NP-MRD: Showing NP-Card for N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine (NP0084904)

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Record Information

Version

2.0

Created at

2022-04-29 05:31:00 UTC

Updated at

2022-04-29 05:31:00 UTC

NP-MRD ID

NP0084904

Secondary Accession Numbers

None

Natural Product Identification

Common Name

N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine

Description

(2S,4S)-2-amino-4-hydroxy-4-{[(2S)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl]-C-hydroxycarbonimidoyl}butanoic acid belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom. N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine is found in Hemerocallis fulva . Based on a literature review very few articles have been published on (2S,4S)-2-amino-4-hydroxy-4-{[(2S)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl]-C-hydroxycarbonimidoyl}butanoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 34 34  0  0  0  0  0  0  0  0999 V2000
    4.5860   -1.5864   -1.4208 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7609   -0.4960   -0.8577 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3234   -0.7803   -1.0801 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4234    0.2714   -0.5572 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4667    0.5069    0.7941 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0173   -0.0236   -0.8890 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3623   -0.2805   -2.0708 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0232   -0.0224    0.1054 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4053   -0.3010   -0.1868 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7263   -1.4915    0.5036 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1696   -1.0940    1.7630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7930    0.2546    1.4904 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3301    0.7094    0.3333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6825    1.9973   -0.3115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5931    2.7154    0.4588 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0987   -0.4617    0.5713 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6173   -1.4613    1.1314 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8678    0.6482    1.3301 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1955   -2.5085   -1.1793 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5828   -1.4630   -1.1956 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0478    0.4320   -1.3768 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0547   -1.7315   -0.5239 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0833   -1.0348   -2.1431 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6014    1.2629   -1.0840 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2786   -0.3323    1.2874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7516    0.1878    1.0829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5317   -0.5065   -1.2809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9331   -1.8070    2.1109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3265   -0.9879    2.4649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4984    0.7297    2.1630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7834    2.6364   -0.4184 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1156    1.8700   -1.3234 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0478    3.3685   -0.1403 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1024    0.7798    2.2844 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
  2 16  1  0
 16 18  1  0
 16 17  2  0
 13  9  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  6
  3 22  1  0
  3 23  1  0
  4 24  1  6
  5 25  1  0
  8 26  1  0
  9 27  1  6
 11 28  1  0
 11 29  1  0
 12 30  1  0
 14 31  1  0
 14 32  1  0
 15 33  1  0
 18 34  1  0
M  END


  Mrv1652304292207312D          

 18 18  0  0  1  0            999 V2000
    1.4334   -2.4815    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6050   -1.6745    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9919   -1.1225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1849   -1.2940    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2276   -0.5795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3244    0.0336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0781   -0.3020    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7926    0.1105    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5070   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2215    0.1105    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2215    0.9355    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9360   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6505    0.1105    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3649   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0794    0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3649   -1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6505    0.9355    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5070   -1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  3  7  1  0  0  0  0
  7  8  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
 13 17  1  6  0  0  0
  9 18  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0084904

> <DATABASE_NAME>
NP-MRD

> <SMILES>
N[C@@H](C[C@H](O)C(=O)N[C@H]1OCC=C1CO)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C10H16N2O6/c11-6(10(16)17)3-7(14)8(15)12-9-5(4-13)1-2-18-9/h1,6-7,9,13-14H,2-4,11H2,(H,12,15)(H,16,17)/t6-,7-,9-/m0/s1

> <INCHI_KEY>
FKPGGSOHTXQOGP-ZKWXMUAHSA-N

> <FORMULA>
C10H16N2O6

> <MOLECULAR_WEIGHT>
260.246

> <EXACT_MASS>
260.100836243

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
24.41446981741499

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,4S)-2-amino-4-hydroxy-4-{[(2S)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl]carbamoyl}butanoic acid

> <ALOGPS_LOGP>
-3.03

> <JCHEM_LOGP>
-5.124087083389792

> <ALOGPS_LOGS>
-0.81

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.513722832101477

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8461707516440953

> <JCHEM_PKA_STRONGEST_BASIC>
8.932855867636276

> <JCHEM_POLAR_SURFACE_AREA>
142.11

> <JCHEM_REFRACTIVITY>
59.6426

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.03e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,4S)-2-amino-4-hydroxy-4-{[(2S)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl]carbamoyl}butanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  O   UNK     0       2.676  -4.632   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.996  -3.126   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.851  -2.095   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.345  -2.415   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.425  -1.082   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       0.606   0.063   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.012  -0.564   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       3.346   0.206   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       4.680  -0.564   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.013   0.206   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       6.013   1.746   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       7.347  -0.564   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.681   0.206   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.015  -0.564   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      11.348   0.206   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      10.015  -2.104   0.000  0.00  0.00           O+0
HETATM   17  N   UNK     0       8.681   1.746   0.000  0.00  0.00           N+0
HETATM   18  O   UNK     0       4.680  -2.104   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    7                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    3    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   18                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   17                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17   13                                                            
CONECT   18    9                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   36    0
END

View in JSmol

Synonyms

Value	Source
(2S,4S)-2-Amino-4-hydroxy-4-{[(2S)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl]-C-hydroxycarbonimidoyl}butanoate	Generator

Chemical Formula

C₁₀H₁₆N₂O₆

Average Mass

260.2460 Da

Monoisotopic Mass

260.10084 Da

IUPAC Name

(2S,4S)-2-amino-4-hydroxy-4-{[(2S)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl]carbamoyl}butanoic acid

Traditional Name

(2S,4S)-2-amino-4-hydroxy-4-{[(2S)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl]carbamoyl}butanoic acid

CAS Registry Number

Not Available

SMILES

N[C@@H](C[C@H](O)C(=O)N[C@H]1OCC=C1CO)C(O)=O

InChI Identifier

InChI=1S/C10H16N2O6/c11-6(10(16)17)3-7(14)8(15)12-9-5(4-13)1-2-18-9/h1,6-7,9,13-14H,2-4,11H2,(H,12,15)(H,16,17)/t6-,7-,9-/m0/s1

InChI Key

FKPGGSOHTXQOGP-ZKWXMUAHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hemerocallis fulva	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

L-alpha-amino acids

Alternative Parents

Substituents

L-alpha-amino acid
Heterocyclic fatty acid
Hydroxy fatty acid
Short-chain hydroxy acid
Fatty acyl
1,3-aminoalcohol
Dihydrofuran
Amino acid
Secondary alcohol
Carboximidic acid
Carboximidic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Oxacycle
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Organoheterocyclic compound
Organonitrogen compound
Amine
Primary aliphatic amine
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organooxygen compound
Primary alcohol
Primary amine
Hydrocarbon derivative
Carbonyl group
Organic nitrogen compound
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3	ALOGPS
logP	-5.1	ChemAxon
logS	-0.81	ALOGPS
pKa (Strongest Acidic)	1.85	ChemAxon
pKa (Strongest Basic)	8.93	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	142.11 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	59.64 m³·mol⁻¹	ChemAxon
Polarizability	24.41 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00054532

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163097395

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine (NP0084904)

MOL for NP0084904 (N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine)

3D MOL for NP0084904 (N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine)

3D SDF for NP0084904 (N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine)

3D-SDF for NP0084904 (N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine)

PDB for NP0084904 (N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine)

3D PDB for NP0084904 (N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine)

SMILES for NP0084904 (N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine)

INCHI for NP0084904 (N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine)

Structure for NP0084904 (N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine)

3D Structure for NP0084904 (N-[2,5-Dihydro-3-(hydroxymethyl)-2-furanyl]-4-hydroxyglutamine)