NP-MRD: Showing NP-Card for Tryptophyl-Aspartate (NP0136663)

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Record Information

Version

2.0

Created at

2022-05-12 15:20:19 UTC

Updated at

2022-05-12 15:20:19 UTC

NP-MRD ID

NP0136663

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Tryptophyl-Aspartate

Description

Tryptophyl-Aspartate, also known as W-D dipeptide or TRP-asp, belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. Tryptophyl-Aspartate is a very strong basic compound (based on its pKa). It is an incomplete breakdown product of protein digestion or protein catabolism. Tryptophyl-Aspartate is a dipeptide composed of tryptophan and aspartate. This dipeptide has not yet been identified in human tissues or biofluids and so it is classified as an 'Expected' metabolite. Some dipeptides are known to have physiological or cell-signaling effects although most are simply short-lived intermediates on their way to specific amino acid degradation pathways following further proteolysis.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 40 41  0  0  0  0  0  0  0  0999 V2000
   -0.7524    2.1674    1.1029 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3007    0.9734    0.4201 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9000   -0.2110    1.1479 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3713   -0.0834    1.0917 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2388    0.3195    2.0853 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5050    0.2960    1.6097 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4950   -0.1136    0.3231 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5225   -0.2959   -0.5759 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1831   -0.7315   -1.8380 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8847   -0.9843   -2.2217 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8896   -0.7848   -1.2793 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1653   -0.3533   -0.0097 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1707    0.9214    0.3644 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7932    1.9006    0.9047 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8897   -0.1382   -0.2453 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3346   -0.1036   -0.2520 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8744   -0.0938   -1.6695 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3450   -0.0566   -1.7415 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0803   -1.0674   -1.6857 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0189    1.1729   -1.8831 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8100   -1.2636    0.5414 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0233   -2.0868    1.0712 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1629   -1.4707    0.7212 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5163    2.0329    2.1315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1628    2.9580    0.7779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7419    0.9524   -0.6170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5374   -0.2986    2.1868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6166   -1.1470    0.6341 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9246    0.6033    3.0793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3604    0.5524    2.1449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5680   -0.1022   -0.2982 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9777   -0.8866   -2.5773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6164   -1.3297   -3.2236 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8364   -0.9713   -1.5282 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3606   -0.9141   -0.6728 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6548    0.8377    0.2568 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5141   -0.9846   -2.2240 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4781    0.8279   -2.1550 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9143    1.3052   -1.4505 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6422   -1.3483    1.6075 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7 12  2  0
 12 11  1  0
 11 10  2  0
 10  9  1  0
  9  8  2  0
  2 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 20  1  0
 18 19  2  0
 16 21  1  0
 21 23  1  0
 21 22  2  0
 12  4  1  0
  8  7  1  0
  1 24  1  0
  1 25  1  0
  2 26  1  6
  3 27  1  0
  3 28  1  0
  5 29  1  0
  6 30  1  0
 11 34  1  0
 10 33  1  0
  9 32  1  0
  8 31  1  0
 15 35  1  0
 16 36  1  1
 17 37  1  0
 17 38  1  0
 20 39  1  0
 23 40  1  0
M  END


  Mrv1652304062014172D          

 23 24  0  0  0  0            999 V2000
   -6.2116   -2.1177    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4971   -1.7052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4971   -0.8802    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7826   -2.1177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0681   -1.7052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3537   -2.1177    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6392   -1.7052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6392   -0.8802    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9247   -2.1177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9247   -2.9427    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2103   -1.7052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4958   -2.1177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4095   -2.9382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3974   -3.1097    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8099   -2.3952    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2579   -1.7821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5128   -0.9975    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3198   -0.8260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8718   -1.4391    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6169   -2.2237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0681   -0.8802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3537   -0.4677    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7826   -0.4677    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 12 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 15 20  1  0  0  0  0
  5 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0136663

> <DATABASE_NAME>
NP-MRD

> <SMILES>
NC(CC1=CNC2=C1C=CC=C2)C(=O)NC(CC(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H17N3O5/c16-10(14(21)18-12(15(22)23)6-13(19)20)5-8-7-17-11-4-2-1-3-9(8)11/h1-4,7,10,12,17H,5-6,16H2,(H,18,21)(H,19,20)(H,22,23)

> <INCHI_KEY>
PEEAINPHPNDNGE-UHFFFAOYSA-N

> <FORMULA>
C15H17N3O5

> <MOLECULAR_WEIGHT>
319.3126

> <EXACT_MASS>
319.116820669

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
31.503356732550998

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[2-amino-3-(1H-indol-3-yl)propanamido]butanedioic acid

> <ALOGPS_LOGP>
-1.46

> <JCHEM_LOGP>
-2.3670582556859645

> <ALOGPS_LOGS>
-2.95

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
5.247289737873704

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.440846034408666

> <JCHEM_PKA_STRONGEST_BASIC>
7.9600362505879705

> <JCHEM_POLAR_SURFACE_AREA>
145.51

> <JCHEM_REFRACTIVITY>
79.5356

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.55e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[2-amino-3-(1H-indol-3-yl)propanamido]butanedioic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-APR-20         0                                  
HETATM    1  O   UNK     0     -11.595  -3.953   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0     -10.261  -3.183   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0     -10.261  -1.643   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      -8.928  -3.953   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -7.594  -3.183   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      -6.260  -3.953   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0      -4.927  -3.183   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -4.927  -1.643   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -3.593  -3.953   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      -3.593  -5.493   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0      -2.259  -3.183   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.925  -3.953   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.764  -5.485   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0       0.742  -5.805   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0       1.512  -4.471   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.481  -3.327   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.957  -1.862   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.464  -1.542   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.494  -2.686   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.018  -4.151   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -7.594  -1.643   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -6.260  -0.873   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      -8.928  -0.873   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   21                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   16                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   20                                                  
CONECT   16   15   12   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   15                                                       
CONECT   21    5   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   48    0
END

View in JSmol

Synonyms

Value	Source
Tryptophyl-aspartic acid	Generator
L-Tryptophyl-L-aspartate	HMDB
TRP-Asp	HMDB
Tryptophan aspartate dipeptide	HMDB
Tryptophan-aspartate dipeptide	HMDB
Tryptophylaspartate	HMDB
W-D Dipeptide	HMDB
WD Dipeptide	HMDB
2-{[2-amino-1-hydroxy-3-(1H-indol-3-yl)propylidene]amino}butanedioate	Generator

Chemical Formula

C₁₅H₁₇N₃O₅

Average Mass

319.3126 Da

Monoisotopic Mass

319.11682 Da

IUPAC Name

2-[2-amino-3-(1H-indol-3-yl)propanamido]butanedioic acid

Traditional Name

2-[2-amino-3-(1H-indol-3-yl)propanamido]butanedioic acid

CAS Registry Number

Not Available

SMILES

NC(CC1=CNC2=C1C=CC=C2)C(=O)NC(CC(O)=O)C(O)=O

InChI Identifier

InChI=1S/C15H17N3O5/c16-10(14(21)18-12(15(22)23)6-13(19)20)5-8-7-17-11-4-2-1-3-9(8)11/h1-4,7,10,12,17H,5-6,16H2,(H,18,21)(H,19,20)(H,22,23)

InChI Key

PEEAINPHPNDNGE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Dipeptides

Alternative Parents

Substituents

Alpha-dipeptide
Aspartic acid or derivatives
Acyl-homoserine
N-acyl-alpha amino acid or derivatives
N-acyl-alpha-amino acid
Alpha-amino acid amide
Triptan
3-alkylindole
Alpha-amino acid or derivatives
Indole
Indole or derivatives
Aralkylamine
Fatty acyl
Substituted pyrrole
Benzenoid
Fatty amide
Dicarboxylic acid or derivatives
Heteroaromatic compound
Pyrrole
Amino acid or derivatives
Carboxamide group
Amino acid
Secondary carboxylic acid amide
Organoheterocyclic compound
Azacycle
Carboxylic acid
Primary aliphatic amine
Hydrocarbon derivative
Amine
Organic oxide
Organopnictogen compound
Organic oxygen compound
Carbonyl group
Organonitrogen compound
Organooxygen compound
Primary amine
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.5	ALOGPS
logP	-2.4	ChemAxon
logS	-3	ALOGPS
pKa (Strongest Acidic)	3.44	ChemAxon
pKa (Strongest Basic)	7.96	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	145.51 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	79.54 m³·mol⁻¹	ChemAxon
Polarizability	31.5 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0029079

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14717801

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Tryptophyl-Aspartate (NP0136663)

MOL for NP0136663 (Tryptophyl-Aspartate)

3D MOL for NP0136663 (Tryptophyl-Aspartate)

3D SDF for NP0136663 (Tryptophyl-Aspartate)

3D-SDF for NP0136663 (Tryptophyl-Aspartate)

PDB for NP0136663 (Tryptophyl-Aspartate)

3D PDB for NP0136663 (Tryptophyl-Aspartate)

SMILES for NP0136663 (Tryptophyl-Aspartate)

INCHI for NP0136663 (Tryptophyl-Aspartate)

Structure for NP0136663 (Tryptophyl-Aspartate)

3D Structure for NP0136663 (Tryptophyl-Aspartate)