NP-MRD: Showing NP-Card for Threonylarginine (NP0136640)

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Record Information

Version

2.0

Created at

2022-05-12 15:19:44 UTC

Updated at

2022-05-12 15:19:44 UTC

NP-MRD ID

NP0136640

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Threonylarginine

Description

Thr-Arg, also known as L-THR-L-arg or threonylarginine, belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. Thr-Arg is a very strong basic compound (based on its pKa). A dipeptide formed from L-threonine and L-arginine residues.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 40 39  0  0  0  0  0  0  0  0999 V2000
    6.3406   -2.2489   -0.6877 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6362   -1.2665   -0.8879 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.8166   -0.3274   -0.6387 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1521    1.0485   -0.8879 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.5271   -0.5633   -0.1033 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3662    0.1551   -0.6141 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1653   -0.3526    0.1915 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9014    0.3175   -0.2501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2700   -0.2335    0.5311 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5036    0.4311    0.0528 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4339   -0.3713   -0.6282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1515   -1.6053   -0.7867 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7273    0.0709   -1.1953 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2412   -0.9568   -2.1136 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7497    0.0672   -0.0473 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3042    1.1113    0.9400 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0246    0.3595   -0.5511 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1355    0.1391    1.9490 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9440    0.9891    2.4438 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8306   -0.3896    2.7954 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9328    1.4777   -0.3650 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5706    1.5371   -1.5988 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4627   -1.2774    0.6733 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2140   -0.1898   -1.6575 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4701    1.2368   -0.5318 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0495   -1.4422    0.0813 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3401   -0.1314    1.2537 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7316    0.1985   -1.3577 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9569    1.4347   -0.1212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3327   -1.3098    0.3390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6359    1.4496    0.2265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7047    1.0313   -1.6998 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5924   -1.7512   -1.5452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5278   -1.2216   -2.8266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7172   -0.9172    0.4272 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4719    0.6746    1.5122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1396    1.4437    1.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9288    1.9688    0.3474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8944    0.8143   -1.4131 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9666   -1.4005    2.7734 H   0  0  0  0  0  0  0  0  0  0  0  0
 16 15  1  0
 15 17  1  0
 15 13  1  0
 13 14  1  0
 13 11  1  0
 11 12  2  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  1  0
  3  2  2  0
  9 18  1  0
 18 20  1  0
 18 19  2  0
 16 36  1  0
 16 37  1  0
 16 38  1  0
 15 35  1  1
 17 39  1  0
 13 32  1  6
 14 33  1  0
 14 34  1  0
 10 31  1  0
  9 30  1  1
  8 28  1  0
  8 29  1  0
  7 26  1  0
  7 27  1  0
  6 24  1  0
  6 25  1  0
  5 23  1  0
  4 21  1  0
  4 22  1  0
  2  1  1  0
 20 40  1  0
M  END


  Mrv1652304062014132D          

 19 18  0  0  0  0            999 V2000
10048.290110048.4602    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10049.007210048.8722    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
10049.721710048.4602    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
10050.436010048.8722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10051.150510048.4602    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10050.436010049.6970    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10047.576710048.8722    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
10046.861210048.4602    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
10046.147710048.8722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10046.861210047.6352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10047.576710049.6970    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
10048.290110047.6352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10049.721710047.6352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10050.437810047.2217    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10051.870410047.2217    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
10051.154110047.6352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10052.586610047.6352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10052.586610048.4623    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
10053.302910047.2216    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  7  1  0  0  0  0
  1 12  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
  7  8  1  0  0  0  0
  7 11  1  6  0  0  0
  8  9  1  0  0  0  0
  3 13  1  6  0  0  0
 13 14  1  0  0  0  0
 16 14  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
  8 10  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0136640

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H](O)[C@H](N)C(=O)N[C@@H](CCCNC(N)=N)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C10H21N5O4/c1-5(16)7(11)8(17)15-6(9(18)19)3-2-4-14-10(12)13/h5-7,16H,2-4,11H2,1H3,(H,15,17)(H,18,19)(H4,12,13,14)/t5-,6+,7+/m1/s1

> <INCHI_KEY>
HYLXOQURIOCKIH-VQVTYTSYSA-N

> <FORMULA>
C10H21N5O4

> <MOLECULAR_WEIGHT>
275.309

> <EXACT_MASS>
275.159354176

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
27.697365197571344

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-[(2S,3R)-2-amino-3-hydroxybutanamido]-5-carbamimidamidopentanoic acid

> <ALOGPS_LOGP>
-3.59

> <JCHEM_LOGP>
-4.30802438293955

> <ALOGPS_LOGS>
-2.42

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
13.546405171683574

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.5775289723284596

> <JCHEM_PKA_STRONGEST_BASIC>
12.033716677953462

> <JCHEM_POLAR_SURFACE_AREA>
174.55

> <JCHEM_REFRACTIVITY>
77.183

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.05e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-[(2S,3R)-2-amino-3-hydroxybutanamido]-5-carbamimidamidopentanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-APR-20         0                                  
HETATM    1  C   UNK     0    8756.8088757.126   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0    8758.1478757.895   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0    8759.4818757.126   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0    8760.8148757.895   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0    8762.1488757.126   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0    8760.8148759.434   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0    8755.4778757.895   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0    8754.1418757.126   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0    8752.8098757.895   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0    8754.1418755.586   0.000  0.00  0.00           O+0
HETATM   11  N   UNK     0    8755.4778759.434   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0    8756.8088755.586   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0    8759.4818755.586   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0    8760.8178754.814   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0    8763.4918754.814   0.000  0.00  0.00           N+0
HETATM   16  C   UNK     0    8762.1548755.586   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0    8764.8288755.586   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0    8764.8288757.130   0.000  0.00  0.00           N+0
HETATM   19  N   UNK     0    8766.1658754.814   0.000  0.00  0.00           N+0
CONECT    1    2    7   12                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4   13                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4                                                            
CONECT    7    1    8   11                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    7                                                            
CONECT   12    1                                                            
CONECT   13    3   14                                                       
CONECT   14   13   16                                                       
CONECT   15   16   17                                                       
CONECT   16   14   15                                                       
CONECT   17   15   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   36    0
END

View in JSmol

Synonyms

Value	Source
L-THR-L-Arg	ChEBI
Threoninyl-arginine	ChEBI
Threonylarginine	ChEBI
TR	ChEBI
L-Threoninyl-L-arginine	HMDB
L-Threonyl-L-arginine	HMDB
N2-L-Threoninyl-L-arginine	HMDB
N2-L-Threonyl-L-arginine	HMDB
N2-Threoninylarginine	HMDB
N2-Threonylarginine	HMDB
T-R dipeptide	HMDB
TR dipeptide	HMDB
Thr-Arg	HMDB
Threonine arginine dipeptide	HMDB
Threonine-arginine dipeptide	HMDB
Threoninylarginine	HMDB
Threonyl-arginine	HMDB

Chemical Formula

C₁₀H₂₁N₅O₄

Average Mass

275.3090 Da

Monoisotopic Mass

275.15935 Da

IUPAC Name

(2S)-2-[(2S,3R)-2-amino-3-hydroxybutanamido]-5-carbamimidamidopentanoic acid

Traditional Name

(2S)-2-[(2S,3R)-2-amino-3-hydroxybutanamido]-5-carbamimidamidopentanoic acid

CAS Registry Number

Not Available

SMILES

C[C@@H](O)[C@H](N)C(=O)N[C@@H](CCCNC(N)=N)C(O)=O

InChI Identifier

InChI=1S/C10H21N5O4/c1-5(16)7(11)8(17)15-6(9(18)19)3-2-4-14-10(12)13/h5-7,16H,2-4,11H2,1H3,(H,15,17)(H,18,19)(H4,12,13,14)/t5-,6+,7+/m1/s1

InChI Key

HYLXOQURIOCKIH-VQVTYTSYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Dipeptides

Alternative Parents

Substituents

Alpha-dipeptide
N-acyl-l-alpha-amino acid
N-acyl-alpha-amino acid
N-acyl-alpha amino acid or derivatives
Alpha-amino acid amide
Alpha-amino acid or derivatives
Fatty amide
Fatty acyl
Fatty acid
N-acyl-amine
Amino acid or derivatives
Carboxamide group
Amino acid
Guanidine
Secondary carboxylic acid amide
Secondary alcohol
Carboxylic acid
Organic 1,3-dipolar compound
Monocarboxylic acid or derivatives
Propargyl-type 1,3-dipolar organic compound
Carboximidamide
Organic nitrogen compound
Primary aliphatic amine
Hydrocarbon derivative
Alcohol
Organic oxide
Carbonyl group
Organopnictogen compound
Organic oxygen compound
Amine
Primary amine
Organonitrogen compound
Organooxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

dipeptide (CHEBI:74825 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3.6	ALOGPS
logP	-4.3	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	3.58	ChemAxon
pKa (Strongest Basic)	12.03	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	174.55 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	77.18 m³·mol⁻¹	ChemAxon
Polarizability	27.7 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0029055

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

5379132

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

7016110

PDB ID

Not Available

ChEBI ID

74825

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Threonylarginine (NP0136640)

MOL for NP0136640 (Threonylarginine)

3D MOL for NP0136640 (Threonylarginine)

3D SDF for NP0136640 (Threonylarginine)

3D-SDF for NP0136640 (Threonylarginine)

PDB for NP0136640 (Threonylarginine)

3D PDB for NP0136640 (Threonylarginine)

SMILES for NP0136640 (Threonylarginine)

INCHI for NP0136640 (Threonylarginine)

Structure for NP0136640 (Threonylarginine)

3D Structure for NP0136640 (Threonylarginine)