NP-MRD: Showing NP-Card for Ginsenoside Rk1 (NP0137255)

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Record Information

Version

2.0

Created at

2022-05-30 16:46:47 UTC

Updated at

2022-05-30 16:46:47 UTC

NP-MRD ID

NP0137255

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Ginsenoside Rk1

Description

Ginsenoside Rk1 belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. Ginsenoside Rk1 is found in Centella asiatica, Panax ginseng and Panax notoginseng. Ginsenoside Rk1 is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004181500322D          

 54 59  0  0  0  0            999 V2000
   -3.0459   -1.0035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2287   -0.8906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7223   -1.5419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9051   -1.4291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3987   -2.0804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4185   -1.9676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7294   -1.2034    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9249   -2.6189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6955   -3.4114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3784   -3.8744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0297   -3.3680    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2274   -4.1690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7494   -2.5921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2812   -1.9614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0009   -1.1854    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0934   -2.1066    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3737   -2.8825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1858   -3.0277    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9055   -2.2518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7176   -2.3970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5297   -2.5422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8100   -3.3182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6221   -3.4634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1540   -2.8327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8737   -2.0567    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4055   -1.4260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1252   -0.6501    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6570   -0.0194    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.2176   -1.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7494   -0.9405    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4979   -2.3472    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3100   -2.4924    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9661   -2.9779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2464   -3.7538    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0585   -3.8990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5903   -3.2683    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4024   -3.4135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9342   -2.7828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6540   -2.0069    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6827   -4.1894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4948   -4.3347    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.1509   -4.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4312   -5.5961    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3388   -4.6749    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8070   -5.3057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2782   -3.9489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9917   -4.3631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9942   -4.7234    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4661   -3.8037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9343   -4.4344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1221   -4.2891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8418   -3.5132    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5309   -4.2774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9178   -0.1264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
  8 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 26 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 24 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 37 40  1  0  0  0  0
 40 41  1  0  0  0  0
 40 42  1  0  0  0  0
 42 43  1  0  0  0  0
 42 44  1  0  0  0  0
 35 44  1  0  0  0  0
 44 45  1  0  0  0  0
 22 46  1  0  0  0  0
 46 47  1  0  0  0  0
 46 48  1  0  0  0  0
 46 49  1  0  0  0  0
 18 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 11 52  1  0  0  0  0
 17 52  1  0  0  0  0
 52 53  1  0  0  0  0
  2 54  1  0  0  0  0
M  END

     RDKit          3D

124129  0  0  0  0  0  0  0  0999 V2000
    6.5190   -0.5086    3.6356 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -0.4815    2.3168 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3382   -1.4820    1.5903 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2702   -0.7015    0.7450 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3000   -1.3770   -0.0274 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7069   -2.6107   -0.1132 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1193   -3.7173    0.6676 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8584   -2.9396   -1.0725 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5841    0.4076    1.5495 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8816    1.5088    2.2875 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6484    1.8116    1.4640 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8076    1.0405    0.2399 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7297    1.7976   -0.7153 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5184   -0.2370    0.6897 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5534   -1.0538    1.4992 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1741   -2.2313    1.8826 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3217   -1.4278    0.6943 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6385   -0.1876    0.2389 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2711   -0.3962   -0.3453 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1406   -1.8957   -0.6279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7864   -0.1136    0.7041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1915   -0.3205    0.2387 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4178    0.6738   -0.8744 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.7041    0.5921   -1.3402 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4674    1.7010   -1.0931 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8083    2.3834   -2.2698 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3593    3.6078   -2.0300 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3892    4.6591   -1.5394 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0884    5.8545   -1.3455 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.6282    3.0419   -2.0842 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5085    2.6165   -0.0171 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.0429    3.3352    1.0540 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -8.9409   -1.8983    2.2997 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.9782    0.3240    2.0528 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4401    0.5112   -1.9918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8289   -0.6554   -2.9107 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5623    1.7478   -2.8660 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0072    0.4369   -1.5405 C   0  0  1  0  0  0  0  0  0  0  0  0
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    5.5882    1.1911   -1.0544 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.5369    2.2735    0.2039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8144    3.7606    1.5324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3466    0.6781   -0.9159 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6854   -0.7302    0.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.8908   -3.4889    2.8764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8755   -5.7006    1.3028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3010   -3.9132    1.5721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8032   -2.4616    0.2753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2899   -2.4142    3.3215 H   0  0  0  0  0  0  0  0  0  0  0  0
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 54124  1  0
M  END


  Mrv1533004181500322D          

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  2 54  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0137255

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCCC(=C)C1CCC2(C)C1C(O)CC1C3(C)CCC(OC4OC(CO)C(O)C(O)C4OC4OC(CO)C(O)C(O)C4O)C(C)(C)C3CCC21C

> <INCHI_IDENTIFIER>
InChI=1S/C42H70O12/c1-21(2)10-9-11-22(3)23-12-16-42(8)30(23)24(45)18-28-40(6)15-14-29(39(4,5)27(40)13-17-41(28,42)7)53-38-36(34(49)32(47)26(20-44)52-38)54-37-35(50)33(48)31(46)25(19-43)51-37/h10,23-38,43-50H,3,9,11-20H2,1-2,4-8H3

> <INCHI_KEY>
KWDWBAISZWOAHD-UHFFFAOYSA-N

> <FORMULA>
C42H70O12

> <MOLECULAR_WEIGHT>
767.01

> <EXACT_MASS>
766.486727694

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
124

> <JCHEM_AVERAGE_POLARIZABILITY>
87.01545956463534

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(4,5-dihydroxy-2-{[16-hydroxy-2,6,6,10,11-pentamethyl-14-(6-methylhepta-1,5-dien-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-6-(hydroxymethyl)oxan-3-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
2.63

> <JCHEM_LOGP>
2.9578279276666644

> <ALOGPS_LOGS>
-4.30

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.700613050486094

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.089851345199337

> <JCHEM_PKA_STRONGEST_BASIC>
-0.44697429337079153

> <JCHEM_POLAR_SURFACE_AREA>
198.76

> <JCHEM_REFRACTIVITY>
200.15790000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.81e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(4,5-dihydroxy-2-{[16-hydroxy-2,6,6,10,11-pentamethyl-14-(6-methylhepta-1,5-dien-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-6-(hydroxymethyl)oxan-3-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 18-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-APR-15         0                                  
HETATM    1  C   UNK     0      -5.686  -1.873   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.160  -1.662   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.215  -2.878   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.690  -2.668   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.744  -3.883   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.781  -3.673   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.362  -2.246   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.726  -4.889   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.298  -6.368   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.573  -7.232   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.789  -6.287   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.158  -7.782   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.266  -4.839   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.258  -3.661   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       3.735  -2.213   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       5.774  -3.932   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.297  -5.381   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.813  -5.652   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.290  -4.203   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.806  -4.474   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      10.322  -4.746   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      10.845  -6.194   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      12.361  -6.465   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      13.354  -5.288   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      12.831  -3.839   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      13.824  -2.662   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      13.300  -1.214   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      14.293  -0.036   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      15.340  -2.933   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      16.332  -1.756   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      15.863  -4.381   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      17.379  -4.652   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      14.870  -5.559   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      15.393  -7.007   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      16.909  -7.278   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      17.902  -6.101   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      19.418  -6.372   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      20.411  -5.195   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      19.887  -3.746   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      19.941  -7.820   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      21.457  -8.091   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      18.948  -8.998   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      19.472 -10.446   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      17.432  -8.727   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      16.440  -9.904   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0       9.853  -7.371   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      11.184  -8.144   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0       9.322  -8.817   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0       8.337  -7.100   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0       7.344  -8.277   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0       5.828  -8.006   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0       5.305  -6.558   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0       4.724  -7.984   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      -3.580  -0.236   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   54                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13   52                                             
CONECT   12   11                                                            
CONECT   13   11    8   14                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18   52                                                  
CONECT   18   17   19   20   49                                             
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   46                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   33                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   26   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   24   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36   44                                                  
CONECT   36   35   37                                                       
CONECT   37   36   38   40                                                  
CONECT   38   37   39                                                       
CONECT   39   38                                                            
CONECT   40   37   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   35   45                                                  
CONECT   45   44                                                            
CONECT   46   22   47   48   49                                             
CONECT   47   46                                                            
CONECT   48   46                                                            
CONECT   49   46   18   50                                                  
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   11   17   53                                             
CONECT   53   52                                                            
CONECT   54    2                                                            
MASTER        0    0    0    0    0    0    0    0   54    0  118    0
END

View in JSmol

Synonyms

Value	Source
3beta,6alpha,12beta-Trihydroxydammar-20(21),24-diene-6-O-beta-D-glucopyranoside	MeSH

Chemical Formula

C₄₂H₇₀O₁₂

Average Mass

767.0100 Da

Monoisotopic Mass

766.48673 Da

IUPAC Name

2-[(4,5-dihydroxy-2-{[16-hydroxy-2,6,6,10,11-pentamethyl-14-(6-methylhepta-1,5-dien-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-6-(hydroxymethyl)oxan-3-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(C)=CCCC(=C)C1CCC2(C)C1C(O)CC1C3(C)CCC(OC4OC(CO)C(O)C(O)C4OC4OC(CO)C(O)C(O)C4O)C(C)(C)C3CCC21C

InChI Identifier

InChI=1S/C42H70O12/c1-21(2)10-9-11-22(3)23-12-16-42(8)30(23)24(45)18-28-40(6)15-14-29(39(4,5)27(40)13-17-41(28,42)7)53-38-36(34(49)32(47)26(20-44)52-38)54-37-35(50)33(48)31(46)25(19-43)51-37/h10,23-38,43-50H,3,9,11-20H2,1-2,4-8H3

InChI Key

KWDWBAISZWOAHD-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Centella asiatica	LOTUS Database	35616633
Panax ginseng	LOTUS Database	35616633
Panax notoginseng	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Steroidal glycoside
12-hydroxysteroid
Hydroxysteroid
Steroid
Disaccharide
Glycosyl compound
O-glycosyl compound
Oxane
Cyclic alcohol
Secondary alcohol
Polyol
Acetal
Oxacycle
Organoheterocyclic compound
Primary alcohol
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.63	ALOGPS
logP	2.96	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	12.09	ChemAxon
pKa (Strongest Basic)	-0.45	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	198.76 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	200.16 m³·mol⁻¹	ChemAxon
Polarizability	87.02 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

59806995

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Ginsenoside Rk1 (NP0137255)

MOL for NP0137255 (Ginsenoside Rk1)

3D MOL for NP0137255 (Ginsenoside Rk1)

3D SDF for NP0137255 (Ginsenoside Rk1)

3D-SDF for NP0137255 (Ginsenoside Rk1)

PDB for NP0137255 (Ginsenoside Rk1)

3D PDB for NP0137255 (Ginsenoside Rk1)

SMILES for NP0137255 (Ginsenoside Rk1)

INCHI for NP0137255 (Ginsenoside Rk1)

Structure for NP0137255 (Ginsenoside Rk1)

3D Structure for NP0137255 (Ginsenoside Rk1)