NP-MRD: Showing NP-Card for Asparaginylaspartic acid (NP0136366)

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Record Information

Version

2.0

Created at

2022-05-12 15:12:42 UTC

Updated at

2022-05-12 15:12:42 UTC

NP-MRD ID

NP0136366

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Asparaginylaspartic acid

Description

Asparaginylaspartic acid, also known as N-D or L-asn-L-asp, belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. Asparaginylaspartic acid is a very strong basic compound (based on its pKa). Asparaginylaspartic acid is found in Trypanosoma brucei. It is an incomplete breakdown product of protein digestion or protein catabolism.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 29  0  0  0  0  0  0  0  0999 V2000
    4.5719    0.1125   -0.8856 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7906   -1.0189   -0.5305 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2940   -2.1605   -0.6983 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4355   -0.9438    0.0198 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9361    0.4734    0.1766 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7668    1.2537    1.0582 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5367    0.4867    0.6581 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2601    1.1251    1.7005 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4769   -0.2210   -0.0606 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8535   -0.1932    0.4368 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6560    0.5115   -0.6492 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0736    0.6461   -0.3475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8594   -0.2979   -0.5706 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5678    1.8162    0.1886 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3495   -1.5422    0.7251 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6076   -2.5444    0.5328 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6091   -1.7719    1.2050 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1856    0.9650   -1.3308 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5978    0.1089   -0.6974 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4257   -1.3961    1.0478 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7437   -1.5030   -0.6096 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9778    0.9458   -0.8337 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8427    2.2420    0.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3519    1.3435    2.0068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2340   -0.7475   -0.9254 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8923    0.4039    1.3725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1476    1.4887   -0.8208 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5097   -0.0844   -1.5728 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8345    1.7867    1.1792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0454   -1.2851    1.9656 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0
  5  4  1  0
  4  2  1  0
  2  1  1  0
  2  3  2  0
  5  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 14  1  0
 12 13  2  0
 10 15  1  0
 15 17  1  0
 15 16  2  0
  6 23  1  0
  6 24  1  0
  5 22  1  6
  4 20  1  0
  4 21  1  0
  1 18  1  0
  1 19  1  0
  9 25  1  0
 10 26  1  1
 11 27  1  0
 11 28  1  0
 14 29  1  0
 17 30  1  0
M  END


  Mrv1652304062013252D          

 17 16  0  0  0  0            999 V2000
 2498.1130 2497.1292    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 2498.1130 2497.9534    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
 2498.8250 2498.3646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 2499.5387 2497.9534    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 2498.8250 2499.1891    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
 2498.1130 2499.6023    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 2497.3989 2499.1891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 2496.6544 2499.6186    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
 2497.3989 2498.3646    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 2499.5387 2499.6023    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
 2497.3970 2496.7157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 2496.6831 2497.1292    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 2495.9692 2496.7157    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 2496.6831 2497.9534    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 2498.8269 2496.7157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 2499.5408 2497.1292    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 2498.8269 2495.8914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  6  0  0  0
  1 11  1  0  0  0  0
  1 15  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  6  0  0  0
  5  6  1  0  0  0  0
  5 10  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0136366

> <DATABASE_NAME>
NP-MRD

> <SMILES>
N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C8H13N3O6/c9-3(1-5(10)12)7(15)11-4(8(16)17)2-6(13)14/h3-4H,1-2,9H2,(H2,10,12)(H,11,15)(H,13,14)(H,16,17)/t3-,4-/m0/s1

> <INCHI_KEY>
HZYFHQOWCFUSOV-IMJSIDKUSA-N

> <FORMULA>
C8H13N3O6

> <MOLECULAR_WEIGHT>
247.207

> <EXACT_MASS>
247.080435151

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
21.79314071969071

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-[(2S)-2-amino-3-carbamoylpropanamido]butanedioic acid

> <ALOGPS_LOGP>
-3.59

> <JCHEM_LOGP>
-5.545176376002391

> <ALOGPS_LOGS>
-1.55

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
5.048606540675701

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.1723368080820724

> <JCHEM_PKA_STRONGEST_BASIC>
7.348896774190998

> <JCHEM_POLAR_SURFACE_AREA>
172.80999999999997

> <JCHEM_REFRACTIVITY>
51.68770000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.99e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-[(2S)-2-amino-3-carbamoylpropanamido]butanedioic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-APR-20         0                                  
HETATM    1  C   UNK     0    4663.1444661.308   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0    4663.1444662.846   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0    4664.4734663.614   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0    4665.8064662.846   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0    4664.4734665.153   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0    4663.1444665.924   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0    4661.8114665.153   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0    4660.4224665.955   0.000  0.00  0.00           N+0
HETATM    9  O   UNK     0    4661.8114663.614   0.000  0.00  0.00           O+0
HETATM   10  N   UNK     0    4665.8064665.924   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0    4661.8084660.536   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0    4660.4754661.308   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0    4659.1434660.536   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0    4660.4754662.846   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0    4664.4774660.536   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0    4665.8094661.308   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0    4664.4774658.997   0.000  0.00  0.00           O+0
CONECT    1    2   11   15                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   10                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    5                                                            
CONECT   11    1   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15    1   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   32    0
END

View in JSmol

Synonyms

Value	Source
L-Asn-L-asp	ChEBI
N-D	ChEBI
ND	ChEBI
Asparaginylaspartate	Generator
L-Asparaginyl-L-aspartate	HMDB
Asn-asp	HMDB
Asparagine aspartate dipeptide	HMDB
Asparagine aspartic acid dipeptide	HMDB
Asparagine-aspartate dipeptide	HMDB
Asparagine-aspartic acid dipeptide	HMDB
Asparaginyl-aspartate	HMDB
Asparaginyl-aspartic acid	HMDB
L-Asparaginyl-L-aspartic acid	HMDB
N-Asparaginylaspartate	HMDB
N-Asparaginylaspartic acid	HMDB
N-D Dipeptide	HMDB
N-L-Asparaginyl-L-aspartate	HMDB
N-L-Asparaginyl-L-aspartic acid	HMDB
ND Dipeptide	HMDB

Chemical Formula

C₈H₁₃N₃O₆

Average Mass

247.2070 Da

Monoisotopic Mass

247.08044 Da

IUPAC Name

(2S)-2-[(2S)-2-amino-3-carbamoylpropanamido]butanedioic acid

Traditional Name

(2S)-2-[(2S)-2-amino-3-carbamoylpropanamido]butanedioic acid

CAS Registry Number

Not Available

SMILES

N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(O)=O)C(O)=O

InChI Identifier

InChI=1S/C8H13N3O6/c9-3(1-5(10)12)7(15)11-4(8(16)17)2-6(13)14/h3-4H,1-2,9H2,(H2,10,12)(H,11,15)(H,13,14)(H,16,17)/t3-,4-/m0/s1

InChI Key

HZYFHQOWCFUSOV-IMJSIDKUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Trypanosoma brucei	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Dipeptides

Alternative Parents

Substituents

Alpha-dipeptide
Aspartic acid or derivatives
Asparagine or derivatives
N-acyl-alpha-amino acid
N-acyl-alpha amino acid or derivatives
Acyl-homoserine
Acyl-l-homoserine
N-acyl-l-alpha-amino acid
Alpha-amino acid amide
Alpha-amino acid or derivatives
N-acyl-amine
Fatty amide
Dicarboxylic acid or derivatives
Fatty acid
Fatty acyl
Primary carboxylic acid amide
Secondary carboxylic acid amide
Amino acid
Carboxamide group
Amino acid or derivatives
Carboxylic acid
Organic nitrogen compound
Organonitrogen compound
Primary aliphatic amine
Organooxygen compound
Primary amine
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organopnictogen compound
Amine
Organic oxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

dipeptide (CHEBI:73419 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3.6	ALOGPS
logP	-5.5	ChemAxon
logS	-1.6	ALOGPS
pKa (Strongest Acidic)	3.17	ChemAxon
pKa (Strongest Basic)	7.35	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	172.81 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	51.69 m³·mol⁻¹	ChemAxon
Polarizability	21.79 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0028727

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

25145403

PDB ID

Not Available

ChEBI ID

73419

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Asparaginylaspartic acid (NP0136366)

MOL for NP0136366 (Asparaginylaspartic acid)

3D MOL for NP0136366 (Asparaginylaspartic acid)

3D SDF for NP0136366 (Asparaginylaspartic acid)

3D-SDF for NP0136366 (Asparaginylaspartic acid)

PDB for NP0136366 (Asparaginylaspartic acid)

3D PDB for NP0136366 (Asparaginylaspartic acid)

SMILES for NP0136366 (Asparaginylaspartic acid)

INCHI for NP0136366 (Asparaginylaspartic acid)

Structure for NP0136366 (Asparaginylaspartic acid)

3D Structure for NP0136366 (Asparaginylaspartic acid)