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Record Information
Version2.0
Created at2022-04-29 05:07:36 UTC
Updated at2022-04-29 05:07:36 UTC
NP-MRD IDNP0084382
Secondary Accession NumbersNone
Natural Product Identification
Common NameRimuene
DescriptionRimuene belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Rimuene is found in Cryptomeria japonica, Dacrydium cupressinum, Dacrydium nausoriense, Mesosphaerum suaveolens, Lepidothamnus intermedius, Prumnopitys andina, Prumnopitys ferruginoides, Richea continentis, Thuja occidentalis, Thuja standishii, Thujopsis dolabrata, Thymus capitatus and Xylopia sericea . Rimuene was first documented in 2001 (PMID: 11412956). Rimuene is possibly neutral (PMID: 25818694) (PMID: 19935470).
Structure
Thumb
Synonyms
ValueSource
RimuenPhytoBank
RimuenelPhytoBank
(13S)-Rosa-5,15-dienePhytoBank
Chemical FormulaC20H32
Average Mass272.4760 Da
Monoisotopic Mass272.25040 Da
IUPAC Name(4aS,4bR,7S,8aR)-7-ethenyl-1,1,4b,7-tetramethyl-1,2,3,4,4a,4b,5,6,7,8,8a,9-dodecahydrophenanthrene
Traditional Name(4aS,4bR,7S,8aR)-7-ethenyl-1,1,4b,7-tetramethyl-3,4,4a,5,6,8,8a,9-octahydro-2H-phenanthrene
CAS Registry NumberNot Available
SMILES
[H][C@]12CC=C3[C@@]([H])(CCCC3(C)C)[C@]1(C)CC[C@@](C)(C2)C=C
InChI Identifier
InChI=1S/C20H32/c1-6-19(4)12-13-20(5)15(14-19)9-10-16-17(20)8-7-11-18(16,2)3/h6,10,15,17H,1,7-9,11-14H2,2-5H3/t15-,17-,19+,20-/m1/s1
InChI KeyBAIWMJSLFJWAQP-WSTLGDPDSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Cryptomeria japonicaLOTUS Database
Dacrydium cupressinumLOTUS Database
Dacrydium nausorienseLOTUS Database
Hyptis suaveolensLOTUS Database
Lepidothamnus intermediusLOTUS Database
Prumnopitys andinaLOTUS Database
Prumnopitys ferruginoidesLOTUS Database
Richea continentisLOTUS Database
Thuja occidentalisLOTUS Database
Thuja standishiiLOTUS Database
Thujopsis dolabrataLOTUS Database
Thymus capitatusPlant
Xylopia sericeaPlant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentSesquiterpenoids
Alternative Parents
Substituents
  • Sesquiterpenoid
  • Phenanthrene
  • Hydrophenanthrene
  • Polycyclic hydrocarbon
  • Cyclic olefin
  • Unsaturated aliphatic hydrocarbon
  • Unsaturated hydrocarbon
  • Olefin
  • Hydrocarbon
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.84ALOGPS
logP5.88ChemAxon
logS-6.3ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity88.62 m³·mol⁻¹ChemAxon
Polarizability34.67 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID57259822
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound12314971
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kupeli Akkol E, Ilhan M, Ayse Demirel M, Keles H, Tumen I, Suntar I: Thuja occidentalis L. and its active compound, alpha-thujone: Promising effects in the treatment of polycystic ovary syndrome without inducing osteoporosis. J Ethnopharmacol. 2015 Jun 20;168:25-30. doi: 10.1016/j.jep.2015.03.029. Epub 2015 Mar 27. [PubMed:25818694 ]
  2. Tsiri D, Graikou K, Poblocka-Olech L, Krauze-Baranowska M, Spyropoulos C, Chinou I: Chemosystematic value of the essential oil composition of Thuja species cultivated in Poland-antimicrobial activity. Molecules. 2009 Nov 19;14(11):4707-15. doi: 10.3390/molecules14114707. [PubMed:19935470 ]
  3. Takahashi K, Nagahama S, Nakashima T, Suenaga H: Chemotaxonomy on the leaf constituents of Thujopsis dolabrata Sieb. et Zucc.-Analysis of neutral extracts (diterpene hydrocarbon). Biochem Syst Ecol. 2001 Aug;29(8):839-848. doi: 10.1016/s0305-1978(01)00026-6. [PubMed:11412956 ]