NP-MRD: Showing NP-Card for LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0) (NP0136788)

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Record Information

Version

2.0

Created at

2022-05-12 15:23:39 UTC

Updated at

2022-05-12 15:23:39 UTC

NP-MRD ID

NP0136788

Secondary Accession Numbers

None

Natural Product Identification

Common Name

LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0)

Description

LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0), Also known as LPC 20:4(5Z,8Z,11Z,14Z)/0:0 Or lysophosphatidylcholine(20:4/0:0), Belongs to the class of organic compounds known as 1-acyl-sn-glycero-3-phosphocholines. These are glycerophosphocholines in which the glycerol is esterified with a fatty acid at O-1 position, and linked at position 3 to a phosphocholine. Thus, lysopc(20:4(5Z,8Z,11Z,14Z)/0:0) Is considered to be a glycerophosphocholine lipid molecule. LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0) Is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0) is found in Trypanosoma brucei. LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0) Exists in all eukaryotes, ranging from yeast to humans.

Structure

MOL 3D MOL SDF PDB SMILES InChI

LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0)
  Mrv1652304202020512D          

 37 36  0  0  0  0            999 V2000
   23.3644   -6.5407    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   23.3644   -7.3657    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.1894   -6.5407    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.9038   -6.1282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.6183   -6.5407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.3328   -6.1282    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   27.0473   -5.7157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.7453   -6.8427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.9203   -5.4137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.6620   -6.5288    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.3644   -5.7157    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   21.9475   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.2330   -6.5288    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   20.5185   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.8041   -6.5288    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2330   -7.3538    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.0896   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0896   -5.3449    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.3755   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6614   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9472   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2331   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4081   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6940   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9799   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1549   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4408   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7266   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9016   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1875   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4734   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6484   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9343   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2202   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5060   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7919   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0778   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  6  9  1  0  0  0  0
  1 10  1  0  0  0  0
  1 11  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 17  1  0  0  0  0
 10 12  1  0  0  0  0
 13 16  1  6  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
M  CHG  2   6   1  11  -1
M  END

     RDKit          3D

 87 86  0  0  0  0  0  0  0  0999 V2000
    9.7123    2.7390    3.1228 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6007    2.1122    1.7349 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1706    1.9889    1.3090 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0422    1.3955   -0.0455 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6434    0.0017   -0.0800 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9847   -0.8993    0.8827 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3523   -2.0079    0.6242 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2171   -2.5211   -0.7652 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8176   -2.6365   -1.1794 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2908   -2.0037   -2.1914 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0030   -1.0916   -3.0618 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6230    0.3068   -3.1334 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7167    0.9403   -2.4707 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7783    0.5033   -1.4434 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3785    0.7588   -1.9117 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4020   -0.0763   -2.0142 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4899   -1.5062   -1.6608 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4442   -1.8627   -0.5960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9498   -1.5844   -1.1247 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9787   -1.9355   -0.0813 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0167   -2.4791   -0.4562 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7488   -1.6522    1.2241 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4881   -1.8293    2.3663 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6718   -0.9557    2.5013 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3578    0.4063    2.4835 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7977   -1.2915    1.5889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9680   -0.6262    2.0440 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2477   -1.0089    1.0080 P   0  0  1  0  0  5  0  0  0  0  0  0
   -6.7161   -1.5443   -0.3229 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2003   -2.1739    1.7674 O   0  0  0  0  0  1  0  0  0  0  0  0
   -8.1604    0.3443    0.6624 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8140    0.2571   -0.5632 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6303    1.4613   -0.8812 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6729    1.7744    0.0366 N   0  0  2  0  0  4  0  0  0  0  0  0
  -11.0988    0.7009    0.8797 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8653    2.2842   -0.6440 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1916    2.8556    0.9052 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4597    1.9510    3.8614 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0298    3.6102    3.1868 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7732    3.0608    3.2352 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0414    1.0812    1.7636 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1429    2.7586    1.0191 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6279    1.3850    2.0806 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6650    2.9851    1.3353 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6174    1.9772   -0.8136 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9782    1.3775   -0.3864 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5374   -0.3219   -1.1489 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7351    0.0500    0.1040 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0327   -0.6021    1.9512 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8999   -2.5962    1.4252 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5506   -3.6329   -0.6429 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9347   -2.1457   -1.4753 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1300   -3.3049   -0.6105 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2065   -2.1946   -2.4605 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9953   -1.5432   -4.1410 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1108   -1.1565   -2.8494 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2311    0.9084   -3.8956 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6400    2.0427   -2.7421 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9370   -0.4426   -0.9584 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8967    1.2690   -0.5902 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1744    1.8011   -2.2026 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4233    0.2676   -2.3882 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4491   -1.7647   -1.1649 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2712   -2.1091   -2.5533 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5387   -2.9316   -0.3244 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6027   -1.2748    0.3283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0989   -2.1572   -2.0512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1041   -0.4990   -1.3037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8574   -2.9037    2.4110 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7810   -1.6773    3.2356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0240   -1.1443    3.6015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3668    0.8252    3.3794 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9651   -2.3398    1.3966 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5804   -0.7736    0.6012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0343    0.1629   -1.3446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4616   -0.6378   -0.6407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9723    2.3557   -1.0913 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1200    1.2628   -1.8780 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.0486    1.0507    1.3831 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4033    0.4900    1.7241 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3893   -0.2056    0.3271 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5368    3.0787   -1.3670 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2892    1.4073   -1.1856 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5355    2.6757    0.1384 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8570    2.9664    1.7918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1807    2.6090    1.2430 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1186    3.8048    0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 28 30  1  1
 28 29  2  0
 28 31  1  0
 31 32  1  0
 32 33  1  0
 34 33  1  6
 34 35  1  0
 34 36  1  0
 34 37  1  0
  1 38  1  0
  1 39  1  0
  1 40  1  0
  2 41  1  0
  2 42  1  0
  3 43  1  0
  3 44  1  0
  4 45  1  0
  4 46  1  0
  5 47  1  0
  5 48  1  0
  6 49  1  0
  7 50  1  0
  8 51  1  0
  8 52  1  0
  9 53  1  0
 10 54  1  0
 11 55  1  0
 11 56  1  0
 12 57  1  0
 13 58  1  0
 14 59  1  0
 14 60  1  0
 15 61  1  0
 16 62  1  0
 17 63  1  0
 17 64  1  0
 18 65  1  0
 18 66  1  0
 19 67  1  0
 19 68  1  0
 23 69  1  0
 23 70  1  0
 24 71  1  1
 25 72  1  0
 26 73  1  0
 26 74  1  0
 32 75  1  0
 32 76  1  0
 33 77  1  0
 33 78  1  0
 35 79  1  0
 35 80  1  0
 35 81  1  0
 36 82  1  0
 36 83  1  0
 36 84  1  0
 37 85  1  0
 37 86  1  0
 37 87  1  0
M  CHG  2  30  -1  34   1
M  END

LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0)
  Mrv1652304202020512D          

 37 36  0  0  0  0            999 V2000
   23.3644   -6.5407    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   23.3644   -7.3657    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.1894   -6.5407    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.9038   -6.1282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.6183   -6.5407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.3328   -6.1282    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   27.0473   -5.7157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.7453   -6.8427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.9203   -5.4137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.6620   -6.5288    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.3644   -5.7157    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   21.9475   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.2330   -6.5288    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   20.5185   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.8041   -6.5288    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2330   -7.3538    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.0896   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0896   -5.3449    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.3755   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6614   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9472   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2331   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4081   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6940   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9799   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1549   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4408   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7266   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9016   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1875   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4734   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6484   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9343   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2202   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5060   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7919   -6.1163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0778   -6.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  6  9  1  0  0  0  0
  1 10  1  0  0  0  0
  1 11  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 17  1  0  0  0  0
 10 12  1  0  0  0  0
 13 16  1  6  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
M  CHG  2   6   1  11  -1
M  END
> <DATABASE_ID>
NP0136788

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)OC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C28H50NO7P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-28(31)34-25-27(30)26-36-37(32,33)35-24-23-29(2,3)4/h9-10,12-13,15-16,18-19,27,30H,5-8,11,14,17,20-26H2,1-4H3/b10-9-,13-12-,16-15-,19-18-/t27-/m1/s1

> <INCHI_KEY>
LAXQYRRMGGEGOH-JXRLJXCWSA-N

> <FORMULA>
C28H50NO7P

> <MOLECULAR_WEIGHT>
543.6729

> <EXACT_MASS>
543.332489471

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
87

> <JCHEM_AVERAGE_POLARIZABILITY>
60.981290302207164

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2R)-2-hydroxy-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propyl phosphono]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
2.45

> <JCHEM_LOGP>
1.5233305101949206

> <ALOGPS_LOGS>
-6.31

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.655609234867157

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8553406136269377

> <JCHEM_PKA_STRONGEST_BASIC>
-3.404003371460023

> <JCHEM_POLAR_SURFACE_AREA>
105.12

> <JCHEM_REFRACTIVITY>
165.14410000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
24

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.89e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2R)-2-hydroxy-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propyl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 20-APR-20   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0)                   
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-APR-20         0                                  
HETATM    1  P   UNK     0      43.614 -12.209   0.000  0.00  0.00           P+0
HETATM    2  O   UNK     0      43.614 -13.749   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0      45.154 -12.209   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      46.487 -11.439   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      47.821 -12.209   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      49.155 -11.439   0.000  0.00  0.00           N+1
HETATM    7  C   UNK     0      50.488 -10.669   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      49.925 -12.773   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      48.385 -10.106   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      42.302 -12.187   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      43.614 -10.669   0.000  0.00  0.00           O-1
HETATM   12  C   UNK     0      40.969 -11.417   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      39.635 -12.187   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      38.301 -11.417   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      36.968 -12.187   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      39.635 -13.727   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      35.634 -11.417   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      35.634  -9.977   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      34.301 -12.188   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      32.968 -11.417   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      31.635 -12.188   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      30.302 -11.417   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      28.762 -11.417   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      27.429 -12.188   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      26.096 -11.417   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      24.556 -11.417   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      23.223 -12.188   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      21.890 -11.417   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      20.350 -11.417   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      19.017 -12.188   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      17.684 -11.417   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      16.144 -11.417   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      14.811 -12.188   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      13.478 -11.417   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      12.145 -12.188   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      10.812 -11.417   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       9.479 -12.188   0.000  0.00  0.00           C+0
CONECT    1    2    3   10   11                                             
CONECT    2    1                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8    9                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    6                                                            
CONECT   10    1   12                                                       
CONECT   11    1                                                            
CONECT   12   13   10                                                       
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14   17                                                       
CONECT   16   13                                                            
CONECT   17   15   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   72    0
END

View in JSmol

Synonyms

Value	Source
1-(5Z,8Z,11Z,14Z-Eicosatetraenoyl)-sn-glycero-3-phosphocholine	ChEBI
1-Arachidonoyl-glycero-3-phosphocholine	ChEBI
1-Arachidonoyl-GPC	ChEBI
GPC(20:4n6)	ChEBI
LPC 20:4(5Z,8Z,11Z,14Z)/0:0	ChEBI
LPC(20:4(5Z,8Z,11Z,14Z)/0:0)	ChEBI
LysoPC 20:4(5Z,8Z,11Z,14Z)/0:0	ChEBI
Lysophosphatidylcholine(20:4(5Z,8Z,11Z,14Z)/0:0)	ChEBI
PC 20:4(5Z,8Z,11Z,14Z)/0:0	ChEBI
PC(20:4(5Z,8Z,11Z,14Z)/0:0)	ChEBI
LPC(20:4)	HMDB
LPC(20:4/0:0)	HMDB
LPC(20:4n6/0:0)	HMDB
LPC(20:4W6/0:0)	HMDB
LyPC(20:4)	HMDB
LyPC(20:4/0:0)	HMDB
LyPC(20:4n6/0:0)	HMDB
LyPC(20:4W6/0:0)	HMDB
LysoPC a C20:4	HMDB
LysoPC(20:4)	HMDB
LysoPC(20:4/0:0)	HMDB
LysoPC(20:4n6/0:0)	HMDB
LysoPC(20:4W6/0:0)	HMDB
Lysophosphatidylcholine(20:4)	HMDB
Lysophosphatidylcholine(20:4/0:0)	HMDB
Lysophosphatidylcholine(20:4n6/0:0)	HMDB
Lysophosphatidylcholine(20:4W6/0:0)	HMDB
LysoPC(20:4(5Z,8Z,11Z,14Z))	HMDB
1-(5Z,8Z,11Z,14Z-Eicosatetraenoyl)-glycero-3-phosphocholine	HMDB
1-Arachidonoylglycerophosphocholine	HMDB
LysoPC(20:4(5Z,8Z,11Z,14Z)/0:0)	ChEBI

Chemical Formula

C₂₈H₅₀NO₇P

Average Mass

543.6729 Da

Monoisotopic Mass

543.33249 Da

IUPAC Name

(2-{[(2R)-2-hydroxy-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propyl phosphono]oxy}ethyl)trimethylazanium

Traditional Name

(2-{[(2R)-2-hydroxy-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propyl phosphono]oxy}ethyl)trimethylazanium

CAS Registry Number

Not Available

SMILES

CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)OC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C

InChI Identifier

InChI=1S/C28H50NO7P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-28(31)34-25-27(30)26-36-37(32,33)35-24-23-29(2,3)4/h9-10,12-13,15-16,18-19,27,30H,5-8,11,14,17,20-26H2,1-4H3/b10-9-,13-12-,16-15-,19-18-/t27-/m1/s1

InChI Key

LAXQYRRMGGEGOH-JXRLJXCWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Trypanosoma brucei	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1-acyl-sn-glycero-3-phosphocholines. These are glycerophosphocholines in which the glycerol is esterified with a fatty acid at O-1 position, and linked at position 3 to a phosphocholine.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphocholines

Direct Parent

1-acyl-sn-glycero-3-phosphocholines

Alternative Parents

Substituents

1-acyl-sn-glycero-3-phosphocholine
Phosphocholine
Fatty acid ester
Dialkyl phosphate
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Fatty acyl
Tetraalkylammonium salt
Quaternary ammonium salt
Secondary alcohol
Carboxylic acid ester
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Organic oxide
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Alcohol
Organic oxygen compound
Organopnictogen compound
Carbonyl group
Organic salt
Amine
Hydrocarbon derivative
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

1-O-acyl-sn-glycero-3-phosphocholine (CHEBI:74344 )
lysophosphatidylcholine 20:4 (CHEBI:74344 )
Monoacylglycerophosphocholines (LMGP01050048 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.45	ALOGPS
logP	1.52	ChemAxon
logS	-6.3	ALOGPS
pKa (Strongest Acidic)	1.86	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	105.12 Å²	ChemAxon
Rotatable Bond Count	24	ChemAxon
Refractivity	165.14 m³·mol⁻¹	ChemAxon
Polarizability	60.98 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon