NP-MRD: Showing NP-Card for Garcibiphenyl B (NP0085837)

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Record Information

Version

2.0

Created at

2022-04-29 06:17:24 UTC

Updated at

2022-04-29 06:17:24 UTC

NP-MRD ID

NP0085837

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Garcibiphenyl B

Description

5-Methoxy-4-(3-methylbut-2-en-1-yl)-[1,1'-biphenyl]-3,4'-diol belongs to the class of organic compounds known as biphenyls and derivatives. These are organic compounds containing to benzene rings linked together by a C-C bond. Garcibiphenyl B is found in Garcinia linii. 5-Methoxy-4-(3-methylbut-2-en-1-yl)-[1,1'-biphenyl]-3,4'-diol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 41 42  0  0  0  0  0  0  0  0999 V2000
   -0.2631    3.6262   -0.8332 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6679    2.6608   -0.4197 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2404    1.3838   -0.1137 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1008    1.0944   -0.2250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5880   -0.1720    0.0694 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0245   -0.4718   -0.0523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4522   -1.7320   -0.3926 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8211   -1.9536   -0.4911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7249   -0.9392   -0.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0782   -1.2252   -0.3693 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2534    0.3115    0.0845 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9043    0.5454    0.1856 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6841   -1.1251    0.4754 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6679   -0.8319    0.5871 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5737   -1.8111    1.0004 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1555    0.4143    0.2987 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5622    0.8305    0.3813 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4952   -0.1918    0.8701 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5069   -0.6519    0.1656 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4107   -1.6831    0.7171 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7490   -0.1328   -1.1998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1062    3.7429   -0.0979 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7192    3.3481   -1.7895 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2302    4.6278   -0.9419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8378    1.8295   -0.5440 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7211   -2.5030   -0.5710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1246   -2.9556   -0.7605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7730   -0.5137   -0.2052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9954    1.1045    0.2685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5935    1.5564    0.4574 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0827   -2.1071    0.7007 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1996   -2.7227    1.2086 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5971    1.6897    1.1134 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8769    1.2332   -0.6109 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3430   -0.5855    1.8670 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7413   -2.4131   -0.0508 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9926   -2.1790    1.6195 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3408   -1.1633    1.0485 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5533   -0.7292   -1.7134 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1255    0.9141   -1.1760 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8184   -0.1193   -1.8076 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5 13  2  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  2  3
 19 20  1  0
 19 21  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
 16  3  1  0
 12  6  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  4 25  1  0
 13 31  1  0
 15 32  1  0
 17 33  1  0
 17 34  1  0
 18 35  1  0
 20 36  1  0
 20 37  1  0
 20 38  1  0
 21 39  1  0
 21 40  1  0
 21 41  1  0
  7 26  1  0
  8 27  1  0
 10 28  1  0
 11 29  1  0
 12 30  1  0
M  END


  Mrv1533004231521102D          

 21 22  0  0  0  0            999 V2000
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  3  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
  5 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  2  0  0  0  0
 15 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0085837

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(=CC(O)=C1CC=C(C)C)C1=CC=C(O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C18H20O3/c1-12(2)4-9-16-17(20)10-14(11-18(16)21-3)13-5-7-15(19)8-6-13/h4-8,10-11,19-20H,9H2,1-3H3

> <INCHI_KEY>
HOJRPRKZNLBIEQ-UHFFFAOYSA-N

> <FORMULA>
C18H20O3

> <MOLECULAR_WEIGHT>
284.355

> <EXACT_MASS>
284.141244504

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
32.053324113862935

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-(4-hydroxyphenyl)-3-methoxy-2-(3-methylbut-2-en-1-yl)phenol

> <ALOGPS_LOGP>
4.22

> <JCHEM_LOGP>
4.584236268333333

> <ALOGPS_LOGS>
-4.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.95325809721711

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.048639797483524

> <JCHEM_PKA_STRONGEST_BASIC>
-4.849770121593833

> <JCHEM_POLAR_SURFACE_AREA>
49.69

> <JCHEM_REFRACTIVITY>
85.86200000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.91e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-(4-hydroxyphenyl)-3-methoxy-2-(3-methylbut-2-en-1-yl)phenol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.334  -0.770   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.334  -5.390   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.002  -7.700   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    9                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   15                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7    3   10                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15    5   16   21                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   15                                                       
MASTER        0    0    0    0    0    0    0    0   21    0   44    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₂₀O₃

Average Mass

284.3550 Da

Monoisotopic Mass

284.14124 Da

IUPAC Name

5-(4-hydroxyphenyl)-3-methoxy-2-(3-methylbut-2-en-1-yl)phenol

Traditional Name

5-(4-hydroxyphenyl)-3-methoxy-2-(3-methylbut-2-en-1-yl)phenol

CAS Registry Number

Not Available

SMILES

COC1=CC(=CC(O)=C1CC=C(C)C)C1=CC=C(O)C=C1

InChI Identifier

InChI=1S/C18H20O3/c1-12(2)4-9-16-17(20)10-14(11-18(16)21-3)13-5-7-15(19)8-6-13/h4-8,10-11,19-20H,9H2,1-3H3

InChI Key

HOJRPRKZNLBIEQ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Garcinia linii	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as biphenyls and derivatives. These are organic compounds containing to benzene rings linked together by a C-C bond.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Biphenyls and derivatives

Direct Parent

Biphenyls and derivatives

Alternative Parents

Substituents

Biphenyl
Methoxyphenol
Phenoxy compound
Methoxybenzene
Phenol ether
Anisole
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Alkyl aryl ether
Ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.22	ALOGPS
logP	4.58	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	9.05	ChemAxon
pKa (Strongest Basic)	-4.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	49.69 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	85.86 m³·mol⁻¹	ChemAxon
Polarizability	32.05 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

86057835

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Garcibiphenyl B (NP0085837)

MOL for NP0085837 (Garcibiphenyl B)

3D MOL for NP0085837 (Garcibiphenyl B)

3D SDF for NP0085837 (Garcibiphenyl B)

3D-SDF for NP0085837 (Garcibiphenyl B)

PDB for NP0085837 (Garcibiphenyl B)

3D PDB for NP0085837 (Garcibiphenyl B)

SMILES for NP0085837 (Garcibiphenyl B)

INCHI for NP0085837 (Garcibiphenyl B)

Structure for NP0085837 (Garcibiphenyl B)

3D Structure for NP0085837 (Garcibiphenyl B)