NP-MRD: Showing NP-Card for Cinchonamine (NP0083491)

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Record Information

Version

2.0

Created at

2022-04-29 04:31:20 UTC

Updated at

2022-04-29 04:31:21 UTC

NP-MRD ID

NP0083491

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cinchonamine

Description

Cinchonamine belongs to the class of organic compounds known as 3-alkylindoles. 3-Alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position. Cinchonamine is found in Cinchona calisaya, Cinchona pubescens and Remijia purdieana. Based on a literature review very few articles have been published on Cinchonamine.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 46 49  0  0  0  0  0  0  0  0999 V2000
    5.5159   -1.1217    0.9984 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1809   -1.0535    0.9640 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4774   -0.4458   -0.1914 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4619   -1.3698   -0.8419 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2591   -0.5856   -1.1727 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.6937    0.5605   -1.8646 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4071    1.5639   -0.9970 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7313    0.8309    0.2733 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5406    0.4140    1.0067 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5807   -0.4172    0.1130 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7293    0.2531    0.1029 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0182    1.5342   -0.2306 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3551    1.7816   -0.1701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1297    2.9163   -0.3956 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4770    2.8603   -0.2160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1189    1.7096    0.1812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3165    0.5777    0.3968 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9512    0.6267    0.2178 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9221   -0.3250    0.3806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3062   -1.6930    0.8001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6082   -2.5287   -0.4227 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0347   -3.8099   -0.0107 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0275   -1.5913    1.8838 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1549   -0.7485    0.2170 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6441   -1.4418    1.8038 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2281   -0.1020   -0.9304 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9302   -1.7466   -1.7832 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2239   -2.1572   -0.1085 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9710    1.0113   -2.5861 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5009    0.2136   -2.5860 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3771    1.8958   -1.4578 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8670    2.5094   -0.7978 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4146    1.4083    0.9296 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9752    1.1413    1.5844 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9270   -0.3126    1.8272 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4937   -1.4007    0.5429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3621    2.2447   -0.5265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6436    3.8014   -0.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0526    3.7807   -0.4066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1845    1.7227    0.3068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8083   -0.3278    0.7324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2586   -1.6827    1.4310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4922   -2.1506    1.4096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4598   -2.0854   -1.0101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7538   -2.6369   -1.1022 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6012   -3.6233    0.8051 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
 10 11  1  0
 11 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 19 18  1  0
 18 13  2  0
 13 12  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
  5 10  1  0
 12 11  1  0
  3  8  1  0
 17 18  1  0
 10 36  1  1
  9 34  1  0
  9 35  1  0
  8 33  1  1
  7 31  1  0
  7 32  1  0
  6 29  1  0
  6 30  1  0
  4 27  1  0
  4 28  1  0
  3 26  1  6
  2 25  1  0
  1 23  1  0
  1 24  1  0
 20 42  1  0
 20 43  1  0
 21 44  1  0
 21 45  1  0
 22 46  1  0
 12 37  1  0
 14 38  1  0
 15 39  1  0
 16 40  1  0
 17 41  1  0
M  END


  Mrv1652304292206312D          

 23 26  0  0  1  0            999 V2000
   -2.5057   -4.4808    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5057   -3.6558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7912   -3.2433    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7912   -2.4183    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0768   -2.0058    0.0000 N   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9393   -2.5558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9393   -3.1058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0768   -3.6558    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3623   -3.2433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3623   -2.4183    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3522   -2.8308    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3522   -2.0058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4384   -1.1853    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1058   -2.3414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2774   -3.1483    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6643   -3.7004    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8358   -4.5073    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6579   -1.7283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2454   -1.0138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6579   -0.2993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4829   -0.2993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8954   -1.0138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4829   -1.7283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  3  8  1  0  0  0  0
  8  7  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  5 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 14 18  1  0  0  0  0
 18 19  2  0  0  0  0
 13 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 18 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0083491

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]1(C[C@@H]2CC[N@]1C[C@@H]2C=C)C1=C(CCO)C2=C(N1)C=CC=C2

> <INCHI_IDENTIFIER>
InChI=1S/C19H24N2O/c1-2-13-12-21-9-7-14(13)11-18(21)19-16(8-10-22)15-5-3-4-6-17(15)20-19/h2-6,13-14,18,20,22H,1,7-12H2/t13-,14-,18-/m0/s1

> <INCHI_KEY>
YAUKSCGKZYUZRH-DEYYWGMASA-N

> <FORMULA>
C19H24N2O

> <MOLECULAR_WEIGHT>
296.414

> <EXACT_MASS>
296.188863401

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
34.67672805603367

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-{2-[(1S,2S,4S,5R)-5-ethenyl-1-azabicyclo[2.2.2]octan-2-yl]-1H-indol-3-yl}ethan-1-ol

> <ALOGPS_LOGP>
2.93

> <JCHEM_LOGP>
2.6838900573333335

> <ALOGPS_LOGS>
-3.39

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
16.709068968829346

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.66423977040375

> <JCHEM_PKA_STRONGEST_BASIC>
7.665627479548532

> <JCHEM_POLAR_SURFACE_AREA>
39.260000000000005

> <JCHEM_REFRACTIVITY>
90.88150000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.20e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-{2-[(1S,2S,4S,5R)-5-ethenyl-1-azabicyclo[2.2.2]octan-2-yl]-1H-indol-3-yl}ethanol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0      -4.677  -8.364   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.677  -6.824   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.344  -6.054   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.344  -4.514   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0      -2.010  -3.744   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0      -1.753  -4.771   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.753  -5.798   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.010  -6.824   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.676  -6.054   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.676  -4.514   0.000  0.00  0.00           C+0
HETATM   11  H   UNK     0       0.657  -5.284   0.000  0.00  0.00           H+0
HETATM   12  C   UNK     0       0.657  -3.744   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0       0.818  -2.213   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0       2.064  -4.371   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.384  -5.877   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.240  -6.907   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.560  -8.414   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       3.095  -3.226   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.325  -1.892   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.095  -0.559   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.635  -0.559   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.405  -1.892   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.635  -3.226   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   10                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    3    7    9                                                  
CONECT    9    8   10                                                       
CONECT   10    9    5   11   12                                             
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12   19                                                       
CONECT   14   12   15   18                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   14   19   23                                                  
CONECT   19   18   13   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   18                                                       
MASTER        0    0    0    0    0    0    0    0   23    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₄N₂O

Average Mass

296.4140 Da

Monoisotopic Mass

296.18886 Da

IUPAC Name

2-{2-[(1S,2S,4S,5R)-5-ethenyl-1-azabicyclo[2.2.2]octan-2-yl]-1H-indol-3-yl}ethan-1-ol

Traditional Name

2-{2-[(1S,2S,4S,5R)-5-ethenyl-1-azabicyclo[2.2.2]octan-2-yl]-1H-indol-3-yl}ethanol

CAS Registry Number

Not Available

SMILES

[H][C@]1(C[C@@H]2CC[N@]1C[C@@H]2C=C)C1=C(CCO)C2=C(N1)C=CC=C2

InChI Identifier

InChI=1S/C19H24N2O/c1-2-13-12-21-9-7-14(13)11-18(21)19-16(8-10-22)15-5-3-4-6-17(15)20-19/h2-6,13-14,18,20,22H,1,7-12H2/t13-,14-,18-/m0/s1

InChI Key

YAUKSCGKZYUZRH-DEYYWGMASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cinchona calisaya	LOTUS Database	35616633
Cinchona pubescens	LOTUS Database	35616633
Remijia purdieana	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 3-alkylindoles. 3-Alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Indoles

Direct Parent

3-alkylindoles

Alternative Parents

Substituents

3-alkylindole
Quinuclidine
Aralkylamine
Piperidine
Substituted pyrrole
Benzenoid
Pyrrole
Heteroaromatic compound
Tertiary amine
Tertiary aliphatic amine
Azacycle
Alcohol
Hydrocarbon derivative
Organopnictogen compound
Organic oxygen compound
Primary alcohol
Organic nitrogen compound
Organooxygen compound
Organonitrogen compound
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.93	ALOGPS
logP	2.68	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	15.66	ChemAxon
pKa (Strongest Basic)	7.67	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	39.26 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	90.88 m³·mol⁻¹	ChemAxon
Polarizability	34.68 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00052230

Chemspider ID

84968

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

94151

PDB ID

Not Available

ChEBI ID

141885

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Cinchonamine (NP0083491)

MOL for NP0083491 (Cinchonamine)

3D MOL for NP0083491 (Cinchonamine)

3D SDF for NP0083491 (Cinchonamine)

3D-SDF for NP0083491 (Cinchonamine)

PDB for NP0083491 (Cinchonamine)

3D PDB for NP0083491 (Cinchonamine)

SMILES for NP0083491 (Cinchonamine)

INCHI for NP0083491 (Cinchonamine)

Structure for NP0083491 (Cinchonamine)

3D Structure for NP0083491 (Cinchonamine)