NP-MRD: Showing NP-Card for 2,3-Dinor-TXB2 (NP0087016)

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Record Information

Version

2.0

Created at

2022-05-11 16:37:27 UTC

Updated at

2022-05-11 16:37:27 UTC

NP-MRD ID

NP0087016

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2,3-Dinor-TXB2

Description

2,3-Dinor-TXB2 belongs to the class of organic compounds known as thromboxanes. These are eicosanoids structurally characterized by the presence of a 6-member ether containing ring. 2,3-Dinor-TXB2 is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652305221921002D          

 29 29  0  0  1  0            999 V2000
    3.5724    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    7.0125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026    5.7750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    4.9500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.0026    4.9500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.7171    4.5375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.2881    4.5375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.5737    8.2500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    5.7750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315    4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    8.6625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    8.6625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    4.1250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171    5.3625    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315    4.1250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    5.3625    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    2.8875    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  6  5  2  0  0  0  0
  7  4  1  0  0  0  0
  8  5  1  0  0  0  0
  6  9  1  4  0  0  0
 11 10  2  3  0  0  0
 13  7  1  0  0  0  0
 13 10  1  0  0  0  0
 14  8  1  1  0  0  0
 15 12  1  0  0  0  0
 15 14  1  0  0  0  0
 16 11  1  6  0  0  0
 16 14  1  0  0  0  0
 17  9  1  0  0  0  0
 18 12  1  0  0  0  0
 13 19  1  1  0  0  0
 15 20  1  1  0  0  0
 21 17  2  0  0  0  0
 22 17  1  0  0  0  0
 23 18  1  0  0  0  0
 24 16  1  0  0  0  0
 24 18  1  0  0  0  0
 13 25  1  1  0  0  0
 14 26  1  6  0  0  0
 15 27  1  6  0  0  0
 16 28  1  1  0  0  0
 29 18  1  0  0  0  0
M  END

     RDKit          3D

 54 54  0  0  0  0  0  0  0  0999 V2000
    6.8938    1.5711   -1.1056 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4328    1.3937   -0.5813 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4609    1.2208    0.8903 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2037    1.1244    1.6389 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2117    0.0582    1.4106 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5639    0.0831    0.0838 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9305    1.3495   -0.0329 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4428   -0.9420    0.0049 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2536   -0.5276   -0.3696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8732   -1.4605   -0.4721 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5763   -2.7471   -0.0145 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6640   -3.5522   -0.4229 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3760   -4.8916   -0.3102 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9037   -3.1955    0.4049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5868   -1.9511    1.1857 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5872   -1.5339    2.0385 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1243   -0.8994    0.2418 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0464   -0.4764   -0.8287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3475    0.1042   -0.3963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8307    1.2280   -0.5640 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3890    2.5264   -0.7578 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6780    3.2220    0.5527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8040    3.1349    1.0713 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6337    3.9458    1.1284 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3174    2.5185   -0.7497 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8376    1.5886   -2.2131 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4795    0.6907   -0.8010 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1203    0.4671   -1.1322 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8241    2.2314   -0.9358 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0936    0.2827    1.1007 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1368    2.0325    1.3534 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4765    1.1482    2.7680 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6621    2.1600    1.5908 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7207   -0.9294    1.6085 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4049    0.0807    2.2178 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2009   -0.1642   -0.7459 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2734    1.8376   -0.8334 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6712   -1.9672    0.2595 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0385    0.5124   -0.6231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0894   -1.5969   -1.5587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8441   -3.2752   -1.4813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4289   -4.9765   -0.0778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7711   -2.9716   -0.2589 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1109   -4.0027    1.1246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6675   -2.2251    1.8001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2037   -1.4222    2.9455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7700    0.0352    0.7864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2625   -1.3311   -1.5106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5090    0.3077   -1.4384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9960   -0.6419    0.1919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6072    1.6049   -1.1826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4238    2.4818   -1.2421 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8272    3.2499   -1.3584 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7192    3.4894    1.1533 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  7  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  1  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 24  1  0
 22 23  2  0
 17 10  1  0
  6 36  1  6
  7 37  1  0
  5 34  1  0
  5 35  1  0
  4 32  1  0
  4 33  1  0
  3 30  1  0
  3 31  1  0
  2 28  1  0
  2 29  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  8 38  1  0
  9 39  1  0
 10 40  1  6
 12 41  1  6
 13 42  1  0
 14 43  1  0
 14 44  1  0
 15 45  1  1
 16 46  1  0
 17 47  1  1
 18 48  1  0
 18 49  1  0
 19 50  1  0
 20 51  1  0
 21 52  1  0
 21 53  1  0
 24 54  1  0
M  END


  Mrv1652305221921002D          

 29 29  0  0  1  0            999 V2000
    3.5724    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    7.0125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026    5.7750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    4.9500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.0026    4.9500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.7171    4.5375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.2881    4.5375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.5737    8.2500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    5.7750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315    4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    8.6625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    8.6625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    4.1250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171    5.3625    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315    4.1250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    5.3625    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    2.8875    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  6  5  2  0  0  0  0
  7  4  1  0  0  0  0
  8  5  1  0  0  0  0
  6  9  1  4  0  0  0
 11 10  2  3  0  0  0
 13  7  1  0  0  0  0
 13 10  1  0  0  0  0
 14  8  1  1  0  0  0
 15 12  1  0  0  0  0
 15 14  1  0  0  0  0
 16 11  1  6  0  0  0
 16 14  1  0  0  0  0
 17  9  1  0  0  0  0
 18 12  1  0  0  0  0
 13 19  1  1  0  0  0
 15 20  1  1  0  0  0
 21 17  2  0  0  0  0
 22 17  1  0  0  0  0
 23 18  1  0  0  0  0
 24 16  1  0  0  0  0
 24 18  1  0  0  0  0
 13 25  1  1  0  0  0
 14 26  1  6  0  0  0
 15 27  1  6  0  0  0
 16 28  1  1  0  0  0
 29 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0087016

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@](O)(CCCCC)C=C[C@@]1([H])OC([H])(O)C[C@]([H])(O)[C@]1([H])CC=CCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C18H30O6/c1-2-3-4-7-13(19)10-11-16-14(8-5-6-9-17(21)22)15(20)12-18(23)24-16/h5-6,10-11,13-16,18-20,23H,2-4,7-9,12H2,1H3,(H,21,22)/t13-,14-,15-,16+,18?/m0/s1

> <INCHI_KEY>
RJHNVFKNIJQTQF-RDEFKLACSA-N

> <FORMULA>
C18H30O6

> <MOLECULAR_WEIGHT>
342.4272

> <EXACT_MASS>
342.204238692

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
38.11132771190172

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[(2R,3S,4S)-4,6-dihydroxy-2-[(3S)-3-hydroxyoct-1-en-1-yl]oxan-3-yl]pent-3-enoic acid

> <ALOGPS_LOGP>
2.34

> <JCHEM_LOGP>
2.0338474116666654

> <ALOGPS_LOGS>
-2.74

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.371416097209188

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.203837655199558

> <JCHEM_PKA_STRONGEST_BASIC>
-2.846875496999737

> <JCHEM_POLAR_SURFACE_AREA>
107.22000000000001

> <JCHEM_REFRACTIVITY>
91.98239999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.19e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-[(2R,3S,4S)-4,6-dihydroxy-2-[(3S)-3-hydroxyoct-1-en-1-yl]oxan-3-yl]pent-3-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 22-MAY-19   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   22-MAY-19         0                                  
HETATM    1  C   UNK     0       6.668   8.470   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.002   9.240   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.336   8.470   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.669   9.240   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      17.338  11.550   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      17.338  13.090   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.003   8.470   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      18.672  10.780   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      16.004  13.860   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      14.670   8.470   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      16.004   9.240   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      20.005   6.930   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      13.337   9.240   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      18.672   9.240   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      20.005   8.470   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      17.338   8.470   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      16.004  15.400   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      18.672   6.160   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      13.337  10.780   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      21.339   9.240   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      17.338  16.170   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      14.670  16.170   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      18.672   4.620   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      17.338   6.930   0.000  0.00  0.00           O+0
HETATM   25  H   UNK     0      13.337   7.700   0.000  0.00  0.00           H+0
HETATM   26  H   UNK     0      20.005  10.010   0.000  0.00  0.00           H+0
HETATM   27  H   UNK     0      21.339   7.700   0.000  0.00  0.00           H+0
HETATM   28  H   UNK     0      17.338  10.010   0.000  0.00  0.00           H+0
HETATM   29  H   UNK     0      17.338   5.390   0.000  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    7                                                       
CONECT    5    6    8                                                       
CONECT    6    5    9                                                       
CONECT    7    4   13                                                       
CONECT    8    5   14                                                       
CONECT    9    6   17                                                       
CONECT   10   11   13                                                       
CONECT   11   10   16                                                       
CONECT   12   15   18                                                       
CONECT   13    7   10   19   25                                             
CONECT   14    8   15   16   26                                             
CONECT   15   12   14   20   27                                             
CONECT   16   11   14   24   28                                             
CONECT   17    9   21   22                                                  
CONECT   18   12   23   24   29                                             
CONECT   19   13                                                            
CONECT   20   15                                                            
CONECT   21   17                                                            
CONECT   22   17                                                            
CONECT   23   18                                                            
CONECT   24   16   18                                                       
CONECT   25   13                                                            
CONECT   26   14                                                            
CONECT   27   15                                                            
CONECT   28   16                                                            
CONECT   29   18                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₃₀O₆

Average Mass

342.4272 Da

Monoisotopic Mass

342.20424 Da

IUPAC Name

5-[(2R,3S,4S)-4,6-dihydroxy-2-[(3S)-3-hydroxyoct-1-en-1-yl]oxan-3-yl]pent-3-enoic acid

Traditional Name

5-[(2R,3S,4S)-4,6-dihydroxy-2-[(3S)-3-hydroxyoct-1-en-1-yl]oxan-3-yl]pent-3-enoic acid

CAS Registry Number

Not Available

SMILES

[H][C@](O)(CCCCC)C=C[C@@]1([H])OC([H])(O)C[C@]([H])(O)[C@]1([H])CC=CCC(O)=O

InChI Identifier

InChI=1S/C18H30O6/c1-2-3-4-7-13(19)10-11-16-14(8-5-6-9-17(21)22)15(20)12-18(23)24-16/h5-6,10-11,13-16,18-20,23H,2-4,7-9,12H2,1H3,(H,21,22)/t13-,14-,15-,16+,18?/m0/s1

InChI Key

RJHNVFKNIJQTQF-RDEFKLACSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Anas platyrhynchos	FooDB	FooDB
Anatidae	FooDB	FooDB
Anser anser	FooDB	FooDB
Bison bison	FooDB	FooDB
Bos taurus	FooDB	FooDB
Bos taurus X Bison bison	FooDB	FooDB
Bubalus bubalis	FooDB	FooDB
Capra aegagrus hircus	FooDB	FooDB
Cervidae	FooDB	FooDB
Cervus canadensis	FooDB	FooDB
Columba	FooDB	FooDB
Columbidae	FooDB	FooDB
Dromaius novaehollandiae	FooDB	FooDB
Equus caballus	FooDB	FooDB
Gallus gallus	FooDB	FooDB
Lagopus muta	FooDB	FooDB
Leporidae	FooDB	FooDB
Lepus timidus	FooDB	FooDB
Melanitta fusca	FooDB	FooDB
Meleagris gallopavo	FooDB	FooDB
Numida meleagris	FooDB	FooDB
Odocoileus	FooDB	FooDB
Oryctolagus	FooDB	FooDB
Ovis aries	FooDB	FooDB
Phasianidae	FooDB	FooDB
Phasianus colchicus	FooDB	FooDB
Struthio camelus	FooDB	FooDB
Sus scrofa	FooDB	FooDB
Sus scrofa domestica	FooDB	FooDB

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as thromboxanes. These are eicosanoids structurally characterized by the presence of a 6-member ether containing ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Thromboxanes

Alternative Parents

Substituents

Thromboxane
Medium-chain hydroxy acid
Medium-chain fatty acid
Heterocyclic fatty acid
Hydroxy fatty acid
Oxane
Fatty acid
Unsaturated fatty acid
Hemiacetal
Secondary alcohol
Oxacycle
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organoheterocyclic compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.34	ALOGPS
logP	2.03	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	4.2	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	107.22 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	91.98 m³·mol⁻¹	ChemAxon
Polarizability	38.11 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB023080

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

3246870

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 2,3-Dinor-TXB2 (NP0087016)

MOL for NP0087016 (2,3-Dinor-TXB2)

3D MOL for NP0087016 (2,3-Dinor-TXB2)

3D SDF for NP0087016 (2,3-Dinor-TXB2)

3D-SDF for NP0087016 (2,3-Dinor-TXB2)

PDB for NP0087016 (2,3-Dinor-TXB2)

3D PDB for NP0087016 (2,3-Dinor-TXB2)

SMILES for NP0087016 (2,3-Dinor-TXB2)

INCHI for NP0087016 (2,3-Dinor-TXB2)

Structure for NP0087016 (2,3-Dinor-TXB2)

3D Structure for NP0087016 (2,3-Dinor-TXB2)