NP-MRD: Showing NP-Card for 1-Methoxy-3,3'-methylenediindole (NP0086251)

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Record Information

Version

2.0

Created at

2022-04-29 06:35:25 UTC

Updated at

2022-04-29 06:35:26 UTC

NP-MRD ID

NP0086251

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1-Methoxy-3,3'-methylenediindole

Description

1-Methoxy-3,3'-methylenediindole is found in Brassica napus ssp. Oleifera and Plasmodiophora brassicae. Based on a literature review very few articles have been published on 3-[(1H-indol-3-yl)methyl]-1-methoxy-1H-isoindole.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 37 40  0  0  0  0  0  0  0  0999 V2000
   -3.4395    2.8165    1.6988 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4759    1.7600    0.8464 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7356    0.6134    1.3114 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2847    1.0164    0.9613 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9867    0.4381   -0.0922 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3314    0.5527   -0.8694 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4809    0.0484   -0.0790 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3581   -0.9739    0.8844 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5786   -1.2859    1.2630 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5102   -0.5247    0.6037 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8945   -0.5448    0.6890 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6235    0.3466   -0.1472 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9047    1.1738   -0.9860 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5367    1.1855   -1.0554 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7948    0.3147   -0.2434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9990   -0.5736   -0.5190 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9372   -1.5217   -1.5070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9245   -2.4995   -1.5097 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9303   -2.4921   -0.5274 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9360   -1.5250    0.4223 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9866   -0.5361    0.4653 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3388    3.2455    1.7197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6901    2.6458    2.7821 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0809    3.6505    1.3250 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6308    0.6211    2.3733 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4923    1.7430   -0.7700 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3228    0.3303   -1.8987 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4509   -1.3944    1.2585 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8823   -2.0040    1.9672 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4695   -1.1837    1.2936 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6811    0.3457   -0.0978 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4309    1.9133   -1.6012 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0036    1.8423   -1.6936 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1934   -1.5108   -2.2438 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8393   -3.2361   -2.2883 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6455   -3.2878   -0.5658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6919   -1.5096    1.2410 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
  5 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21  3  1  0
 15  7  1  0
 21 16  1  0
 15 10  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  3 25  1  1
  6 26  1  0
  6 27  1  0
  8 28  1  0
  9 29  1  0
 11 30  1  0
 12 31  1  0
 13 32  1  0
 14 33  1  0
 17 34  1  0
 18 35  1  0
 19 36  1  0
 20 37  1  0
M  END


  Mrv1652304292208352D          

 21 24  0  0  0  0            999 V2000
    3.9509   -3.5803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3988   -2.9672    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6538   -2.1826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1688   -1.5151    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.6538   -0.8477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3988   -0.0631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5919    0.1085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9788   -0.4436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2643   -0.0311    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4358    0.7759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9509    1.4433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2864    2.1970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1069    2.2832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5919    1.6158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2563    0.8621    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4384   -1.1026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1529   -0.6901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8673   -1.1026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8673   -1.9276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1529   -2.3401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4384   -1.9276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 10 15  1  0  0  0  0
  7 15  1  0  0  0  0
  5 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
  3 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0086251

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1N=C(CC2=CNC3=CC=CC=C23)C2=CC=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C18H16N2O/c1-21-18-15-8-3-2-7-14(15)17(20-18)10-12-11-19-16-9-5-4-6-13(12)16/h2-9,11,18-19H,10H2,1H3

> <INCHI_KEY>
SKCJUDPXZCOBGQ-UHFFFAOYSA-N

> <FORMULA>
C18H16N2O

> <MOLECULAR_WEIGHT>
276.339

> <EXACT_MASS>
276.126263143

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
37

> <JCHEM_AVERAGE_POLARIZABILITY>
30.64464840034407

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-[(1H-indol-3-yl)methyl]-1-methoxy-1H-isoindole

> <ALOGPS_LOGP>
3.59

> <JCHEM_LOGP>
3.7304625896666663

> <ALOGPS_LOGS>
-5.03

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.106649028259515

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.117649434160068

> <JCHEM_PKA_STRONGEST_BASIC>
1.2132273626085814

> <JCHEM_POLAR_SURFACE_AREA>
37.379999999999995

> <JCHEM_REFRACTIVITY>
83.55870000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.60e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-(1H-indol-3-ylmethyl)-3-methoxy-3H-isoindole

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       7.375  -6.683   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       6.344  -5.539   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       6.820  -4.074   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0       5.915  -2.828   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       6.820  -1.582   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.344  -0.118   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.838   0.202   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.694  -0.828   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0       2.360  -0.058   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       2.680   1.448   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.775   2.694   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.401   4.101   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.933   4.262   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.838   3.016   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.212   1.609   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.285  -2.058   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.619  -1.288   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.952  -2.058   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      10.952  -3.598   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.619  -4.368   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.285  -3.598   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   21                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   16                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   15                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   10    7                                                  
CONECT   16    5   17   21                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   16    3                                                  
MASTER        0    0    0    0    0    0    0    0   21    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₁₆N₂O

Average Mass

276.3390 Da

Monoisotopic Mass

276.12626 Da

IUPAC Name

3-[(1H-indol-3-yl)methyl]-1-methoxy-1H-isoindole

Traditional Name

1-(1H-indol-3-ylmethyl)-3-methoxy-3H-isoindole

CAS Registry Number

Not Available

SMILES

COC1N=C(CC2=CNC3=CC=CC=C23)C2=CC=CC=C12

InChI Identifier

InChI=1S/C18H16N2O/c1-21-18-15-8-3-2-7-14(15)17(20-18)10-12-11-19-16-9-5-4-6-13(12)16/h2-9,11,18-19H,10H2,1H3

InChI Key

SKCJUDPXZCOBGQ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Brassica napus ssp. Oleifera	Plant	KNApSAcK
Plasmodiophora brassicae	-	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.59	ALOGPS
logP	3.73	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	10.12	ChemAxon
pKa (Strongest Basic)	1.21	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.38 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	83.56 m³·mol⁻¹	ChemAxon
Polarizability	30.64 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00056420

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163183942

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 1-Methoxy-3,3'-methylenediindole (NP0086251)

MOL for NP0086251 (1-Methoxy-3,3'-methylenediindole)

3D MOL for NP0086251 (1-Methoxy-3,3'-methylenediindole)

3D SDF for NP0086251 (1-Methoxy-3,3'-methylenediindole)

3D-SDF for NP0086251 (1-Methoxy-3,3'-methylenediindole)

PDB for NP0086251 (1-Methoxy-3,3'-methylenediindole)

3D PDB for NP0086251 (1-Methoxy-3,3'-methylenediindole)

SMILES for NP0086251 (1-Methoxy-3,3'-methylenediindole)

INCHI for NP0086251 (1-Methoxy-3,3'-methylenediindole)

Structure for NP0086251 (1-Methoxy-3,3'-methylenediindole)

3D Structure for NP0086251 (1-Methoxy-3,3'-methylenediindole)