NP-MRD: Showing NP-Card for Alpinoid B (NP0085448)

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Record Information

Version

2.0

Created at

2022-04-29 05:58:22 UTC

Updated at

2022-04-29 05:58:23 UTC

NP-MRD ID

NP0085448

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Alpinoid B

Description

Alpinoid C, also known as alpinoid-C, belongs to the class of organic compounds known as linear diarylheptanoids. These are diarylheptanoids with an open heptane chain. The two aromatic rings are linked only by the heptane chain. Alpinoid B is found in Alpinia officinarum . Alpinoid B was first documented in 2012 (PMID: 22578452). Based on a literature review a small amount of articles have been published on Alpinoid C (PMID: 31071337).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 41 42  0  0  0  0  0  0  0  0999 V2000
   -1.7346   -3.3393   -0.8815 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3282   -2.1377   -0.7104 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0521   -1.9495   -0.3306 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5613   -0.7519   -0.1310 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9731   -0.5222    0.2594 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9796    0.2855    1.3892 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7622    0.1668   -0.8187 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1623    0.3904   -0.3774 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1155   -0.5987   -0.6393 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4296   -0.4732   -0.2660 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8194    0.6559    0.3830 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8849    1.6461    0.6498 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5716    1.5310    0.2818 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3135   -1.0430   -0.9182 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2734   -1.1006    0.2532 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3152   -0.0720    0.1914 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1126    1.1557    0.7701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1198    2.1124    0.6953 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2925    1.7976    0.0411 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4915    0.5497   -0.5440 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4949   -0.3896   -0.4671 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6687   -2.8213   -0.2112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0418    0.1346   -0.2452 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4277   -1.4907    0.4889 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6338    1.1963    1.2028 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2582    1.1444   -1.0732 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8047   -0.3969   -1.7615 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7702   -1.4870   -1.1590 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1282   -1.2560   -0.4863 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8707    0.7623    0.6844 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2404    2.5222    1.1659 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8373    2.3027    0.4882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9179   -1.2572   -1.8464 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8625   -0.0679   -1.0867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6986   -2.1346    0.2626 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6414   -1.0116    1.1786 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1857    1.3910    1.2817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9688    3.0906    1.1519 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1042    2.5075   -0.0432 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4076    0.3072   -1.0536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6469   -1.3487   -0.9165 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0
  5  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
  5  4  1  0
  4  3  2  0
  3  2  1  0
  2  1  2  0
  2 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 13  8  1  0
 21 16  1  0
  6 25  1  0
  5 24  1  1
  7 26  1  0
  7 27  1  0
  9 28  1  0
 10 29  1  0
 11 30  1  0
 12 31  1  0
 13 32  1  0
  4 23  1  0
  3 22  1  0
 14 33  1  0
 14 34  1  0
 15 35  1  0
 15 36  1  0
 17 37  1  0
 18 38  1  0
 19 39  1  0
 20 40  1  0
 21 41  1  0
M  END


  Mrv1652304292207582D          

 21 22  0  0  1  0            999 V2000
   -1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5724   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4302   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4302   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  5 10  1  0  0  0  0
  2 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0085448

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O[C@H](CC1=CC=CC=C1)\C=C\C(=O)CCC1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C19H20O2/c20-18(12-11-16-7-3-1-4-8-16)13-14-19(21)15-17-9-5-2-6-10-17/h1-10,13-14,19,21H,11-12,15H2/b14-13+/t19-/m0/s1

> <INCHI_KEY>
TYZZLIGGENRWEF-KQDNUWKFSA-N

> <FORMULA>
C19H20O2

> <MOLECULAR_WEIGHT>
280.367

> <EXACT_MASS>
280.146329884

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
32.040601852519195

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4E,6R)-6-hydroxy-1,7-diphenylhept-4-en-3-one

> <ALOGPS_LOGP>
3.58

> <JCHEM_LOGP>
4.320246530333334

> <ALOGPS_LOGS>
-4.63

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.746278111257098

> <JCHEM_PKA_STRONGEST_BASIC>
-2.909777954136146

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
86.65140000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.59e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4E,6R)-6-hydroxy-1,7-diphenylhept-4-en-3-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  O   UNK     0      -2.667  -4.620   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.667  -9.240   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334 -10.010   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334 -11.550   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.667 -12.320   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.001 -11.550   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.001 -10.010   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -6.668  -0.770   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -8.002  -3.080   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -9.336  -2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0     -10.669  -3.080   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0     -12.003  -2.310   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -12.003  -0.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -10.669   0.000   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -9.336  -0.770   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   11                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   10                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9    5                                                       
CONECT   11    2   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17   21                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   16                                                       
MASTER        0    0    0    0    0    0    0    0   21    0   44    0
END

View in JSmol

Synonyms

Value	Source
Alpinoid-C	MeSH

Chemical Formula

C₁₉H₂₀O₂

Average Mass

280.3670 Da

Monoisotopic Mass

280.14633 Da

IUPAC Name

(4E,6R)-6-hydroxy-1,7-diphenylhept-4-en-3-one

Traditional Name

(4E,6R)-6-hydroxy-1,7-diphenylhept-4-en-3-one

CAS Registry Number

Not Available

SMILES

O[C@H](CC1=CC=CC=C1)\C=C\C(=O)CCC1=CC=CC=C1

InChI Identifier

InChI=1S/C19H20O2/c20-18(12-11-16-7-3-1-4-8-16)13-14-19(21)15-17-9-5-2-6-10-17/h1-10,13-14,19,21H,11-12,15H2/b14-13+/t19-/m0/s1

InChI Key

TYZZLIGGENRWEF-KQDNUWKFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Alpinia officinarum	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as linear diarylheptanoids. These are diarylheptanoids with an open heptane chain. The two aromatic rings are linked only by the heptane chain.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Diarylheptanoids

Sub Class

Linear diarylheptanoids

Direct Parent

Linear diarylheptanoids

Alternative Parents

Substituents

Linear 1,7-diphenylheptane skeleton
Fatty alcohol
Monocyclic benzene moiety
Fatty acyl
Benzenoid
Acryloyl-group
Enone
Alpha,beta-unsaturated ketone
Ketone
Secondary alcohol
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organic oxygen compound
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.58	ALOGPS
logP	4.32	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Acidic)	14.75	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	86.65 m³·mol⁻¹	ChemAxon
Polarizability	32.04 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00055317

Chemspider ID

28528116

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

46935166

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Velatooru LR, Vakamullu S, Penugurti V, S PR: Alpinoid c analog inhibits angiogenesis and induces apoptosis in COLO205cell line. Chem Biol Interact. 2019 Aug 1;308:1-10. doi: 10.1016/j.cbi.2019.05.009. Epub 2019 May 6. [PubMed:31071337 ]
Purushotham Reddy S, Chinnababu B, Shekhar V, Kumar Reddy D, Bhanuprakash GV, Velatoor LR, Venkateswara Rao J, Venkateswarlu Y: Stereoselective synthesis of alpinoid-C and its analogues and study of their cytotoxic activity against cancer cell lines. Bioorg Med Chem Lett. 2012 Jun 15;22(12):4182-4. doi: 10.1016/j.bmcl.2012.04.021. Epub 2012 Apr 21. [PubMed:22578452 ]

Showing NP-Card for Alpinoid B (NP0085448)

MOL for NP0085448 (Alpinoid B)

3D MOL for NP0085448 (Alpinoid B)

3D SDF for NP0085448 (Alpinoid B)

3D-SDF for NP0085448 (Alpinoid B)

PDB for NP0085448 (Alpinoid B)

3D PDB for NP0085448 (Alpinoid B)

SMILES for NP0085448 (Alpinoid B)

INCHI for NP0085448 (Alpinoid B)

Structure for NP0085448 (Alpinoid B)

3D Structure for NP0085448 (Alpinoid B)