NP-MRD: Showing NP-Card for 4-Decenoic acid (NP0086507)

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Record Information

Version

2.0

Created at

2022-05-11 16:22:44 UTC

Updated at

2022-05-11 16:22:44 UTC

NP-MRD ID

NP0086507

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4-Decenoic acid

Description

Cis-4-Decenoic acid, also known as 10:1 (N-6) or (Z)-4-decenoate, belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms. Cis-4-Decenoic acid is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Cis-4-Decenoic acid is a fruity tasting compound. Outside of the human body, cis-4-Decenoic acid has been detected, but not quantified in, alcoholic beverages. This could make cis-4-decenoic acid a potential biomarker for the consumption of these foods. 4-Decenoic acid is found in Lindera umbellata and Plumeria obtusa. 4-Decenoic acid was first documented in 2001 (PMID: 11486898). A decenoic acid having a cis- double bond at position 4.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 29  0  0  0  0  0  0  0  0999 V2000
   -4.3628    0.4920   -1.1121 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3040    0.3892   -0.0055 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5544   -0.9045   -0.2869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4657   -1.1815    0.7061 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4070   -0.0679    0.7326 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1769    0.0126   -0.6192 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4333   -0.1731   -0.8659 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4468   -0.4876    0.1590 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4648    0.6411    0.0949 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5490    0.4840    1.0555 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6368   -0.4796    1.8533 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5438    1.4453    1.0999 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9416    0.9469   -2.0305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1913    1.1584   -0.7590 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7914   -0.5049   -1.3307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6579    1.2842   -0.1021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8288    0.3711    0.9483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1684   -0.8816   -1.3186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3548   -1.7020   -0.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9619   -2.1104    0.3878 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8769   -1.3615    1.7070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9928    0.8574    0.9798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2759   -0.3461    1.5371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4996    0.2493   -1.4822 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7358   -0.0815   -1.9383 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1158   -0.5691    1.1821 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0002   -1.4074   -0.1764 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9092    0.5781   -0.9394 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9928    1.6203    0.2260 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0781    1.7289    0.2855 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 12  1  0
 10 11  2  0
  1 13  1  0
  1 14  1  0
  1 15  1  0
  2 16  1  0
  2 17  1  0
  3 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  5 22  1  0
  5 23  1  0
  6 24  1  0
  7 25  1  0
  8 26  1  0
  8 27  1  0
  9 28  1  0
  9 29  1  0
 12 30  1  0
M  END

HEADER    PROTEIN                                 20-MAR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-MAR-20         0                                  
HETATM    1  C   UNK     0    8680.2038680.486   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0    8681.7448680.486   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0    8678.8688681.254   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0    8683.0768681.254   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0    8677.5348680.486   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0    8684.4128680.486   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0    8676.2008681.254   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0    8685.7478681.254   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0    8674.8668680.486   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0    8676.2008682.795   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0    8687.0798680.486   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0    8688.4158681.254   0.000  0.00  0.00           C+0
CONECT    1    2    3                                                       
CONECT    2    1    4                                                       
CONECT    3    1    5                                                       
CONECT    4    2    6                                                       
CONECT    5    3    7                                                       
CONECT    6    4    8                                                       
CONECT    7    5    9   10                                                  
CONECT    8    6   11                                                       
CONECT    9    7                                                            
CONECT   10    7                                                            
CONECT   11    8   12                                                       
CONECT   12   11                                                            
MASTER        0    0    0    0    0    0    0    0   12    0   22    0
END

View in JSmol

Synonyms

Value	Source
(Z)-4-Decenoic acid	ChEBI
10:1 (N-6)	ChEBI
4-Decenoic acid	ChEBI
C10:1 (N-6)	ChEBI
cis-Decen-4-saeure	ChEBI
cis-Delta(4)-Decenoic acid	ChEBI
cis-Obtusilic acid	ChEBI
Dec-4C-enoic acid	ChEBI
Dec-4C-ensaeure	ChEBI
Z-4-Decenoic acid	ChEBI
(Z)-4-Decenoate	Generator
4-Decenoate	Generator
cis-delta(4)-Decenoate	Generator
cis-Δ(4)-decenoate	Generator
cis-Δ(4)-decenoic acid	Generator
cis-Obtusilate	Generator
Dec-4C-enoate	Generator
Z-4-Decenoate	Generator
cis-4-Decenoate	Generator
(4Z)-4-Decenoic acid	HMDB
4-cis-Decenoic acid	HMDB
FA(10:1(4Z))	HMDB
FA(10:1n6)	HMDB
Obtusilic acid	HMDB
Dec-4-enoic acid	HMDB
(Z)-Isomer OF 4-decenoic acid	HMDB
cis-4-Decenoic acid	HMDB

Chemical Formula

C₁₀H₁₈O₂

Average Mass

170.2487 Da

Monoisotopic Mass

170.13068 Da

IUPAC Name

(4Z)-dec-4-enoic acid

Traditional Name

4-decenoic acid

CAS Registry Number

Not Available

SMILES

CCCCC\C=C/CCC(O)=O

InChI Identifier

InChI=1S/C10H18O2/c1-2-3-4-5-6-7-8-9-10(11)12/h6-7H,2-5,8-9H2,1H3,(H,11,12)/b7-6-

InChI Key

XKZKQTCECFWKBN-SREVYHEPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Anas platyrhynchos	FooDB	FooDB
Anatidae	FooDB	FooDB
Anser anser	FooDB	FooDB
Bison bison	FooDB	FooDB
Bos taurus	FooDB	FooDB
Bos taurus X Bison bison	FooDB	FooDB
Bubalus bubalis	FooDB	FooDB
Capra aegagrus hircus	FooDB	FooDB
Cervidae	FooDB	FooDB
Cervus canadensis	FooDB	FooDB
Columba	FooDB	FooDB
Columbidae	FooDB	FooDB
Dromaius novaehollandiae	FooDB	FooDB
Equus caballus	FooDB	FooDB
Gallus gallus	FooDB	FooDB
Lagopus muta	FooDB	FooDB
Leporidae	FooDB	FooDB
Lepus timidus	FooDB	FooDB
Lindera umbellata	LOTUS Database	35616633
Melanitta fusca	FooDB	FooDB
Meleagris gallopavo	FooDB	FooDB
Numida meleagris	FooDB	FooDB
Odocoileus	FooDB	FooDB
Oryctolagus	FooDB	FooDB
Ovis aries	FooDB	FooDB
Phasianidae	FooDB	FooDB
Phasianus colchicus	FooDB	FooDB
Plumeria obtusa	LOTUS Database	35616633
Struthio camelus	FooDB	FooDB
Sus scrofa	FooDB	FooDB
Sus scrofa domestica	FooDB	FooDB

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Medium-chain fatty acids

Alternative Parents

Substituents

Medium-chain fatty acid
Unsaturated fatty acid
Straight chain fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

decenoic acid (CHEBI:32380 )
Unsaturated fatty acids (LMFA01030199 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.74	ALOGPS
logP	3.23	ChemAxon
logS	-3	ALOGPS
pKa (Strongest Acidic)	4.88	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	50.59 m³·mol⁻¹	ChemAxon
Polarizability	20.34 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0004980

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB002991

KNApSAcK ID

Not Available

Chemspider ID

4471776

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

7233

PubChem Compound

5312351

PDB ID

Not Available

ChEBI ID

32380

Good Scents ID

Not Available

References

General References

Onkenhout W, Venizelos V, Scholte HR, De Klerk JB, Poorthuis BJ: Intermediates of unsaturated fatty acid oxidation are incorporated in triglycerides but not in phospholipids in tissues from patients with mitochondrial beta-oxidation defects. J Inherit Metab Dis. 2001 Jun;24(3):337-44. doi: 10.1023/a:1010592232317. [PubMed:11486898 ]

Showing NP-Card for 4-Decenoic acid (NP0086507)

MOL for NP0086507 (4-Decenoic acid)

3D MOL for NP0086507 (4-Decenoic acid)

3D SDF for NP0086507 (4-Decenoic acid)

3D-SDF for NP0086507 (4-Decenoic acid)

PDB for NP0086507 (4-Decenoic acid)

3D PDB for NP0086507 (4-Decenoic acid)

SMILES for NP0086507 (4-Decenoic acid)

INCHI for NP0086507 (4-Decenoic acid)

Structure for NP0086507 (4-Decenoic acid)

3D Structure for NP0086507 (4-Decenoic acid)