NP-MRD: Showing NP-Card for Carthamoside B1 (NP0084518)

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Record Information

Version

2.0

Created at

2022-04-29 05:14:14 UTC

Updated at

2022-04-29 05:14:14 UTC

NP-MRD ID

NP0084518

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Carthamoside B1

Description

Carthamoside B1 is found in Carthamus tinctorius . Based on a literature review very few articles have been published on (2S,3R,4S,5S,6R)-2-(2,3-dimethoxy-5-methylphenoxy)-6-(hydroxymethyl)oxane-3,4,5-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 45 46  0  0  0  0  0  0  0  0999 V2000
   -5.3892   -2.0304   -1.9210 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3687   -1.0579   -1.9091 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1912   -1.2351   -1.1924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0206   -2.4021   -0.4709 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8702   -2.6117    0.2490 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6390   -3.8545    1.0435 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8993   -1.6177    0.2229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0392   -0.4576   -0.4786 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0865    0.5370   -0.5146 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1367    0.5364    0.1306 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1529    1.6091    1.0552 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3423    1.4488    1.7584 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3299    2.1373    3.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1312    3.5022    2.9780 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4453    1.9407    0.8508 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6398    2.1491    1.5295 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5927    0.8917   -0.2376 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5151    1.2631   -1.1925 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2528    0.6748   -0.8763 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3153   -0.5319   -1.5800 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2045   -0.2737   -1.1924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3788    0.8944   -1.9165 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9644    2.0586   -1.4076 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9332   -3.0430   -2.1110 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1328   -1.7992   -2.6894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8560   -2.0945   -0.9128 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7707   -3.1866   -0.4417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8638   -4.7461    0.4235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3095   -3.7821    1.9294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5841   -3.8604    1.3856 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0193   -1.8155    0.7938 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3745   -0.3577    0.7389 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5045    0.3614    1.9377 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3153    1.9739    3.5613 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5739    1.6406    3.7200 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3937    3.8489    2.0795 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1491    2.8882    0.3405 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3572    2.1752    0.8474 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9371   -0.0756    0.2247 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1906    0.5795   -1.3878 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0319    1.4630   -1.6343 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2396   -0.8686   -1.6568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0893    2.0009   -0.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9637    2.1879   -1.8764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3474    2.9391   -1.6488 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  5  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 12 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
  8 21  2  0
 21 22  1  0
 22 23  1  0
 21  3  1  0
 19 10  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  4 27  1  0
  6 28  1  0
  6 29  1  0
  6 30  1  0
  7 31  1  0
 10 32  1  1
 12 33  1  1
 13 34  1  0
 13 35  1  0
 14 36  1  0
 15 37  1  6
 16 38  1  0
 17 39  1  1
 18 40  1  0
 19 41  1  6
 20 42  1  0
 23 43  1  0
 23 44  1  0
 23 45  1  0
M  END


  Mrv1652304292207142D          

 23 24  0  0  1  0            999 V2000
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  1  0  0  0  0
  3  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 13 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
  9 19  1  0  0  0  0
  7 20  1  0  0  0  0
 20 21  1  6  0  0  0
 20 22  1  0  0  0  0
  2 22  1  0  0  0  0
 22 23  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0084518

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(C)=CC(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)=C1OC

> <INCHI_IDENTIFIER>
InChI=1S/C15H22O8/c1-7-4-8(20-2)14(21-3)9(5-7)22-15-13(19)12(18)11(17)10(6-16)23-15/h4-5,10-13,15-19H,6H2,1-3H3/t10-,11-,12+,13-,15-/m1/s1

> <INCHI_KEY>
UFXDNSRKZFKNBN-ZHZXCYKASA-N

> <FORMULA>
C15H22O8

> <MOLECULAR_WEIGHT>
330.333

> <EXACT_MASS>
330.131467668

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
32.85848090108539

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,5S,6R)-2-(2,3-dimethoxy-5-methylphenoxy)-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
-0.21

> <JCHEM_LOGP>
-0.40030874099999963

> <ALOGPS_LOGS>
-1.55

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.196042962322704

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.200012860097955

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810923549491735

> <JCHEM_POLAR_SURFACE_AREA>
117.84000000000002

> <JCHEM_REFRACTIVITY>
78.1509

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.39e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5S,6R)-2-(2,3-dimethoxy-5-methylphenoxy)-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       8.002  -3.080   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0       5.335  -4.620   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       4.001  -6.930   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667  -9.240   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       4.001 -10.010   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.001 -11.550   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.334 -10.010   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       1.334 -11.550   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.667 -12.320   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.000  -9.240   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.000  -7.700   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       1.334  -5.390   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   22                                                  
CONECT    3    2    4    6                                                  
CONECT    4    3    5                                                       
CONECT    5    4                                                            
CONECT    6    3    7                                                       
CONECT    7    6    8   20                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   19                                                  
CONECT   10    9   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11                                                            
CONECT   13   10   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17    9                                                       
CONECT   20    7   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20    2   23                                                  
CONECT   23   22                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₂O₈

Average Mass

330.3330 Da

Monoisotopic Mass

330.13147 Da

IUPAC Name

(2S,3R,4S,5S,6R)-2-(2,3-dimethoxy-5-methylphenoxy)-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

(2S,3R,4S,5S,6R)-2-(2,3-dimethoxy-5-methylphenoxy)-6-(hydroxymethyl)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

COC1=CC(C)=CC(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)=C1OC

InChI Identifier

InChI=1S/C15H22O8/c1-7-4-8(20-2)14(21-3)9(5-7)22-15-13(19)12(18)11(17)10(6-16)23-15/h4-5,10-13,15-19H,6H2,1-3H3/t10-,11-,12+,13-,15-/m1/s1

InChI Key

UFXDNSRKZFKNBN-ZHZXCYKASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Carthamus tinctorius	Plant	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.21	ALOGPS
logP	-0.4	ChemAxon
logS	-1.6	ALOGPS
pKa (Strongest Acidic)	12.2	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	117.84 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	78.15 m³·mol⁻¹	ChemAxon
Polarizability	32.86 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00053968

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163184189

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Carthamoside B1 (NP0084518)

MOL for NP0084518 (Carthamoside B1)

3D MOL for NP0084518 (Carthamoside B1)

3D SDF for NP0084518 (Carthamoside B1)

3D-SDF for NP0084518 (Carthamoside B1)

PDB for NP0084518 (Carthamoside B1)

3D PDB for NP0084518 (Carthamoside B1)

SMILES for NP0084518 (Carthamoside B1)

INCHI for NP0084518 (Carthamoside B1)

Structure for NP0084518 (Carthamoside B1)

3D Structure for NP0084518 (Carthamoside B1)