NP-MRD: Showing NP-Card for Paucinone H (NP0085979)

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Record Information

Version

2.0

Created at

2022-04-29 06:23:16 UTC

Updated at

2022-04-29 06:23:17 UTC

NP-MRD ID

NP0085979

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Paucinone H

Description

8-(3,4-Dihydroxybenzoyl)-10-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-5,5-dimethyl-10-(3-methylbut-2-en-1-yl)-2,6-dioxatricyclo[5.4.0.0¹,³]Undec-7-ene-9,11-dione belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring. Paucinone H is found in Garcinia paucinervis. Based on a literature review very few articles have been published on 8-(3,4-dihydroxybenzoyl)-10-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-5,5-dimethyl-10-(3-methylbut-2-en-1-yl)-2,6-dioxatricyclo[5.4.0.0¹,³]Undec-7-ene-9,11-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292208232D          

 40 43  0  0  0  0            999 V2000
    4.2868    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  7 38  2  0  0  0  0
  6 39  1  0  0  0  0
 39 40  2  0  0  0  0
  2 40  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652304292208232D          

 40 43  0  0  0  0            999 V2000
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    0.5649   -5.5217    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1277   -6.2214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5150   -6.9498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6968   -6.1926    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1100   -1.2663    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5472   -0.5667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3717   -0.5954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7590   -1.3239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8089    0.1042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  8 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 11 19  1  0  0  0  0
 17 19  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
  9 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 21 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
 20 37  2  0  0  0  0
  7 38  2  0  0  0  0
  6 39  1  0  0  0  0
 39 40  2  0  0  0  0
  2 40  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0085979

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC\C(C)=C\CC1(CC=C(C)C)C(=O)C(C(=O)C2=CC(O)=C(O)C=C2)=C2OC(C)(C)CC3OC23C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C33H40O7/c1-19(2)9-8-10-21(5)14-16-32(15-13-20(3)4)28(37)26(27(36)22-11-12-23(34)24(35)17-22)29-33(30(32)38)25(39-33)18-31(6,7)40-29/h9,11-14,17,25,34-35H,8,10,15-16,18H2,1-7H3/b21-14+

> <INCHI_KEY>
KEQANZVCLOIYPL-KGENOOAVSA-N

> <FORMULA>
C33H40O7

> <MOLECULAR_WEIGHT>
548.676

> <EXACT_MASS>
548.277403628

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
80

> <JCHEM_AVERAGE_POLARIZABILITY>
60.19810734950539

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
8-(3,4-dihydroxybenzoyl)-10-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-5,5-dimethyl-10-(3-methylbut-2-en-1-yl)-2,6-dioxatricyclo[5.4.0.0^{1,3}]undec-7-ene-9,11-dione

> <ALOGPS_LOGP>
5.24

> <JCHEM_LOGP>
6.661827042333334

> <ALOGPS_LOGS>
-5.51

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.793713944462299

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.4662218504285764

> <JCHEM_PKA_STRONGEST_BASIC>
-4.237223896619254

> <JCHEM_POLAR_SURFACE_AREA>
113.43

> <JCHEM_REFRACTIVITY>
157.5206

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.69e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
8-(3,4-dihydroxybenzoyl)-10-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-5,5-dimethyl-10-(3-methylbut-2-en-1-yl)-2,6-dioxatricyclo[5.4.0.0^{1,3}]undec-7-ene-9,11-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  O   UNK     0       8.002   4.620   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       8.002   1.540   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.000  -0.000   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       5.335   0.000   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.195   0.677   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.185  -1.037   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.001  -3.850   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.518  -3.616   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.241  -4.976   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.425  -6.282   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.115  -6.228   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.148  -7.641   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.331  -8.947   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.054 -10.307   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.238 -11.613   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.961 -12.973   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -1.301 -11.559   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -0.205  -2.364   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -1.021  -1.058   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -2.561  -1.111   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -3.284  -2.471   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -3.377   0.194   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   38  O   UNK     0       1.334   2.310   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   40                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   39                                                  
CONECT    7    6    8   38                                                  
CONECT    8    7    9   11                                                  
CONECT    9    8   10   21                                                  
CONECT   10    9                                                            
CONECT   11    8   12   19                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17   19                                                       
CONECT   19   11   17   18   20                                             
CONECT   20   19   21   37                                                  
CONECT   21   20    9   22   32                                             
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29                                                            
CONECT   32   21   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34                                                            
CONECT   37   20                                                            
CONECT   38    7                                                            
CONECT   39    6   40                                                       
CONECT   40   39    2                                                       
MASTER        0    0    0    0    0    0    0    0   40    0   86    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₄₀O₇

Average Mass

548.6760 Da

Monoisotopic Mass

548.27740 Da

IUPAC Name

8-(3,4-dihydroxybenzoyl)-10-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-5,5-dimethyl-10-(3-methylbut-2-en-1-yl)-2,6-dioxatricyclo[5.4.0.0^{1,3}]undec-7-ene-9,11-dione

Traditional Name

8-(3,4-dihydroxybenzoyl)-10-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-5,5-dimethyl-10-(3-methylbut-2-en-1-yl)-2,6-dioxatricyclo[5.4.0.0^{1,3}]undec-7-ene-9,11-dione

CAS Registry Number

Not Available

SMILES

CC(C)=CCC\C(C)=C\CC1(CC=C(C)C)C(=O)C(C(=O)C2=CC(O)=C(O)C=C2)=C2OC(C)(C)CC3OC23C1=O

InChI Identifier

InChI=1S/C33H40O7/c1-19(2)9-8-10-21(5)14-16-32(15-13-20(3)4)28(37)26(27(36)22-11-12-23(34)24(35)17-22)29-33(30(32)38)25(39-33)18-31(6,7)40-29/h9,11-14,17,25,34-35H,8,10,15-16,18H2,1-7H3/b21-14+

InChI Key

KEQANZVCLOIYPL-KGENOOAVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Garcinia paucinervis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Aromatic monoterpenoids

Alternative Parents

Substituents

Aromatic monoterpenoid
Aryl ketone
Catechol
Benzoyl
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Cyclohexenone
Phenol
Dioxepane
1,4-dioxepane
Benzenoid
Oxane
Monocyclic benzene moiety
Vinylogous ester
Cyclic ketone
Ketone
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.24	ALOGPS
logP	6.66	ChemAxon
logS	-5.5	ALOGPS
pKa (Strongest Acidic)	7.47	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	113.43 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	157.52 m³·mol⁻¹	ChemAxon
Polarizability	60.2 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00056065

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162657575

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Paucinone H (NP0085979)

MOL for NP0085979 (Paucinone H)

3D MOL for NP0085979 (Paucinone H)

3D SDF for NP0085979 (Paucinone H)

3D-SDF for NP0085979 (Paucinone H)

PDB for NP0085979 (Paucinone H)

3D PDB for NP0085979 (Paucinone H)

SMILES for NP0085979 (Paucinone H)

INCHI for NP0085979 (Paucinone H)

Structure for NP0085979 (Paucinone H)

3D Structure for NP0085979 (Paucinone H)