NP-MRD: Showing NP-Card for LysoPC(P-16:0/0:0) (NP0136798)

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Record Information

Version

2.0

Created at

2022-05-12 15:23:54 UTC

Updated at

2022-05-12 15:23:54 UTC

NP-MRD ID

NP0136798

Secondary Accession Numbers

None

Natural Product Identification

Common Name

LysoPC(P-16:0/0:0)

Description

LysoPC(P-16:0/0:0), Also known as LPC p-16:0/0:0 Or GPC(p-16:0), Belongs to the class of organic compounds known as 1-(1z-alkenyl)-glycero-3-phosphocholines. These are glycerophosphocholines that carry exactly one 1Z-alkenyl chain attached at the O1 position of a glycerol moiety through an ether linkage. Thus, lysopc(p-16:0/0:0) Is considered to be a glycerophosphocholine lipid molecule. LysoPC(P-16:0/0:0) is found in Trypanosoma brucei. LysoPC(P-16:0/0:0) Is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304202020552D          

 33 32  0  0  1  0            999 V2000
   25.3997   -8.5353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.6944   -8.9424    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   23.9893   -8.5353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.1049   -8.9424    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.2841   -8.9424    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.9393   -9.6308    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.8100   -8.5353    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   27.2172   -9.2405    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   26.4029   -7.8301    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.5152   -8.1281    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   28.2204   -8.5352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9256   -8.1280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.6308   -8.5351    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   30.3361   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.2237   -9.2404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.0379   -7.8299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.5274   -9.6790    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   22.5670   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.8500   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1329   -8.9424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4158   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6988   -8.9424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9817   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2646   -8.9424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5590   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8419   -8.9424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1248   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4077   -8.9424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6907   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9736   -8.9424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2565   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5395   -8.9424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8220   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
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  1  4  1  0  0  0  0
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  4  7  1  0  0  0  0
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  7  9  2  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
  2 17  1  1  0  0  0
 19 18  2  0  0  0  0
 20 19  1  0  0  0  0
 21 20  1  0  0  0  0
 22 21  1  0  0  0  0
 23 22  1  0  0  0  0
 24 23  1  0  0  0  0
 25 24  1  0  0  0  0
 26 25  1  0  0  0  0
 27 26  1  0  0  0  0
 28 27  1  0  0  0  0
 29 28  1  0  0  0  0
 30 29  1  0  0  0  0
 31 30  1  0  0  0  0
 32 31  1  0  0  0  0
 33 32  1  0  0  0  0
  5 18  1  0  0  0  0
M  CHG  2   8  -1  13   1
M  END

     RDKit          3D

 82 81  0  0  0  0  0  0  0  0999 V2000
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   -2.8640    1.1601   -1.8479 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1059    0.3883   -1.4596 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.7245   -0.6006   -0.5585 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1738    1.3043   -0.9024 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3050    0.5574   -0.5864 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4811    1.6344    0.0351 P   0  0  1  0  0  5  0  0  0  0  0  0
   -6.8155    2.8675    0.5935 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -8.3071    0.8415    1.2467 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2405   -0.0697    0.7621 C   0  0  0  0  0  0  0  0  0  0  0  0
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   10.3707    1.9072    1.2766 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8096    1.6574    2.0774 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5082    2.6073   -0.0719 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2893    1.1799   -0.9198 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8103    1.1359    0.8597 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6203   -0.2718    0.0972 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3597    0.8324   -2.1889 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5055    2.2155   -1.3454 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9026    0.5585   -2.3958 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5427   -0.6668   -1.2399 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8995    0.6521    0.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3568    2.0190   -0.2986 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5784    0.7333    0.5452 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2530   -0.7948   -0.1871 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9298    0.1644   -2.4979 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.0934   -1.1654   -1.5943 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4860    0.1659   -2.5901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7682   -0.0725   -0.5189 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.2555   -1.1986    2.6142 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -12.3928   -1.3194   -0.1225 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2461   -3.0711    2.2367 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.3529   -1.8009   -0.6107 H   0  0  0  0  0  0  0  0  0  0  0  0
 19 20  1  0
 19 18  1  0
 18 17  1  0
 17 16  1  0
 16 15  2  0
 15 14  1  0
 14 13  1  0
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 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  1  0
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 22 23  1  0
 23 25  1  6
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 27 28  1  0
 29 28  1  1
 29 30  1  0
 29 31  1  0
 29 32  1  0
 19 66  1  6
 20 67  1  0
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  7 47  1  0
  6 44  1  0
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  5 42  1  0
  5 43  1  0
  4 40  1  0
  4 41  1  0
  3 38  1  0
  3 39  1  0
  2 36  1  0
  2 37  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
 21 68  1  0
 21 69  1  0
 27 70  1  0
 27 71  1  0
 28 72  1  0
 28 73  1  0
 30 74  1  0
 30 75  1  0
 30 76  1  0
 31 77  1  0
 31 78  1  0
 31 79  1  0
 32 80  1  0
 32 81  1  0
 32 82  1  0
M  CHG  2  25  -1  29   1
M  END


  Mrv1652304202020552D          

 33 32  0  0  1  0            999 V2000
   25.3997   -8.5353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.6944   -8.9424    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   23.9893   -8.5353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.1049   -8.9424    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.2841   -8.9424    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   26.8100   -8.5353    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   27.2172   -9.2405    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
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   28.2204   -8.5352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   29.6308   -8.5351    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   30.3361   -8.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   17.5590   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   14.6907   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   11.8220   -8.5344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
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  1  4  1  0  0  0  0
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 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
  2 17  1  1  0  0  0
 19 18  2  0  0  0  0
 20 19  1  0  0  0  0
 21 20  1  0  0  0  0
 22 21  1  0  0  0  0
 23 22  1  0  0  0  0
 24 23  1  0  0  0  0
 25 24  1  0  0  0  0
 26 25  1  0  0  0  0
 27 26  1  0  0  0  0
 28 27  1  0  0  0  0
 29 28  1  0  0  0  0
 30 29  1  0  0  0  0
 31 30  1  0  0  0  0
 32 31  1  0  0  0  0
 33 32  1  0  0  0  0
  5 18  1  0  0  0  0
M  CHG  2   8  -1  13   1
M  END
> <DATABASE_ID>
NP0136798

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@](O)(CO\C=C/CCCCCCCCCCCCCC)COP([O-])(=O)OCC[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C24H50NO6P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-20-29-22-24(26)23-31-32(27,28)30-21-19-25(2,3)4/h18,20,24,26H,5-17,19,21-23H2,1-4H3/b20-18-/t24-/m1/s1

> <INCHI_KEY>
HTZINLFNXLXRBC-CQLBIITFSA-N

> <FORMULA>
C24H50NO6P

> <MOLECULAR_WEIGHT>
479.6307

> <EXACT_MASS>
479.337574849

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
82

> <JCHEM_AVERAGE_POLARIZABILITY>
56.249588513673395

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2R)-3-[(1Z)-hexadec-1-en-1-yloxy]-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
2.36

> <JCHEM_LOGP>
1.5855171178615872

> <ALOGPS_LOGS>
-6.13

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.662760003722955

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8553408915809362

> <JCHEM_PKA_STRONGEST_BASIC>
-3.4008756404462996

> <JCHEM_POLAR_SURFACE_AREA>
88.05

> <JCHEM_REFRACTIVITY>
142.6122

> <JCHEM_ROTATABLE_BOND_COUNT>
23

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.98e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2R)-3-[(1Z)-hexadec-1-en-1-yloxy]-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 20-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-APR-20         0                                  
HETATM    1  C   UNK     0      47.413 -15.933   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      46.096 -16.692   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      44.780 -15.933   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      48.729 -16.692   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      43.464 -16.692   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      44.687 -17.977   0.000  0.00  0.00           O+0
HETATM    7  P   UNK     0      50.045 -15.933   0.000  0.00  0.00           P+0
HETATM    8  O   UNK     0      50.805 -17.249   0.000  0.00  0.00           O-1
HETATM    9  O   UNK     0      49.285 -14.616   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      51.362 -15.172   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      52.678 -15.932   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      53.994 -15.172   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      55.311 -15.932   0.000  0.00  0.00           N+1
HETATM   14  C   UNK     0      56.627 -16.692   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      54.551 -17.249   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      56.071 -14.616   0.000  0.00  0.00           C+0
HETATM   17  H   UNK     0      47.651 -18.067   0.000  0.00  0.00           H+0
HETATM   18  C   UNK     0      42.125 -15.931   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      40.787 -15.931   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      39.448 -16.692   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      38.109 -15.931   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      36.771 -16.692   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      35.433 -15.931   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      34.094 -16.692   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      32.777 -15.931   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      31.438 -16.692   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      30.100 -15.931   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      28.761 -16.692   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      27.423 -15.931   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      26.084 -16.692   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      24.745 -15.931   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      23.407 -16.692   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      22.068 -15.931   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    3    6   17                                             
CONECT    3    2    5                                                       
CONECT    4    1    7                                                       
CONECT    5    3   18                                                       
CONECT    6    2                                                            
CONECT    7    4    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13                                                            
CONECT   17    2                                                            
CONECT   18   19    5                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   64    0
END

View in JSmol

Synonyms

Value	Source
1-(1-Enyl-palmitoyl)-glycero-3-phosphocholine	ChEBI
1-(1-Enyl-palmitoyl)-GPC	ChEBI
GPC(p-16:0)	ChEBI
LPC p-16:0/0:0	ChEBI
LPC(p-16:0/0:0)	ChEBI
LysoPC p-16:0/0:0	ChEBI
Lysophosphatidylcholine(p-16:0/0:0)	ChEBI
PC p-16:0/0:0	ChEBI
PC(p-16:0/0:0)	ChEBI
Lysoplasmenylethanolamine	HMDB
Lysoplasmalogens	HMDB
Lysoplasmenylcholine	HMDB
LysoPC(P-16:0/0:0)	ChEBI

Chemical Formula

C₂₄H₅₀NO₆P

Average Mass

479.6307 Da

Monoisotopic Mass

479.33757 Da

IUPAC Name

(2-{[(2R)-3-[(1Z)-hexadec-1-en-1-yloxy]-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

Traditional Name

(2-{[(2R)-3-[(1Z)-hexadec-1-en-1-yloxy]-2-hydroxypropyl phosphono]oxy}ethyl)trimethylazanium

CAS Registry Number

Not Available

SMILES

[H][C@@](O)(CO\C=C/CCCCCCCCCCCCCC)COP([O-])(=O)OCC[N+](C)(C)C

InChI Identifier

InChI=1S/C24H50NO6P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-20-29-22-24(26)23-31-32(27,28)30-21-19-25(2,3)4/h18,20,24,26H,5-17,19,21-23H2,1-4H3/b20-18-/t24-/m1/s1

InChI Key

HTZINLFNXLXRBC-CQLBIITFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Trypanosoma brucei	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1-(1z-alkenyl)-glycero-3-phosphocholines. These are glycerophosphocholines that carry exactly one 1Z-alkenyl chain attached at the O1 position of a glycerol moiety through an ether linkage.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphocholines

Direct Parent

1-(1Z-alkenyl)-glycero-3-phosphocholines

Alternative Parents

Substituents

1-(1z-alkenyl)-glycero-3-phosphocholine
Phosphocholine
Glycerol vinyl ether
Dialkyl phosphate
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Quaternary ammonium salt
Tetraalkylammonium salt
Secondary alcohol
Alcohol
Organic salt
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Amine
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

lysophosphatidylcholine P-16:0 (CHEBI:73850 )
1Z-alkenylglycerophosphocholines (LMGP01070006 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.36	ALOGPS
logP	1.59	ChemAxon
logS	-6.1	ALOGPS
pKa (Strongest Acidic)	1.86	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	88.05 Å²	ChemAxon
Rotatable Bond Count	23	ChemAxon
Refractivity	142.61 m³·mol⁻¹	ChemAxon
Polarizability	56.25 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0010407

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10917802

PDB ID

Not Available

ChEBI ID

73850

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for LysoPC(P-16:0/0:0) (NP0136798)

MOL for NP0136798 (LysoPC(P-16:0/0:0))

3D MOL for NP0136798 (LysoPC(P-16:0/0:0))

3D SDF for NP0136798 (LysoPC(P-16:0/0:0))

3D-SDF for NP0136798 (LysoPC(P-16:0/0:0))

PDB for NP0136798 (LysoPC(P-16:0/0:0))

3D PDB for NP0136798 (LysoPC(P-16:0/0:0))

SMILES for NP0136798 (LysoPC(P-16:0/0:0))

INCHI for NP0136798 (LysoPC(P-16:0/0:0))

Structure for NP0136798 (LysoPC(P-16:0/0:0))

3D Structure for NP0136798 (LysoPC(P-16:0/0:0))