NP-MRD: Showing NP-Card for Histidylglutamic acid (NP0136493)

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Record Information

Version

1.0

Created at

2022-05-12 15:15:56 UTC

Updated at

2022-05-12 15:15:57 UTC

NP-MRD ID

NP0136493

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Histidylglutamic acid

Description

His-Glu, also known as histidylglutamate or HE, belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. His-Glu is a very strong basic compound (based on its pKa). A dipeptide formed from L-histidine and L-glutamic acid residues.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
    0.8242    0.5332   -2.6226 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5402   -0.0897   -1.4807 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2559    0.9703   -0.7170 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0646    0.4916    0.4182 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4551   -0.7401    0.8391 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1766   -0.5931    1.9793 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2417    0.7146    2.2741 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5695    1.3698    1.3299 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4444   -0.6740   -0.6416 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6973   -1.1924    0.4452 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8842   -0.6304   -1.0992 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9629   -1.1783   -0.3273 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9683   -0.0726    0.0168 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2124    0.9704    0.8172 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1155    2.0929    1.1994 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3159    2.0674    0.8497 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6721    3.1774    1.9361 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6383   -2.3059   -0.9956 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2445   -2.6798   -2.1197 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6870   -2.9362   -0.3886 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6224   -0.2359   -3.3190 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4171    1.2506   -3.0699 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1609   -0.8950   -1.8473 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9004    1.5525   -1.4291 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5338    1.7378   -0.3122 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2689   -1.6848    0.3792 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6103   -1.3752    2.5357 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7405    1.1777    3.1157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0970   -0.1925   -2.0171 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5273   -1.5968    0.6150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2992    0.4284   -0.9141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8197   -0.4823    0.5739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8255    0.4692    1.7514 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3820    1.3740    0.2049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9044    3.0810    2.5866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9675   -3.9037   -0.5664 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  2  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 17  1  0
 15 16  2  0
 12 18  1  0
 18 20  1  0
 18 19  2  0
  8  4  1  0
  1 21  1  0
  1 22  1  0
  2 23  1  6
  3 24  1  0
  3 25  1  0
  5 26  1  0
  6 27  1  0
  7 28  1  0
 11 29  1  0
 12 30  1  1
 13 31  1  0
 13 32  1  0
 14 33  1  0
 14 34  1  0
 17 35  1  0
 20 36  1  0
M  END


  Mrv1652304062013482D          

 20 20  0  0  0  0            999 V2000
 9998.182410000.0195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9998.8969 9999.6070    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 9999.611410000.0195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10000.3263 9999.6070    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
10001.040310000.0195    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
10001.7543 9999.6070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10002.468410000.0195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10003.1845 9999.6070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10003.898510000.0195    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10003.1845 9998.7821    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10001.040310000.8450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10001.754310001.2578    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10000.326310001.2578    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9999.611410000.8450    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9998.8969 9998.7821    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
 9996.795810000.1013    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
 9996.1284 9999.6163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9996.3833 9998.8317    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
 9997.2083 9998.8317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9997.4632 9999.6163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2 15  1  1  0  0  0
  3  4  1  0  0  0  0
  3 14  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5 11  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8 10  2  0  0  0  0
 11 12  1  0  0  0  0
 11 13  2  0  0  0  0
 19 20  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 16 17  2  0  0  0  0
 16 20  1  0  0  0  0
  1 20  1  0  0  0  0
  8  9  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0136493

> <DATABASE_NAME>
NP-MRD

> <SMILES>
N[C@@H](CC1=CNC=N1)C(=O)N[C@@H](CCC(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C11H16N4O5/c12-7(3-6-4-13-5-14-6)10(18)15-8(11(19)20)1-2-9(16)17/h4-5,7-8H,1-3,12H2,(H,13,14)(H,15,18)(H,16,17)(H,19,20)/t7-,8-/m0/s1

> <INCHI_KEY>
VHOLZZKNEBBHTH-YUMQZZPRSA-N

> <FORMULA>
C11H16N4O5

> <MOLECULAR_WEIGHT>
284.272

> <EXACT_MASS>
284.112069631

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
27.300351722109003

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-[(2S)-2-amino-3-(1H-imidazol-4-yl)propanamido]pentanedioic acid

> <ALOGPS_LOGP>
-3.11

> <JCHEM_LOGP>
-6.068284983673736

> <ALOGPS_LOGS>
-1.73

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
3.849403330661955

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.070871875148758

> <JCHEM_PKA_STRONGEST_BASIC>
7.838547488505104

> <JCHEM_POLAR_SURFACE_AREA>
158.4

> <JCHEM_REFRACTIVITY>
65.58109999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.26e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-[(2S)-2-amino-3-(1H-imidazol-4-yl)propanamido]pentanedioic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-APR-20         0                                  
HETATM    1  C   UNK     0    8663.2748666.703   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0    8664.6088665.933   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0    8665.9418666.703   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0    8667.2768665.933   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0    8668.6098666.703   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0    8669.9418665.933   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0    8671.2748666.703   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0    8672.6118665.933   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0    8673.9448666.703   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0    8672.6118664.393   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0    8668.6098668.244   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0    8669.9418669.015   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0    8667.2768669.015   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0    8665.9418668.244   0.000  0.00  0.00           O+0
HETATM   15  N   UNK     0    8664.6088664.393   0.000  0.00  0.00           N+0
HETATM   16  N   UNK     0    8660.6858666.856   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0    8659.4408665.950   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0    8659.9158664.486   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0    8661.4558664.486   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0    8661.9318665.950   0.000  0.00  0.00           C+0
CONECT    1    2   20                                                       
CONECT    2    1    3   15                                                  
CONECT    3    2    4   14                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   11                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7   10    9                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    5   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    3                                                            
CONECT   15    2                                                            
CONECT   16   17   20                                                       
CONECT   17   18   16                                                       
CONECT   18   17   19                                                       
CONECT   19   20   18                                                       
CONECT   20   19   16    1                                                  
MASTER        0    0    0    0    0    0    0    0   20    0   40    0
END

View in JSmol

Synonyms

Value	Source
HE	ChEBI
Histidinyl-glutamate	ChEBI
Histidylglutamate	ChEBI
Histidylglutamic acid	ChEBI
L-His-L-glu	ChEBI
Histidinyl-glutamic acid	Generator
H-E dipeptide	HMDB
HE dipeptide	HMDB
His-Glu	HMDB
Histidine glutamic acid dipeptide	HMDB
Histidine-glutamic acid dipeptide	HMDB
Histidinylglutamate	HMDB
Histidinylglutamic acid	HMDB
Histidyl-glutamic acid	HMDB
L-Histidinyl-L-glutamate	HMDB
L-Histidinyl-L-glutamic acid	HMDB
L-Histidyl-L-glutamic acid	HMDB
N-Histidinylglutamate	HMDB
N-Histidinylglutamic acid	HMDB
N-Histidylglutamate	HMDB
N-Histidylglutamic acid	HMDB
N-L-Histidinyl-L-glutamate	HMDB
N-L-Histidinyl-L-glutamic acid	HMDB
N-L-Histidyl-L-glutamate	HMDB
N-L-Histidyl-L-glutamic acid	HMDB

Chemical Formula

C₁₁H₁₆N₄O₅

Average Mass

284.2720 Da

Monoisotopic Mass

284.11207 Da

IUPAC Name

(2S)-2-[(2S)-2-amino-3-(1H-imidazol-4-yl)propanamido]pentanedioic acid

Traditional Name

(2S)-2-[(2S)-2-amino-3-(1H-imidazol-4-yl)propanamido]pentanedioic acid

CAS Registry Number

Not Available

SMILES

N[C@@H](CC1=CNC=N1)C(=O)N[C@@H](CCC(O)=O)C(O)=O

InChI Identifier

InChI=1S/C11H16N4O5/c12-7(3-6-4-13-5-14-6)10(18)15-8(11(19)20)1-2-9(16)17/h4-5,7-8H,1-3,12H2,(H,13,14)(H,15,18)(H,16,17)(H,19,20)/t7-,8-/m0/s1

InChI Key

VHOLZZKNEBBHTH-YUMQZZPRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Dipeptides

Alternative Parents

Substituents

Alpha-dipeptide
Histidine or derivatives
Glutamic acid or derivatives
N-acyl-alpha amino acid or derivatives
N-acyl-alpha-amino acid
N-acyl-l-alpha-amino acid
Alpha-amino acid amide
Alpha-amino acid or derivatives
Imidazolyl carboxylic acid derivative
Aralkylamine
Fatty amide
Fatty acyl
Dicarboxylic acid or derivatives
Imidazole
Azole
Heteroaromatic compound
Carboxamide group
Amino acid or derivatives
Secondary carboxylic acid amide
Amino acid
Carboxylic acid
Azacycle
Organoheterocyclic compound
Primary amine
Amine
Organic oxygen compound
Organic nitrogen compound
Hydrocarbon derivative
Carbonyl group
Organic oxide
Organopnictogen compound
Organooxygen compound
Primary aliphatic amine
Organonitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

dipeptide (CHEBI:73928 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3.1	ALOGPS
logP	-6.1	ChemAxon
logS	-1.7	ALOGPS
pKa (Strongest Acidic)	3.07	ChemAxon
pKa (Strongest Basic)	7.84	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	158.4 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	65.58 m³·mol⁻¹	ChemAxon
Polarizability	27.3 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0028884

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

5374150

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

7010583

PDB ID

Not Available

ChEBI ID

73928

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Histidylglutamic acid (NP0136493)

MOL for NP0136493 (Histidylglutamic acid)

3D MOL for NP0136493 (Histidylglutamic acid)

3D SDF for NP0136493 (Histidylglutamic acid)

3D-SDF for NP0136493 (Histidylglutamic acid)

PDB for NP0136493 (Histidylglutamic acid)

3D PDB for NP0136493 (Histidylglutamic acid)

SMILES for NP0136493 (Histidylglutamic acid)

INCHI for NP0136493 (Histidylglutamic acid)

Structure for NP0136493 (Histidylglutamic acid)

3D Structure for NP0136493 (Histidylglutamic acid)