NP-MRD: Showing NP-Card for Dihydroisomorellin (NP0085330)

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Record Information

Version

2.0

Created at

2022-04-29 05:53:37 UTC

Updated at

2022-04-29 05:53:37 UTC

NP-MRD ID

NP0085330

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Dihydroisomorellin

Description

Dihydroisomorellin is found in Garcinia morella .

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292207532D          

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M  END

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  Mrv1652304292207532D          

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    5.6456   -0.0069    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9804    0.8190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5274   -0.1302    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7134   -0.8291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0353   -1.2989    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3025   -2.4243    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  3 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  1  0  0  0
 16  2  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
  3 19  1  0  0  0  0
 14 19  1  0  0  0  0
 19 20  1  6  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 20 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 22 30  2  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  2  0  0  0  0
 24 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 35 37  1  0  0  0  0
 35 38  1  0  0  0  0
 38 39  2  0  0  0  0
 32 39  1  0  0  0  0
 21 40  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0085330

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC1=C2O[C@@]34[C@H]5C[C@@H](CC3C(=O)C2=C(O)C2=C1OC(C)(C)C=C2)C(=O)[C@]4(C\C=C(/C)C=O)OC5(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C33H38O7/c1-17(2)8-9-21-27-20(11-12-30(4,5)38-27)25(35)24-26(36)22-14-19-15-23-31(6,7)40-32(29(19)37,13-10-18(3)16-34)33(22,23)39-28(21)24/h8,10-12,16,19,22-23,35H,9,13-15H2,1-7H3/b18-10+/t19-,22?,23+,32+,33+/m1/s1

> <INCHI_KEY>
ORNMPVMTDJIPQS-RQQCLBSWSA-N

> <FORMULA>
C33H38O7

> <MOLECULAR_WEIGHT>
546.66

> <EXACT_MASS>
546.261753564

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
78

> <JCHEM_AVERAGE_POLARIZABILITY>
59.295678024213316

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E)-4-[(1S,2S,17S,19R)-12-hydroxy-8,8,21,21-tetramethyl-5-(3-methylbut-2-en-1-yl)-14,18-dioxo-3,7,20-trioxahexacyclo[15.4.1.0^{2,15}.0^{2,19}.0^{4,13}.0^{6,11}]docosa-4,6(11),9,12-tetraen-19-yl]-2-methylbut-2-enal

> <ALOGPS_LOGP>
5.01

> <JCHEM_LOGP>
6.037085190666668

> <ALOGPS_LOGS>
-5.49

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.631222722197577

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.542613961423275

> <JCHEM_PKA_STRONGEST_BASIC>
-3.9628958696251417

> <JCHEM_POLAR_SURFACE_AREA>
99.13000000000002

> <JCHEM_REFRACTIVITY>
153.63469999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.76e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2E)-4-[(1S,2S,17S,19R)-12-hydroxy-8,8,21,21-tetramethyl-5-(3-methylbut-2-en-1-yl)-14,18-dioxo-3,7,20-trioxahexacyclo[15.4.1.0^{2,15}.0^{2,19}.0^{4,13}.0^{6,11}]docosa-4,6(11),9,12-tetraen-19-yl]-2-methylbut-2-enal

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  O   UNK     0       0.414  -4.110   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       0.465  -2.250   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.378  -0.481   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.341   0.517   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.742   2.209   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.217   2.651   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.338   1.595   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.572   4.150   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.452   5.206   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       2.534   0.933   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       1.327   1.819   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.960   3.370   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.233   3.087   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.631   0.439   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.821  -0.360   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.567  -1.977   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.932  -3.170   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.548  -2.381   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.374  -0.710   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       3.793   0.099   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.069  -2.883   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.348  -1.986   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.222  -0.452   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.488   0.426   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.576   2.119   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.395   3.515   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.634   4.853   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.094   4.864   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.412   6.182   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.741  -2.644   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       6.901  -4.228   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       8.007  -1.767   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       7.880  -0.232   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       9.146   0.645   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      10.538  -0.013   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      11.163   1.529   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      12.184  -0.243   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      10.665  -1.548   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       9.399  -2.425   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0       4.298  -4.525   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   16                                                  
CONECT    3    2    4   10   19                                             
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8                                                            
CONECT   10    3   11                                                       
CONECT   11   10   12   13   14                                             
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14   11   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16    2   15   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   21                                                  
CONECT   19   18    3   14   20                                             
CONECT   20   19   23                                                       
CONECT   21   18   22   40                                                  
CONECT   22   21   23   30                                                  
CONECT   23   22   20   24                                                  
CONECT   24   23   25   33                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   22   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   39                                                  
CONECT   33   32   24   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36   37   38                                             
CONECT   36   35                                                            
CONECT   37   35                                                            
CONECT   38   35   39                                                       
CONECT   39   38   32                                                       
CONECT   40   21                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   90    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₃₈O₇

Average Mass

546.6600 Da

Monoisotopic Mass

546.26175 Da

IUPAC Name

(2E)-4-[(1S,2S,17S,19R)-12-hydroxy-8,8,21,21-tetramethyl-5-(3-methylbut-2-en-1-yl)-14,18-dioxo-3,7,20-trioxahexacyclo[15.4.1.0^{2,15}.0^{2,19}.0^{4,13}.0^{6,11}]docosa-4,6(11),9,12-tetraen-19-yl]-2-methylbut-2-enal

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(C)=CCC1=C2O[C@@]34[C@H]5C[C@@H](CC3C(=O)C2=C(O)C2=C1OC(C)(C)C=C2)C(=O)[C@]4(C\C=C(/C)C=O)OC5(C)C

InChI Identifier

InChI=1S/C33H38O7/c1-17(2)8-9-21-27-20(11-12-30(4,5)38-27)25(35)24-26(36)22-14-19-15-23-31(6,7)40-32(29(19)37,13-10-18(3)16-34)33(22,23)39-28(21)24/h8,10-12,16,19,22-23,35H,9,13-15H2,1-7H3/b18-10+/t19-,22?,23+,32+,33+/m1/s1

InChI Key

ORNMPVMTDJIPQS-RQQCLBSWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Garcinia morella	Plant	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.01	ALOGPS
logP	6.04	ChemAxon
logS	-5.5	ALOGPS
pKa (Strongest Acidic)	8.54	ChemAxon
pKa (Strongest Basic)	-4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	99.13 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	153.63 m³·mol⁻¹	ChemAxon
Polarizability	59.3 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Not Available

Showing NP-Card for Dihydroisomorellin (NP0085330)

MOL for NP0085330 (Dihydroisomorellin)

3D MOL for NP0085330 (Dihydroisomorellin)

3D SDF for NP0085330 (Dihydroisomorellin)

3D-SDF for NP0085330 (Dihydroisomorellin)

PDB for NP0085330 (Dihydroisomorellin)

3D PDB for NP0085330 (Dihydroisomorellin)

SMILES for NP0085330 (Dihydroisomorellin)

INCHI for NP0085330 (Dihydroisomorellin)

Structure for NP0085330 (Dihydroisomorellin)

3D Structure for NP0085330 (Dihydroisomorellin)