-23-11-9-20(18(19)23)14-6-3-4-7-16(14)22-21(13,20)15(12-19)17(24)25-2/h3-8,13,15,18,22H,9-12H2,1-2H3

> <INCHI_KEY>
JSLDLCGKZDUQSH-UHFFFAOYSA-N

> <FORMULA>
C21H24N2O2

> <MOLECULAR_WEIGHT>
336.435

> <EXACT_MASS>
336.183778021

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
36.922288354909604

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl 20-methyl-8,16-diazahexacyclo[10.6.1.1⁹,¹².0¹,⁹.0²,⁷.0¹⁶,¹⁹]icosa-2,4,6,13-tetraene-10-carboxylate

> <ALOGPS_LOGP>
3.48

> <JCHEM_LOGP>
2.000978840333334

> <ALOGPS_LOGS>
-3.35

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
17.490927234863342

> <JCHEM_PKA_STRONGEST_BASIC>
9.13545898917887

> <JCHEM_POLAR_SURFACE_AREA>
41.57

> <JCHEM_REFRACTIVITY>
97.86970000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.52e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl 20-methyl-8,16-diazahexacyclo[10.6.1.1⁹,¹².0¹,⁹.0²,⁷.0¹⁶,¹⁹]icosa-2,4,6,13-tetraene-10-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0      -0.359  -7.346   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.103  -7.830   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       2.253  -6.807   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.715  -7.291   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.942  -5.298   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.469  -4.583   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.022  -3.153   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.587  -2.722   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.236  -1.283   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.281  -0.067   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       1.269  -0.284   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0       2.576   0.567   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.733  -0.458   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.287  -2.044   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.766  -1.796   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.811  -1.671   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.475  -0.282   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.010  -0.161   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.882  -1.431   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.219  -2.820   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.683  -2.941   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0       4.741  -4.161   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0       3.257  -3.771   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.391  -4.398   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.097  -5.232   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   23                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   15   24                                             
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   15                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16   23                                             
CONECT   15   14    7   11                                                  
CONECT   16   14   17   21                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   16   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22    5   14   24                                             
CONECT   24   23    7   25                                                  
CONECT   25   24                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   60    0
END

View in JSmol

Synonyms

Value	Source
Methyl 6,7-didehydro-2,20-cycloaspidospermidine-3-carboxylic acid	Generator
Vindolinine	MeSH
Vindolinine, dihydrochloride, (2alpha,3beta,5alpha,12beta,19alpha,20R)-isomer	MeSH
Methyl 20-methyl-8,16-diazahexacyclo[10.6.1.1⁹,¹².0¹,⁹.0²,⁷.0¹⁶,¹⁹]icosa-2,4,6,13-tetraene-10-carboxylic acid	Generator

Chemical Formula

C₂₁H₂₄N₂O₂

Average Mass

336.4350 Da

Monoisotopic Mass

336.18378 Da

IUPAC Name

methyl 20-methyl-8,16-diazahexacyclo[10.6.1.1⁹,¹².0¹,⁹.0²,⁷.0¹⁶,¹⁹]icosa-2,4,6,13-tetraene-10-carboxylate

Traditional Name

methyl 20-methyl-8,16-diazahexacyclo[10.6.1.1⁹,¹².0¹,⁹.0²,⁷.0¹⁶,¹⁹]icosa-2,4,6,13-tetraene-10-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1CC23C=CCN4CCC5(C24)C2=CC=CC=C2NC15C3C

InChI Identifier

InChI=1S/C21H24N2O2/c1-13-19-8-5-10-23-11-9-20(18(19)23)14-6-3-4-7-16(14)22-21(13,20)15(12-19)17(24)25-2/h3-8,13,15,18,22H,9-12H2,1-2H3

InChI Key

JSLDLCGKZDUQSH-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Catharanthus lanceus	LOTUS Database	35616633
Catharanthus roseus	LOTUS Database	35616633
Catharanthus trichophyllus	LOTUS Database	35616633
Melodinus fusiformis	LOTUS Database	35616633
Melodinus suaveolens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Carbazoles

Direct Parent

Carbazoles

Alternative Parents

Substituents

Carbazole
2,3-cyclopentanoindoline
Aromatic monoterpenoid
Monoterpenoid
Norbornane monoterpenoid
Dihydroindole
Secondary aliphatic/aromatic amine
Aralkylamine
Benzenoid
N-alkylpyrrolidine
Pyrrolidine
Methyl ester
Amino acid or derivatives
Carboxylic acid ester
Tertiary amine
Tertiary aliphatic amine
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Azacycle
Secondary amine
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Organic oxide
Organopnictogen compound
Amine
Carbonyl group
Organic oxygen compound
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.48	ALOGPS
logP	2	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	17.49	ChemAxon
pKa (Strongest Basic)	9.14	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	41.57 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	97.87 m³·mol⁻¹	ChemAxon
Polarizability	36.92 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

120879

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Vindolinine (NP0137573)

MOL for NP0137573 (Vindolinine)

3D MOL for NP0137573 (Vindolinine)

3D SDF for NP0137573 (Vindolinine)

3D-SDF for NP0137573 (Vindolinine)

PDB for NP0137573 (Vindolinine)

3D PDB for NP0137573 (Vindolinine)

SMILES for NP0137573 (Vindolinine)

INCHI for NP0137573 (Vindolinine)

Structure for NP0137573 (Vindolinine)

3D Structure for NP0137573 (Vindolinine)