NP-MRD: Showing NP-Card for 7a,12b-Dihydroxy-5b-cholan-24-oic acid (NP0086977)

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Record Information

Version

2.0

Created at

2022-05-11 16:36:17 UTC

Updated at

2022-05-11 16:36:17 UTC

NP-MRD ID

NP0086977

Secondary Accession Numbers

None

Natural Product Identification

Common Name

7a,12b-Dihydroxy-5b-cholan-24-oic acid

Description

7A,12b-dihydroxy-5b-Cholan-24-oic acid, also known as (5b,7a,12b)-7,12-dihydroxy- cholan-24-Oate, belongs to the class of organic compounds known as dihydroxy bile acids, alcohols and derivatives. Dihydroxy bile acids, alcohols and derivatives are compounds containing or derived from a bile acid or alcohol, and which bears exactly two carboxylic acid groups. Bile acids are also steroidal amphipathic molecules derived from the catabolism of cholesterol. 7A,12b-dihydroxy-5b-Cholan-24-oic acid is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. They modulate bile flow and lipid secretion, are essential for the absorption of dietary fats and vitamins, and have been implicated in the regulation of all the key enzymes involved in cholesterol homeostasis. They exist as anions at physiological pH and, consequently, require a carrier for transport across the membranes of the enterohepatic tissues. Bile acids have potent toxic properties (e.G. Membrane disruption) and there are a plethora of mechanisms to limit their accumulation in blood and tissues (PMID: 11316487 , 16037564 , 12576301 , 11907135 ).

Structure

MOL 3D MOL SDF PDB SMILES InChI

  Mrv0541 02231219322D          

 33 36  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END

  Mrv0541 02231219322D          

 33 36  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0086977

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@]1(CC[C@@]2([H])[C@]3([H])[C@H](O)C[C@]4([H])CCCC[C@]4(C)[C@@]3([H])C[C@@H](O)[C@]12C)[C@H](C)CCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C24H40O4/c1-14(7-10-21(27)28)16-8-9-17-22-18(13-20(26)24(16,17)3)23(2)11-5-4-6-15(23)12-19(22)25/h14-20,22,25-26H,4-13H2,1-3H3,(H,27,28)/t14-,15+,16-,17+,18+,19-,20-,22+,23+,24-/m1/s1

> <INCHI_KEY>
ZHCAAZIHTDCFJX-CIKBIKKZSA-N

> <FORMULA>
C24H40O4

> <MOLECULAR_WEIGHT>
392.572

> <EXACT_MASS>
392.292659768

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
46.288369242456845

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4R)-4-[(1S,2S,7S,9R,10R,11S,14R,15R,16R)-9,16-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl]pentanoic acid

> <ALOGPS_LOGP>
3.16

> <JCHEM_LOGP>
3.869212983666668

> <ALOGPS_LOGS>
-4.20

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.475011784581372

> <JCHEM_PKA_STRONGEST_BASIC>
-0.1879036357499263

> <JCHEM_POLAR_SURFACE_AREA>
77.75999999999999

> <JCHEM_REFRACTIVITY>
109.11979999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.49e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7a,12b-dihydroxy-5b-cholanate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  O   UNK     0      38.714 -23.290   0.000  0.00  0.00           O+0
HETATM    2  O   UNK     0      40.081 -30.269   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0      45.954 -20.104   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0      46.504 -22.714   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      40.048 -25.600   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      40.048 -27.140   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      38.714 -27.910   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      37.380 -27.140   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      35.979 -27.921   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      41.505 -25.131   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      38.714 -24.830   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      37.380 -25.600   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      35.967 -29.525   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      41.505 -27.609   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      38.739 -29.514   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      42.404 -26.370   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      37.356 -30.327   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      34.551 -27.052   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      40.048 -24.060   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      41.983 -23.667   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      34.526 -30.372   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      35.991 -26.381   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      33.092 -27.865   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      33.079 -29.536   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      43.490 -23.350   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      40.955 -22.521   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      43.969 -21.886   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      45.476 -21.568   0.000  0.00  0.00           C+0
HETATM   29  H   UNK     0      40.178 -28.365   0.000  0.00  0.00           H+0
HETATM   30  H   UNK     0      39.786 -28.518   0.000  0.00  0.00           H+0
HETATM   31  H   UNK     0      38.447 -26.524   0.000  0.00  0.00           H+0
HETATM   32  H   UNK     0      42.722 -24.940   0.000  0.00  0.00           H+0
HETATM   33  H   UNK     0      35.971 -30.757   0.000  0.00  0.00           H+0
CONECT    1   11                                                            
CONECT    2   15                                                            
CONECT    3   28                                                            
CONECT    4   28                                                            
CONECT    5    6   10   11   19                                             
CONECT    6    5    7   14   29                                             
CONECT    7    6    8   15   30                                             
CONECT    8    7    9   12   31                                             
CONECT    9    8   13   18   22                                             
CONECT   10    5   16   20   32                                             
CONECT   11    1    5   12                                                  
CONECT   12    8   11                                                       
CONECT   13    9   17   21   33                                             
CONECT   14    6   16                                                       
CONECT   15    2    7   17                                                  
CONECT   16   10   14                                                       
CONECT   17   13   15                                                       
CONECT   18    9   23                                                       
CONECT   19    5                                                            
CONECT   20   10   25   26                                                  
CONECT   21   13   24                                                       
CONECT   22    9                                                            
CONECT   23   18   24                                                       
CONECT   24   21   23                                                       
CONECT   25   20   27                                                       
CONECT   26   20                                                            
CONECT   27   25   28                                                       
CONECT   28    3    4   27                                                  
CONECT   29    6                                                            
CONECT   30    7                                                            
CONECT   31    8                                                            
CONECT   32   10                                                            
CONECT   33   13                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   72    0
END

View in JSmol

Synonyms

Value	Source
7a,12b-Dihydroxy-5b-cholan-24-Oate	Generator
(5b,7a,12b)-7,12-Dihydroxy- cholan-24-Oate	HMDB
(5b,7a,12b)-7,12-Dihydroxy- cholan-24-Oic acid	HMDB
7a,12b-Dihydroxy-5b-cholanate	HMDB
7a,12b-Dihydroxy-5b-cholanic acid	HMDB
7a,12b-Dihydroxy-5b-cholanoate	HMDB
7a,12b-Dihydroxy-5b-cholanoic acid	HMDB
(4R)-4-[(1S,2S,7S,9R,10R,11S,14R,15R,16R)-9,16-Dihydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl]pentanoate	HMDB

Chemical Formula

C₂₄H₄₀O₄

Average Mass

392.5720 Da

Monoisotopic Mass

392.29266 Da

IUPAC Name

(4R)-4-[(1S,2S,7S,9R,10R,11S,14R,15R,16R)-9,16-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl]pentanoic acid

Traditional Name

7a,12b-dihydroxy-5b-cholanate

CAS Registry Number

Not Available

SMILES

[H][C@@]1(CC[C@@]2([H])[C@]3([H])[C@H](O)C[C@]4([H])CCCC[C@]4(C)[C@@]3([H])C[C@@H](O)[C@]12C)[C@H](C)CCC(O)=O

InChI Identifier

InChI=1S/C24H40O4/c1-14(7-10-21(27)28)16-8-9-17-22-18(13-20(26)24(16,17)3)23(2)11-5-4-6-15(23)12-19(22)25/h14-20,22,25-26H,4-13H2,1-3H3,(H,27,28)/t14-,15+,16-,17+,18+,19-,20-,22+,23+,24-/m1/s1

InChI Key

ZHCAAZIHTDCFJX-CIKBIKKZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Anas platyrhynchos	FooDB	FooDB
Anatidae	FooDB	FooDB
Anser anser	FooDB	FooDB
Bison bison	FooDB	FooDB
Bos taurus	FooDB	FooDB
Bos taurus X Bison bison	FooDB	FooDB
Bubalus bubalis	FooDB	FooDB
Capra aegagrus hircus	FooDB	FooDB
Cervidae	FooDB	FooDB
Cervus canadensis	FooDB	FooDB
Columba	FooDB	FooDB
Columbidae	FooDB	FooDB
Dromaius novaehollandiae	FooDB	FooDB
Equus caballus	FooDB	FooDB
Gallus gallus	FooDB	FooDB
Lagopus muta	FooDB	FooDB
Leporidae	FooDB	FooDB
Lepus timidus	FooDB	FooDB
Melanitta fusca	FooDB	FooDB
Meleagris gallopavo	FooDB	FooDB
Numida meleagris	FooDB	FooDB
Odocoileus	FooDB	FooDB
Oryctolagus	FooDB	FooDB
Ovis aries	FooDB	FooDB
Phasianidae	FooDB	FooDB
Phasianus colchicus	FooDB	FooDB
Struthio camelus	FooDB	FooDB
Sus scrofa	FooDB	FooDB
Sus scrofa domestica	FooDB	FooDB

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dihydroxy bile acids, alcohols and derivatives. Dihydroxy bile acids, alcohols and derivatives are compounds containing or derived from a bile acid or alcohol, and which bears exactly two carboxylic acid groups.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Bile acids, alcohols and derivatives

Direct Parent

Dihydroxy bile acids, alcohols and derivatives

Alternative Parents

Substituents

Dihydroxy bile acid, alcohol, or derivatives
12-hydroxysteroid
Hydroxysteroid
7-hydroxysteroid
Cyclic alcohol
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organooxygen compound
Alcohol
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Organic oxide
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

C24 bile acids, alcohols, and derivatives (LMST04010050 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.16	ALOGPS
logP	3.87	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	4.48	ChemAxon
pKa (Strongest Basic)	-0.19	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	109.12 m³·mol⁻¹	ChemAxon
Polarizability	46.29 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0002488

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB023012

KNApSAcK ID

Not Available

Chemspider ID

4446926

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

6698

PubChem Compound

5283838

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for 7a,12b-Dihydroxy-5b-cholan-24-oic acid (NP0086977)

MOL for NP0086977 (7a,12b-Dihydroxy-5b-cholan-24-oic acid)

3D MOL for NP0086977 (7a,12b-Dihydroxy-5b-cholan-24-oic acid)

3D SDF for NP0086977 (7a,12b-Dihydroxy-5b-cholan-24-oic acid)

3D-SDF for NP0086977 (7a,12b-Dihydroxy-5b-cholan-24-oic acid)

PDB for NP0086977 (7a,12b-Dihydroxy-5b-cholan-24-oic acid)

3D PDB for NP0086977 (7a,12b-Dihydroxy-5b-cholan-24-oic acid)

SMILES for NP0086977 (7a,12b-Dihydroxy-5b-cholan-24-oic acid)

INCHI for NP0086977 (7a,12b-Dihydroxy-5b-cholan-24-oic acid)

Structure for NP0086977 (7a,12b-Dihydroxy-5b-cholan-24-oic acid)

3D Structure for NP0086977 (7a,12b-Dihydroxy-5b-cholan-24-oic acid)