NP-MRD: Showing NP-Card for Gulypyrone B (NP0084077)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-04-29 04:55:29 UTC

Updated at

2022-04-29 04:55:29 UTC

NP-MRD ID

NP0084077

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gulypyrone B

Description

Nectriapyrone D, also known as gulypyrone b, belongs to the class of organic compounds known as pyranones and derivatives. Pyranones and derivatives are compounds containing a pyran ring which bears a ketone. Nectriapyrone D is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Gulypyrone B is found in Carthamus Ianatus. Gulypyrone B was first documented in 2015 (PMID: 25700035). Based on a literature review a small amount of articles have been published on nectriapyrone D.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 29 29  0  0  0  0  0  0  0  0999 V2000
   -3.2053   -0.6921   -1.5322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2281   -0.2326   -0.1931 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0170   -0.0124    0.4307 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8005   -0.2255   -0.2083 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3772    0.0075    0.4531 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7065   -0.1955   -0.1577 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8464   -0.6639   -1.5426 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8008    0.0460    0.5412 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1574   -0.1417   -0.0245 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8713    1.0516   -0.0148 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3021    0.4370    1.7059 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8208    0.6455    2.3300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8440    1.0592    3.5360 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0411    0.4335    1.7303 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3085    0.6780    2.4614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9821    0.1288   -2.2496 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2326   -1.0598   -1.8215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5408   -1.5727   -1.6698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8174   -0.5713   -1.2139 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4650   -1.6117   -1.5829 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9242   -0.7824   -2.1046 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4780    0.0586   -2.1488 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7018    0.3966    1.5728 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0899   -0.5088   -1.0649 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7240   -0.8622    0.6027 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3032    1.8451   -0.0076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0995    0.9633    1.7179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1892    1.5798    3.1175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6209   -0.1980    3.0644 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 14  2  0
 14 15  1  0
 14 12  1  0
 12 13  2  0
 12 11  1  0
 11  5  1  0
  5  4  2  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
  4  3  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
 15 27  1  0
 15 28  1  0
 15 29  1  0
  4 19  1  0
  7 20  1  0
  7 21  1  0
  7 22  1  0
  8 23  1  0
  9 24  1  0
  9 25  1  0
 10 26  1  0
M  END


  Mrv1652304292206552D          

 15 15  0  0  0  0            999 V2000
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  4 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 11 14  2  0  0  0  0
  2 14  1  0  0  0  0
 14 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0084077

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(C)C(=O)OC(=C1)C(\C)=C\CO

> <INCHI_IDENTIFIER>
InChI=1S/C11H14O4/c1-7(4-5-12)9-6-10(14-3)8(2)11(13)15-9/h4,6,12H,5H2,1-3H3/b7-4+

> <INCHI_KEY>
DDLZRFCVVWLJQN-QPJJXVBHSA-N

> <FORMULA>
C11H14O4

> <MOLECULAR_WEIGHT>
210.229

> <EXACT_MASS>
210.089208931

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
29

> <JCHEM_AVERAGE_POLARIZABILITY>
22.08989488334342

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
6-[(2E)-4-hydroxybut-2-en-2-yl]-4-methoxy-3-methyl-2H-pyran-2-one

> <ALOGPS_LOGP>
1.51

> <JCHEM_LOGP>
0.7811265066666666

> <ALOGPS_LOGS>
-2.00

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.595120113900656

> <JCHEM_PKA_STRONGEST_BASIC>
-2.5384944621798518

> <JCHEM_POLAR_SURFACE_AREA>
55.760000000000005

> <JCHEM_REFRACTIVITY>
59.05950000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.09e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6-[(2E)-4-hydroxybut-2-en-2-yl]-4-methoxy-3-methylpyran-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       5.335  -4.620   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   14                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   10                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8                                                            
CONECT   10    4   11                                                       
CONECT   11   10   12   14                                                  
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14   11    2   15                                                  
CONECT   15   14                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   30    0
END

View in JSmol

Synonyms

Value	Source
6-[(1E)-3-Hydroxy-1-methylpropenyl]-4-methoxy-3-methylpyran-2-one	ChEBI
Gulypyrone b	ChEBI
Nectriapyrone D	ChEBI

Chemical Formula

C₁₁H₁₄O₄

Average Mass

210.2290 Da

Monoisotopic Mass

210.08921 Da

IUPAC Name

6-[(2E)-4-hydroxybut-2-en-2-yl]-4-methoxy-3-methyl-2H-pyran-2-one

Traditional Name

6-[(2E)-4-hydroxybut-2-en-2-yl]-4-methoxy-3-methylpyran-2-one

CAS Registry Number

Not Available

SMILES

COC1=C(C)C(=O)OC(=C1)C(\C)=C\CO

InChI Identifier

InChI=1S/C11H14O4/c1-7(4-5-12)9-6-10(14-3)8(2)11(13)15-9/h4,6,12H,5H2,1-3H3/b7-4+

InChI Key

DDLZRFCVVWLJQN-QPJJXVBHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Carthamus Ianatus	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyranones and derivatives. Pyranones and derivatives are compounds containing a pyran ring which bears a ketone.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyrans

Sub Class

Pyranones and derivatives

Direct Parent

Pyranones and derivatives

Alternative Parents

Substituents

Pyranone
Alkyl aryl ether
Heteroaromatic compound
Vinylogous ester
Lactone
Oxacycle
Ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.51	ALOGPS
logP	0.78	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	15.6	ChemAxon
pKa (Strongest Basic)	-2.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	55.76 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	59.06 m³·mol⁻¹	ChemAxon
Polarizability	22.09 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00053283

Chemspider ID

44210753

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

135563708

PDB ID

Not Available

ChEBI ID

142799

Good Scents ID

Not Available

References

General References

Andolfi A, Boari A, Evidente M, Cimmino A, Vurro M, Ash G, Evidente A: Gulypyrones A and B and Phomentrioloxins B and C Produced by Diaporthe gulyae, a Potential Mycoherbicide for Saffron Thistle (Carthamus lanatus). J Nat Prod. 2015 Apr 24;78(4):623-9. doi: 10.1021/np500570h. Epub 2015 Feb 20. [PubMed:25700035 ]

Showing NP-Card for Gulypyrone B (NP0084077)

MOL for NP0084077 (Gulypyrone B)

3D MOL for NP0084077 (Gulypyrone B)

3D SDF for NP0084077 (Gulypyrone B)

3D-SDF for NP0084077 (Gulypyrone B)

PDB for NP0084077 (Gulypyrone B)

3D PDB for NP0084077 (Gulypyrone B)

SMILES for NP0084077 (Gulypyrone B)

INCHI for NP0084077 (Gulypyrone B)

Structure for NP0084077 (Gulypyrone B)

3D Structure for NP0084077 (Gulypyrone B)