NP-MRD: Showing NP-Card for Cysteinyl-Histidine (NP0136408)

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Record Information

Version

1.0

Created at

2022-05-12 15:13:46 UTC

Updated at

2022-05-12 15:13:46 UTC

NP-MRD ID

NP0136408

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cysteinyl-Histidine

Description

Cysteinyl-Histidine, also known as C-H dipeptide or cys-his, belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. Cysteinyl-Histidine is a very strong basic compound (based on its pKa). Cysteinyl-Histidine is a dipeptide composed of cysteine and histidine. This dipeptide has not yet been identified in human tissues or biofluids and so it is classified as an 'Expected' metabolite. Some dipeptides are known to have physiological or cell-signaling effects although most are simply short-lived intermediates on their way to specific amino acid degradation pathways following further proteolysis. It was first documented in 2002 (PMID: 11941503). It is an incomplete breakdown product of protein digestion or protein catabolism (PMID: 15998253) (PMID: 15530409) (PMID: 22106092) (PMID: 18068706).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 31 31  0  0  0  0  0  0  0  0999 V2000
    2.4429   -1.4414   -0.2842 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.7943   -0.0878    0.0793 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4993    0.5427   -1.1094 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9701    2.2446   -0.7248 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.6314    0.6875    0.5309 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8030    1.8798    0.8757 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3533    0.0714    0.5651 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8383    0.8042    1.0084 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7972    0.9718   -0.0763 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3914   -0.1704   -0.7278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2608    0.0039   -1.8175 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6653   -1.1923   -2.2096 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1177   -2.1326   -1.4483 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3448   -1.4840   -0.5514 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3579    0.2643    2.2711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8354   -0.7004    2.8773 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4825    0.8384    2.8356 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0938   -1.8821   -0.9509 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3788   -2.0100    0.5884 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5717   -0.1705    0.8913 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8574    0.5003   -2.0237 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4111   -0.0567   -1.2839 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3366    2.2949   -0.4272 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2822   -0.9245    0.2649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4524    1.8357    1.2721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2978    1.5877   -0.8857 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6469    1.6480    0.2458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5752    0.9252   -2.2889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2949   -3.1840   -1.5726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8071   -1.9718    0.1665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2604    0.3078    3.2215 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  2  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
  8 15  1  0
 15 17  1  0
 15 16  2  0
 14 10  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  1
  3 21  1  0
  3 22  1  0
  4 23  1  0
  7 24  1  0
  8 25  1  1
  9 26  1  0
  9 27  1  0
 11 28  1  0
 13 29  1  0
 14 30  1  0
 17 31  1  0
M  END


  Mrv1652304062013332D          

 17 17  0  0  0  0            999 V2000
    4.4009   -2.2374    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.9884   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4009   -3.6663    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1634   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7509   -3.6663    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9259   -3.6663    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.7509   -2.2374    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.2259   -2.2374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6384   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4634   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9483   -0.8555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7329   -1.1104    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.7329   -1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9483   -2.1904    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.6384   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4634   -2.9519    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2259   -3.6663    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  4  7  1  0  0  0  0
  1  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 10 14  1  0  0  0  0
  8 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0136408

> <DATABASE_NAME>
NP-MRD

> <SMILES>
NC(CS)C(=O)NC(CC1=CN=CN1)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C9H14N4O3S/c10-6(3-17)8(14)13-7(9(15)16)1-5-2-11-4-12-5/h2,4,6-7,17H,1,3,10H2,(H,11,12)(H,13,14)(H,15,16)

> <INCHI_KEY>
LVNMAAGSAUGNIC-UHFFFAOYSA-N

> <FORMULA>
C9H14N4O3S

> <MOLECULAR_WEIGHT>
258.297

> <EXACT_MASS>
258.078661024

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
25.25970706341502

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-(2-amino-3-sulfanylpropanamido)-3-(1H-imidazol-5-yl)propanoic acid

> <ALOGPS_LOGP>
-2.42

> <JCHEM_LOGP>
-3.9442156866754843

> <ALOGPS_LOGS>
-2.65

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
9.98071759844123

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.3487190574897046

> <JCHEM_PKA_STRONGEST_BASIC>
8.09477613730514

> <JCHEM_POLAR_SURFACE_AREA>
121.10000000000002

> <JCHEM_REFRACTIVITY>
63.082699999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.83e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(2-amino-3-sulfanylpropanamido)-3-(3H-imidazol-4-yl)propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-APR-20         0                                  
HETATM    1  N   UNK     0       8.215  -4.176   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       7.445  -5.510   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       8.215  -6.844   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       5.905  -5.510   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.135  -6.844   0.000  0.00  0.00           C+0
HETATM    6  S   UNK     0       3.595  -6.844   0.000  0.00  0.00           S+0
HETATM    7  N   UNK     0       5.135  -4.176   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       9.755  -4.176   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.525  -2.843   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.065  -2.843   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.970  -1.597   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0      14.435  -2.073   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0      14.435  -3.613   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0      12.970  -4.089   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0      10.525  -5.510   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      12.065  -5.510   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       9.755  -6.844   0.000  0.00  0.00           O+0
CONECT    1    2    8                                                       
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5                                                            
CONECT    7    4                                                            
CONECT    8    1    9   15                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   14                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   10                                                       
CONECT   15    8   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   34    0
END

View in JSmol

Synonyms

Value	Source
C-H Dipeptide	HMDB
CH Dipeptide	HMDB
Cys-his	HMDB
Cysteine histidine dipeptide	HMDB
Cysteine-histidine dipeptide	HMDB
Cysteinylhistidine	HMDB
L-Cysteinyl-L-histidine	HMDB
2-[(2-Amino-1-hydroxy-3-sulfanylpropylidene)amino]-3-(1H-imidazol-5-yl)propanoate	Generator
2-[(2-Amino-1-hydroxy-3-sulphanylpropylidene)amino]-3-(1H-imidazol-5-yl)propanoate	Generator
2-[(2-Amino-1-hydroxy-3-sulphanylpropylidene)amino]-3-(1H-imidazol-5-yl)propanoic acid	Generator

Chemical Formula

C₉H₁₄N₄O₃S

Average Mass

258.2970 Da

Monoisotopic Mass

258.07866 Da

IUPAC Name

2-(2-amino-3-sulfanylpropanamido)-3-(1H-imidazol-5-yl)propanoic acid

Traditional Name

2-(2-amino-3-sulfanylpropanamido)-3-(3H-imidazol-4-yl)propanoic acid

CAS Registry Number

Not Available

SMILES

NC(CS)C(=O)NC(CC1=CN=CN1)C(O)=O

InChI Identifier

InChI=1S/C9H14N4O3S/c10-6(3-17)8(14)13-7(9(15)16)1-5-2-11-4-12-5/h2,4,6-7,17H,1,3,10H2,(H,11,12)(H,13,14)(H,15,16)

InChI Key

LVNMAAGSAUGNIC-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Dipeptides

Alternative Parents

Substituents

Alpha-dipeptide
Histidine or derivatives
N-acyl-alpha-amino acid
N-acyl-alpha amino acid or derivatives
Alpha-amino acid amide
Cysteine or derivatives
Alpha-amino acid or derivatives
Imidazolyl carboxylic acid derivative
Azole
Heteroaromatic compound
Imidazole
Amino acid or derivatives
Amino acid
Carboxamide group
Secondary carboxylic acid amide
Azacycle
Carboxylic acid
Monocarboxylic acid or derivatives
Alkylthiol
Organoheterocyclic compound
Organic nitrogen compound
Primary aliphatic amine
Organonitrogen compound
Organooxygen compound
Organosulfur compound
Primary amine
Carbonyl group
Hydrocarbon derivative
Organic oxide
Amine
Organopnictogen compound
Organic oxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2.4	ALOGPS
logP	-3.9	ChemAxon
logS	-2.6	ALOGPS
pKa (Strongest Acidic)	3.35	ChemAxon
pKa (Strongest Basic)	8.09	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	121.1 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	63.08 m³·mol⁻¹	ChemAxon
Polarizability	25.26 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0028777

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

18218196

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Lockwood TD: The transfer of reductive energy and pace of proteome turnover: a theory of integrated catabolic control. Antioxid Redox Signal. 2005 Jul-Aug;7(7-8):982-98. doi: 10.1089/ars.2005.7.982. [PubMed:15998253 ]
Negi S, Itazu M, Imanishi M, Nomura A, Sugiura Y: Creation and characteristics of unnatural CysHis(3)-type zinc finger protein. Biochem Biophys Res Commun. 2004 Dec 10;325(2):421-5. doi: 10.1016/j.bbrc.2004.10.045. [PubMed:15530409 ]
Hirabayashi K, Hanaoka K, Shimonishi M, Terai T, Komatsu T, Ueno T, Nagano T: Selective two-step labeling of proteins with an off/on fluorescent probe. Chemistry. 2011 Dec 23;17(52):14763-71. doi: 10.1002/chem.201102664. Epub 2011 Nov 22. [PubMed:22106092 ]
Laplaza CE, Holm RH: Stability and nickel binding properties of peptides designed as scaffolds for the stabilization of Ni(II)-Fe(4)S(4) bridged assemblies. J Biol Inorg Chem. 2002 Apr;7(4-5):451-60. doi: 10.1007/s00775-001-0320-4. Epub 2002 Jan 8. [PubMed:11941503 ]
Lockwood TD: Is dihydrolipoic acid among the reductive activators of parasite CysHis proteases? Exp Parasitol. 2008 Apr;118(4):604-13. doi: 10.1016/j.exppara.2007.11.001. Epub 2007 Nov 7. [PubMed:18068706 ]

Showing NP-Card for Cysteinyl-Histidine (NP0136408)

MOL for NP0136408 (Cysteinyl-Histidine)

3D MOL for NP0136408 (Cysteinyl-Histidine)

3D SDF for NP0136408 (Cysteinyl-Histidine)

3D-SDF for NP0136408 (Cysteinyl-Histidine)

PDB for NP0136408 (Cysteinyl-Histidine)

3D PDB for NP0136408 (Cysteinyl-Histidine)

SMILES for NP0136408 (Cysteinyl-Histidine)

INCHI for NP0136408 (Cysteinyl-Histidine)

Structure for NP0136408 (Cysteinyl-Histidine)

3D Structure for NP0136408 (Cysteinyl-Histidine)