NP-MRD: Showing NP-Card for Coumaperine (NP0085227)

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Record Information

Version

2.0

Created at

2022-04-29 05:48:29 UTC

Updated at

2022-04-29 05:48:29 UTC

NP-MRD ID

NP0085227

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Coumaperine

Description

Coumaperine belongs to the class of organic compounds known as n-acylpiperidines. N-acylpiperidines are compounds containing an N-acyethanolamine moiety, which is characterized by an acyl group is linked to the nitrogen atom of a piperidine. Coumaperine is found in Piper nigrum and Piper nigrum . Coumaperine was first documented in 2009 (PMID: 20209953). Based on a literature review a small amount of articles have been published on Coumaperine (PMID: 34988845) (PMID: 33921056) (PMID: 30638966) (PMID: 27810594).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 39  0  0  0  0  0  0  0  0999 V2000
   -2.0421   -2.2379   -0.5346 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0273   -1.0121   -0.2217 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7417   -0.3779   -0.0364 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3699   -1.0391   -0.1850 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6950   -0.4437   -0.0088 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7931   -1.1263   -0.1632 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0917   -0.5343    0.0116 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2175   -1.3430   -0.1744 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4997   -0.8707   -0.0305 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6607    0.4602    0.3123 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9403    0.9746    0.4669 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5475    1.2510    0.4940 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2457    0.7789    0.3498 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2707   -0.3182   -0.0673 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1761    1.0747    0.2880 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4952    1.8099    0.1963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5661    0.8842    0.7463 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7234   -0.2037   -0.3238 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4905   -1.0417   -0.2718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6455    0.6851    0.2372 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3239   -2.0951   -0.4554 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7221    0.5924    0.2562 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7109   -2.1823   -0.4343 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1128   -2.3969   -0.4454 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3725   -1.4910   -0.1730 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4237    0.9640    1.3534 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6770    2.3071    0.7660 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4322    1.4689    0.5112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3816    1.5972   -0.3061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8527    1.1631    1.3650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6899    1.9589   -0.8969 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4880    2.7704    0.7037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4987    1.4478    0.8836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2079    0.3928    1.6861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7827    0.3493   -1.3013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6426   -0.7540   -0.1348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4658   -1.6557   -1.2161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6478   -1.8066    0.5398 H   0  0  0  0  0  0  0  0  0  0  0  0
 11 10  1  0
 10  9  2  0
  9  8  1  0
  8  7  2  0
  7  6  1  0
  6  5  2  0
  5  4  1  0
  4  3  2  0
  3  2  1  0
  2  1  2  0
  2 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
  7 13  1  0
 13 12  2  0
 12 10  1  0
 19 14  1  0
 11 26  1  0
  9 25  1  0
  8 24  1  0
  6 23  1  0
  5 22  1  0
  4 21  1  0
  3 20  1  0
 15 29  1  0
 15 30  1  0
 16 31  1  0
 16 32  1  0
 17 33  1  0
 17 34  1  0
 18 35  1  0
 18 36  1  0
 19 37  1  0
 19 38  1  0
 13 28  1  0
 12 27  1  0
M  END


  Mrv1652304292207482D          

 19 20  0  0  0  0            999 V2000
    3.5724   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -9.0750    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -9.0750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -9.0750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 11 16  1  0  0  0  0
 10 17  2  0  0  0  0
  5 18  1  0  0  0  0
 18 19  2  0  0  0  0
  2 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0085227

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=CC=C(\C=C\C=C\C(=O)N2CCCCC2)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C16H19NO2/c18-15-10-8-14(9-11-15)6-2-3-7-16(19)17-12-4-1-5-13-17/h2-3,6-11,18H,1,4-5,12-13H2/b6-2+,7-3+

> <INCHI_KEY>
QDAARMDLSCDBFU-YPCIICBESA-N

> <FORMULA>
C16H19NO2

> <MOLECULAR_WEIGHT>
257.333

> <EXACT_MASS>
257.141578856

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
29.93316693758324

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E,4E)-5-(4-hydroxyphenyl)-1-(piperidin-1-yl)penta-2,4-dien-1-one

> <ALOGPS_LOGP>
3.52

> <JCHEM_LOGP>
2.850512261

> <ALOGPS_LOGS>
-3.04

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.50661167605502

> <JCHEM_PKA_STRONGEST_BASIC>
-0.13201226594967375

> <JCHEM_POLAR_SURFACE_AREA>
40.54

> <JCHEM_REFRACTIVITY>
79.117

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.36e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2E,4E)-5-(4-hydroxyphenyl)-1-(piperidin-1-yl)penta-2,4-dien-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  O   UNK     0       6.668  -5.390   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.002  -9.240   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.668 -10.010   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.668 -11.550   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.335 -12.320   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.335 -13.860   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.001 -14.630   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.001 -16.170   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       2.667 -16.940   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0       2.667 -18.480   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.334 -19.250   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000 -18.480   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.000 -16.940   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.334 -16.170   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       5.335 -16.940   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   19                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   18                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   17                                                  
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11                                                       
CONECT   17   10                                                            
CONECT   18    5   19                                                       
CONECT   19   18    2                                                       
MASTER        0    0    0    0    0    0    0    0   19    0   40    0
END

View in JSmol

Synonyms

Value	Source
N-5-(4-Hydroxyphenyl)-2E,4E-pentadienoylpiperidine	MeSH

Chemical Formula

C₁₆H₁₉NO₂

Average Mass

257.3330 Da

Monoisotopic Mass

257.14158 Da

IUPAC Name

(2E,4E)-5-(4-hydroxyphenyl)-1-(piperidin-1-yl)penta-2,4-dien-1-one

Traditional Name

(2E,4E)-5-(4-hydroxyphenyl)-1-(piperidin-1-yl)penta-2,4-dien-1-one

CAS Registry Number

Not Available

SMILES

OC1=CC=C(\C=C\C=C\C(=O)N2CCCCC2)C=C1

InChI Identifier

InChI=1S/C16H19NO2/c18-15-10-8-14(9-11-15)6-2-3-7-16(19)17-12-4-1-5-13-17/h2-3,6-11,18H,1,4-5,12-13H2/b6-2+,7-3+

InChI Key

QDAARMDLSCDBFU-YPCIICBESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Piper nigrum	LOTUS Database	35616633
Piper nigrum L.	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acylpiperidines. N-acylpiperidines are compounds containing an N-acyethanolamine moiety, which is characterized by an acyl group is linked to the nitrogen atom of a piperidine.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Piperidines

Sub Class

N-acylpiperidines

Direct Parent

N-acylpiperidines

Alternative Parents

Substituents

N-acyl-piperidine
Styrene
1-hydroxy-2-unsubstituted benzenoid
Phenol
Monocyclic benzene moiety
Benzenoid
Tertiary carboxylic acid amide
Carboxamide group
Carboxylic acid derivative
Azacycle
Organooxygen compound
Organonitrogen compound
Organic oxide
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Organic nitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.52	ALOGPS
logP	2.85	ChemAxon
logS	-3	ALOGPS
pKa (Strongest Acidic)	9.51	ChemAxon
pKa (Strongest Basic)	-0.13	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	40.54 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	79.12 m³·mol⁻¹	ChemAxon
Polarizability	29.93 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00055009

Chemspider ID

8306836

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10131321

PDB ID

Not Available

ChEBI ID

169029

Good Scents ID

Not Available

References

General References

Liu W, Jiang Z, Chen J, Zhang X, Ma Y: [Chemical constituents from Piper longum]. Zhongguo Zhong Yao Za Zhi. 2009 Nov;34(22):2891-4. [PubMed:20209953 ]
Khasamwala RH, Ranjani S, Nivetha SS, Hemalatha S: COVID-19: an In Silico Analysis on Potential Therapeutic Uses of Trikadu as Immune System Boosters. Appl Biochem Biotechnol. 2022 Jan;194(1):291-301. doi: 10.1007/s12010-021-03793-5. Epub 2022 Jan 6. [PubMed:34988845 ]
Kadosh Y, Muthuraman S, Yaniv K, Baruch Y, Gopas J, Kushmaro A, Kumar RS: Quorum Sensing and NF-kappaB Inhibition of Synthetic Coumaperine Derivatives from Piper nigrum. Molecules. 2021 Apr 15;26(8). pii: molecules26082293. doi: 10.3390/molecules26082293. [PubMed:33921056 ]
Muthuraman S, Sinha S, Vasavi CS, Waidha KM, Basu B, Munussami P, Balamurali MM, Doble M, Saravana Kumar R: Design, synthesis and identification of novel coumaperine derivatives for inhibition of human 5-LOX: Antioxidant, pseudoperoxidase and docking studies. Bioorg Med Chem. 2019 Feb 15;27(4):604-619. doi: 10.1016/j.bmc.2018.12.043. Epub 2019 Jan 3. [PubMed:30638966 ]
Nandakumar N, Muthuraman S, Gopinath P, Nithya P, Gopas J, Kumar RS: Synthesis of coumaperine derivatives: Their NF-kappaB inhibitory effect, inhibition of cell migration and their cytotoxic activity. Eur J Med Chem. 2017 Jan 5;125:1076-1087. doi: 10.1016/j.ejmech.2016.10.047. Epub 2016 Oct 22. [PubMed:27810594 ]

Showing NP-Card for Coumaperine (NP0085227)

MOL for NP0085227 (Coumaperine)

3D MOL for NP0085227 (Coumaperine)

3D SDF for NP0085227 (Coumaperine)

3D-SDF for NP0085227 (Coumaperine)

PDB for NP0085227 (Coumaperine)

3D PDB for NP0085227 (Coumaperine)

SMILES for NP0085227 (Coumaperine)

INCHI for NP0085227 (Coumaperine)

Structure for NP0085227 (Coumaperine)

3D Structure for NP0085227 (Coumaperine)