NP-MRD: Showing NP-Card for Hydroxyvalerylcarnitine (NP0092166)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-05-11 18:59:08 UTC

Updated at

2022-05-11 18:59:08 UTC

NP-MRD ID

NP0092166

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Hydroxyvalerylcarnitine

Description

Hydroxyvalerylcarnitine belongs to the class of organic compounds known as fatty acids and conjugates. These are aliphatic monocarboxylic acids with a saturated or unsaturated aliphatic tail (with at least 4 Carbon atoms). Hydroxyvalerylcarnitine is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, Hydroxyvalerylcarnitine has been detected, but not quantified in, several different foods, such as cow milks, cow milks, cow milks, and cow milks. This could make hydroxyvalerylcarnitine a potential biomarker for the consumption of these foods. Hydroxyvalerylcarnitine is classified as a member of the fatty acids and conjugates. Hydroxyvalerylcarnitine can be found in Cow milk, pasteurized, vitamin A + D added, 0% fats, Cow milk, pasteurized, vitamin A + D added, 1% fats, Cow milk, pasteurized, vitamin A + D added, 2% fats, and Cow milk, pasteurized, vitamin D added, 3.25% Fats. Hydroxyvalerylcarnitine is considered to be a slightly soluble (in water) and a weak acidic compound. Hydroxyvalerylcarnitine can be found in blood. Fatty acids and conjugates are aliphatic monocarboxylic acids with a saturated or unsaturated aliphatic tail (with at least 4 Carbon atoms).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 43 42  0  0  0  0  0  0  0  0999 V2000
    3.2542    0.4015   -1.4239 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3215   -0.7821   -0.4774 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6323   -0.3298    0.9056 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8608    0.3287    0.9071 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5904    0.5399    1.5247 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2455   -0.0881    1.6630 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3528   -1.2504    2.4688 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6595   -0.3340    0.4569 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5821    0.3236    0.2885 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4326    1.3237   -0.8060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0419    0.7540   -2.0959 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1950   -0.4551   -2.2183 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0789    1.5503   -3.2375 O   0  0  0  0  0  1  0  0  0  0  0  0
   -1.6091   -0.7242    0.0844 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9576   -0.3108   -0.0991 N   0  0  1  0  0  4  0  0  0  0  0  0
   -3.2431   -0.1833   -1.5375 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8067   -1.4289    0.3683 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3783    0.8423    0.6343 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8893    0.0578   -2.3925 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6180    1.2024   -1.0484 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3161    0.7530   -1.5341 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4262   -1.4135   -0.5747 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1821   -1.4068   -0.8216 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8057   -1.2524    1.5353 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8239    1.0035    1.6338 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5097    1.4962    0.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9604    0.8469    2.5417 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5822    0.6114    2.2359 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2567   -2.0403    1.8753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7152    0.8927    1.2392 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3335    2.1052   -0.5630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3805    1.9137   -0.9429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5814   -1.4665    0.9440 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3457   -1.3657   -0.7966 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5189   -0.7507   -2.1451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3298    0.8852   -1.8263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2686   -0.6121   -1.7417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3353   -1.9163    1.2350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7867   -0.9995    0.6374 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9419   -2.1698   -0.4457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7012    1.0791    1.4764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5632    1.7168   -0.0296 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3750    0.6523    1.1413 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 13  1  0
 11 12  2  0
  9 14  1  0
 15 14  1  6
 15 16  1  0
 15 17  1  0
 15 18  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
  2 23  1  0
  3 24  1  1
  4 25  1  0
  5 26  1  0
  5 27  1  0
  6 28  1  1
  7 29  1  0
  9 30  1  1
 10 31  1  0
 10 32  1  0
 14 33  1  0
 14 34  1  0
 16 35  1  0
 16 36  1  0
 16 37  1  0
 17 38  1  0
 17 39  1  0
 17 40  1  0
 18 41  1  0
 18 42  1  0
 18 43  1  0
M  CHG  2  13  -1  15   1
M  END


  Mrv0541 02251208172D          

 18 17  0  0  1  0            999 V2000
   11.5367   -4.7931    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.2512   -4.3806    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9656   -4.7931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9656   -5.6181    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   11.5367   -5.6181    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.6801   -4.3806    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.8223   -4.3806    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8223   -3.5556    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   11.6473   -3.5556    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9973   -3.5556    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8223   -2.7306    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9544   -6.0317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6709   -5.6181    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3873   -6.0317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1038   -5.6181    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8203   -6.0317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8203   -6.8590    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3793   -6.8276    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  1  5  1  6  0  0  0
  3  6  2  0  0  0  0
  7  1  1  0  0  0  0
  8  7  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
  8 11  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  1  0  0  0  0
 15 14  1  0  0  0  0
 16 15  1  0  0  0  0
 16 17  1  0  0  0  0
 16  5  1  0  0  0  0
 14 18  1  0  0  0  0
M  CHG  2   4  -1   8   1
M  END
> <DATABASE_ID>
NP0092166

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(O)CC(O)O[C@@H](CC([O-])=O)C[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C12H25NO5/c1-5-9(14)6-12(17)18-10(7-11(15)16)8-13(2,3)4/h9-10,12,14,17H,5-8H2,1-4H3/t9?,10-,12?/m0/s1

> <INCHI_KEY>
PSRQDLCMEPQOQH-YZRBJQDESA-N

> <FORMULA>
C12H25NO5

> <MOLECULAR_WEIGHT>
263.3306

> <EXACT_MASS>
263.173272915

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_AVERAGE_POLARIZABILITY>
28.19167683122231

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S)-3-[(1,3-dihydroxypentyl)oxy]-4-(trimethylazaniumyl)butanoate

> <ALOGPS_LOGP>
-2.42

> <JCHEM_LOGP>
-4.089304957471747

> <ALOGPS_LOGS>
-2.14

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.37714512429492

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.322947135859237

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7521767956196443

> <JCHEM_POLAR_SURFACE_AREA>
89.82000000000001

> <JCHEM_REFRACTIVITY>
88.95329999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.28e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S)-3-[(1,3-dihydroxypentyl)oxy]-4-(trimethylammonio)butanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-FEB-12         0                                  
HETATM    1  C   UNK     0      21.535  -8.947   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      22.869  -8.177   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      24.202  -8.947   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      24.202 -10.487   0.000  0.00  0.00           O-1
HETATM    5  O   UNK     0      21.535 -10.487   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      25.536  -8.177   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      20.202  -8.177   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0      20.202  -6.637   0.000  0.00  0.00           N+1
HETATM    9  C   UNK     0      21.742  -6.637   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      18.662  -6.637   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      20.202  -5.097   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.848 -11.259   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      16.186 -10.487   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      17.523 -11.259   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      18.860 -10.487   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      20.198 -11.259   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      20.198 -12.803   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      17.508 -12.745   0.000  0.00  0.00           O+0
CONECT    1    2    5    7                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4    6                                                  
CONECT    4    3                                                            
CONECT    5    1   16                                                       
CONECT    6    3                                                            
CONECT    7    1    8                                                       
CONECT    8    7    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8                                                            
CONECT   12   13                                                            
CONECT   13   12   14                                                       
CONECT   14   13   15   18                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17    5                                                  
CONECT   17   16                                                            
CONECT   18   14                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

View in JSmol

Synonyms

Value	Source
(3S)-3-[(1,3-Dihydroxypentyl)oxy]-4-(trimethylazaniumyl)butanoic acid	Generator

Chemical Formula

C₁₂H₂₅NO₅

Average Mass

263.3306 Da

Monoisotopic Mass

263.17327 Da

IUPAC Name

(3S)-3-[(1,3-dihydroxypentyl)oxy]-4-(trimethylazaniumyl)butanoate

Traditional Name

(3S)-3-[(1,3-dihydroxypentyl)oxy]-4-(trimethylammonio)butanoate

CAS Registry Number

Not Available

SMILES

CCC(O)CC(O)O[C@@H](CC([O-])=O)C[N+](C)(C)C

InChI Identifier

InChI=1S/C12H25NO5/c1-5-9(14)6-12(17)18-10(7-11(15)16)8-13(2,3)4/h9-10,12,14,17H,5-8H2,1-4H3/t9?,10-,12?/m0/s1

InChI Key

PSRQDLCMEPQOQH-YZRBJQDESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Anas platyrhynchos	FooDB	FooDB
Anatidae	FooDB	FooDB
Anser anser	FooDB	FooDB
Bison bison	FooDB	FooDB
Bos taurus	FooDB	FooDB
Bos taurus X Bison bison	FooDB	FooDB
Bubalus bubalis	FooDB	FooDB
Capra aegagrus hircus	FooDB	FooDB
Cervidae	FooDB	FooDB
Cervus canadensis	FooDB	FooDB
Columba	FooDB	FooDB
Columbidae	FooDB	FooDB
Dromaius novaehollandiae	FooDB	FooDB
Equus caballus	FooDB	FooDB
Gallus gallus	FooDB	FooDB
Lagopus muta	FooDB	FooDB
Leporidae	FooDB	FooDB
Lepus timidus	FooDB	FooDB
Melanitta fusca	FooDB	FooDB
Meleagris gallopavo	FooDB	FooDB
Numida meleagris	FooDB	FooDB
Odocoileus	FooDB	FooDB
Oryctolagus	FooDB	FooDB
Ovis aries	FooDB	FooDB
Phasianidae	FooDB	FooDB
Phasianus colchicus	FooDB	FooDB
Struthio camelus	FooDB	FooDB
Sus scrofa	FooDB	FooDB
Sus scrofa domestica	FooDB	FooDB

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty acids and conjugates. These are aliphatic monocarboxylic acids with a saturated or unsaturated aliphatic tail (with at least 4 Carbon atoms).

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Fatty acids and conjugates

Alternative Parents

Substituents

Fatty acid
Quaternary ammonium salt
Tetraalkylammonium salt
Carboxylic acid salt
Hemiacetal
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic salt
Organic zwitterion
Amine
Organic nitrogen compound
Organooxygen compound
Organonitrogen compound
Alcohol
Carbonyl group
Hydrocarbon derivative
Organopnictogen compound
Organic oxide
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2.4	ALOGPS
logP	-4.1	ChemAxon
logS	-2.1	ALOGPS
pKa (Strongest Acidic)	4.32	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	89.82 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	88.95 m³·mol⁻¹	ChemAxon
Polarizability	28.19 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0013132

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB029305

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53481699

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Hydroxyvalerylcarnitine (NP0092166)

MOL for NP0092166 (Hydroxyvalerylcarnitine)

3D MOL for NP0092166 (Hydroxyvalerylcarnitine)

3D SDF for NP0092166 (Hydroxyvalerylcarnitine)

3D-SDF for NP0092166 (Hydroxyvalerylcarnitine)

PDB for NP0092166 (Hydroxyvalerylcarnitine)

3D PDB for NP0092166 (Hydroxyvalerylcarnitine)

SMILES for NP0092166 (Hydroxyvalerylcarnitine)

INCHI for NP0092166 (Hydroxyvalerylcarnitine)

Structure for NP0092166 (Hydroxyvalerylcarnitine)

3D Structure for NP0092166 (Hydroxyvalerylcarnitine)