NP-MRD: Showing NP-Card for 2-Hydroxymyristic acid (NP0086924)

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Record Information

Version

2.0

Created at

2022-05-11 16:34:48 UTC

Updated at

2022-05-11 16:34:48 UTC

NP-MRD ID

NP0086924

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-Hydroxymyristic acid

Description

2-Hydroxymyristic acid, also known as a-hydroxymyristate or a-hydroxy-N-tetradecylate, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. 2-Hydroxymyristic acid was first documented in 1993 (PMID: 8103677). 2-Hydroxymyristic acid is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 45 44  0  0  0  0  0  0  0  0999 V2000
    5.6063    1.7897   -0.6035 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1648    1.2154   -0.4336 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2335   -0.0926    0.2417 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0273   -0.8794    0.5008 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9513   -0.3703    1.3779 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2539    0.8590    0.9581 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6289    0.7013   -0.4057 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3730   -0.4029   -0.3333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0813   -0.6322   -1.6527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0527   -1.7644   -1.4681 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0707   -1.4666   -0.4081 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8441   -0.2433   -0.7850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9032    0.1037    0.2476 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8140   -0.9391    0.3893 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2818    0.4627    1.5474 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5934   -0.1509    2.6131 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3489    1.4684    1.6494 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5583    2.6982   -1.2178 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2524    0.9977   -0.9958 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9957    2.0725    0.3989 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6609    2.0397    0.0968 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7234    1.1197   -1.4410 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8247   -0.0496    1.2067 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9122   -0.7452   -0.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5147   -1.2176   -0.4572 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3138   -1.9082    0.9388 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3442   -0.2598    2.4535 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2250   -1.2294    1.5243 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3381    0.9337    1.6910 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7325    1.8159    1.1209 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4438    0.5086   -1.1327 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1741    1.6822   -0.6614 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1612   -1.3506   -0.1200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1037   -0.1218    0.4453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3322   -0.9060   -2.4316 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5420    0.3123   -1.9656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5314   -2.7194   -1.2169 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5706   -1.9549   -2.4485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8003   -2.3337   -0.3422 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6172   -1.4301    0.6016 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1499    0.6338   -0.8228 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3137   -0.4085   -1.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4409    0.9984   -0.1240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5055   -0.6248    1.0319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7704    1.7881    0.8834 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 17  1  0
 15 16  2  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  0
  2 22  1  0
  3 23  1  0
  3 24  1  0
  4 25  1  0
  4 26  1  0
  5 27  1  0
  5 28  1  0
  6 29  1  0
  6 30  1  0
  7 31  1  0
  7 32  1  0
  8 33  1  0
  8 34  1  0
  9 35  1  0
  9 36  1  0
 10 37  1  0
 10 38  1  0
 11 39  1  0
 11 40  1  0
 12 41  1  0
 12 42  1  0
 13 43  1  6
 14 44  1  0
 17 45  1  0
M  END


  Mrv0541 02231219272D          

 17 16  0  0  0  0            999 V2000
   29.2872  -12.6201    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   30.7162  -11.7951    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   30.0016  -10.5575    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   29.2872  -11.7951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.5727  -11.3826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.8582  -11.7951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.1437  -11.3826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.4292  -11.7951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.7148  -11.3826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.0003  -11.7951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.2857  -11.3826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.5713  -11.7951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.8568  -11.3826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.1424  -11.7951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.4278  -11.3826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.7133  -11.7951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.0016  -11.3826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  4  1  0  0  0  0
  2 17  1  0  0  0  0
  3 17  2  0  0  0  0
  4  5  1  0  0  0  0
  4 17  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0086924

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCC(O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C14H28O3/c1-2-3-4-5-6-7-8-9-10-11-12-13(15)14(16)17/h13,15H,2-12H2,1H3,(H,16,17)

> <INCHI_KEY>
JYZJYKOZGGEXSX-UHFFFAOYSA-N

> <FORMULA>
C14H28O3

> <MOLECULAR_WEIGHT>
244.3703

> <EXACT_MASS>
244.203844762

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_AVERAGE_POLARIZABILITY>
30.700535802333608

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-hydroxytetradecanoic acid

> <ALOGPS_LOGP>
4.71

> <JCHEM_LOGP>
4.496379527

> <ALOGPS_LOGS>
-4.11

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.284148890034412

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.255557640559995

> <JCHEM_PKA_STRONGEST_BASIC>
-3.797528712514443

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
69.37379999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.90e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-hydroxymyristic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  O   UNK     0      54.669 -23.558   0.000  0.00  0.00           O+0
HETATM    2  O   UNK     0      57.337 -22.018   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0      56.003 -19.707   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      54.669 -22.018   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      53.336 -21.248   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      52.002 -22.018   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      50.668 -21.248   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      49.335 -22.018   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      48.001 -21.248   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      46.667 -22.018   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      45.333 -21.248   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      44.000 -22.018   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      42.666 -21.248   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      41.332 -22.018   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      39.999 -21.248   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      38.665 -22.018   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      56.003 -21.248   0.000  0.00  0.00           C+0
CONECT    1    4                                                            
CONECT    2   17                                                            
CONECT    3   17                                                            
CONECT    4    1    5   17                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15                                                            
CONECT   17    2    3    4                                                  
MASTER        0    0    0    0    0    0    0    0   17    0   32    0
END

View in JSmol

Synonyms

Value	Source
alpha-Hydroxy-N-tetradecylic acid	ChEBI
alpha-Hydroxymyristic acid	ChEBI
a-Hydroxy-N-tetradecylate	Generator
a-Hydroxy-N-tetradecylic acid	Generator
alpha-Hydroxy-N-tetradecylate	Generator
Α-hydroxy-N-tetradecylate	Generator
Α-hydroxy-N-tetradecylic acid	Generator
a-Hydroxymyristate	Generator
a-Hydroxymyristic acid	Generator
alpha-Hydroxymyristate	Generator
Α-hydroxymyristate	Generator
Α-hydroxymyristic acid	Generator
2-Hydroxymyristate	Generator
2-Hydroxy-myristic-acid	HMDB
2-Hydroxytetradecanoate	HMDB
2-Hydroxytetradecanoic acid	HMDB
DL-a-Hydroxymyristate	HMDB
DL-a-Hydroxymyristic acid	HMDB
DL-alpha-Hydroxymyristate	HMDB
DL-alpha-Hydroxymyristic acid	HMDB

Chemical Formula

C₁₄H₂₈O₃

Average Mass

244.3703 Da

Monoisotopic Mass

244.20384 Da

IUPAC Name

2-hydroxytetradecanoic acid

Traditional Name

2-hydroxymyristic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCC(O)C(O)=O

InChI Identifier

InChI=1S/C14H28O3/c1-2-3-4-5-6-7-8-9-10-11-12-13(15)14(16)17/h13,15H,2-12H2,1H3,(H,16,17)

InChI Key

JYZJYKOZGGEXSX-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Anas platyrhynchos	FooDB	FooDB
Anatidae	FooDB	FooDB
Anser anser	FooDB	FooDB
Bison bison	FooDB	FooDB
Bos taurus	FooDB	FooDB
Bos taurus X Bison bison	FooDB	FooDB
Bubalus bubalis	FooDB	FooDB
Capra aegagrus hircus	FooDB	FooDB
Cervidae	FooDB	FooDB
Cervus canadensis	FooDB	FooDB
Columba	FooDB	FooDB
Columbidae	FooDB	FooDB
Dromaius novaehollandiae	FooDB	FooDB
Equus caballus	FooDB	FooDB
Gallus gallus	FooDB	FooDB
Lagopus muta	FooDB	FooDB
Leporidae	FooDB	FooDB
Lepus timidus	FooDB	FooDB
Melanitta fusca	FooDB	FooDB
Meleagris gallopavo	FooDB	FooDB
Numida meleagris	FooDB	FooDB
Odocoileus	FooDB	FooDB
Oryctolagus	FooDB	FooDB
Ovis aries	FooDB	FooDB
Phasianidae	FooDB	FooDB
Phasianus colchicus	FooDB	FooDB
Struthio camelus	FooDB	FooDB
Sus scrofa	FooDB	FooDB
Sus scrofa domestica	FooDB	FooDB

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Hydroxy fatty acid
Alpha-hydroxy acid
Hydroxy acid
Monosaccharide
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Organooxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

long-chain fatty acid (CHEBI:59270 )
2-hydroxy fatty acid (CHEBI:59270 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.71	ALOGPS
logP	4.5	ChemAxon
logS	-4.1	ALOGPS
pKa (Strongest Acidic)	4.26	ChemAxon
pKa (Strongest Basic)	-3.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	69.37 m³·mol⁻¹	ChemAxon
Polarizability	30.7 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0002261

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB022931

KNApSAcK ID

Not Available

Chemspider ID

1508

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

6579

PubChem Compound

1563

PDB ID

Not Available

ChEBI ID

59270

Good Scents ID

Not Available

References

General References

Nadler MJ, Harrison ML, Ashendel CL, Cassady JM, Geahlen RL: Treatment of T cells with 2-hydroxymyristic acid inhibits the myristoylation and alters the stability of p56lck. Biochemistry. 1993 Sep 7;32(35):9250-5. doi: 10.1021/bi00086a034. [PubMed:8103677 ]

Showing NP-Card for 2-Hydroxymyristic acid (NP0086924)

MOL for NP0086924 (2-Hydroxymyristic acid)

3D MOL for NP0086924 (2-Hydroxymyristic acid)

3D SDF for NP0086924 (2-Hydroxymyristic acid)

3D-SDF for NP0086924 (2-Hydroxymyristic acid)

PDB for NP0086924 (2-Hydroxymyristic acid)

3D PDB for NP0086924 (2-Hydroxymyristic acid)

SMILES for NP0086924 (2-Hydroxymyristic acid)

INCHI for NP0086924 (2-Hydroxymyristic acid)

Structure for NP0086924 (2-Hydroxymyristic acid)

3D Structure for NP0086924 (2-Hydroxymyristic acid)