NP-MRD: Showing NP-Card for Heteromine G (NP0083319)

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Record Information

Version

2.0

Created at

2022-04-29 04:21:57 UTC

Updated at

2022-04-29 04:21:57 UTC

NP-MRD ID

NP0083319

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Heteromine G

Description

Heteromine G belongs to the class of organic compounds known as aminopyrimidines and derivatives. These are organic compounds containing an amino group attached to a pyrimidine ring. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions. Heteromine G is found in Heterostemma brownii. Based on a literature review very few articles have been published on Heteromine G.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 31 31  0  0  0  0  0  0  0  0999 V2000
    4.1261    0.2130   -0.5959 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2092   -0.8773   -0.3811 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8219   -0.5773   -0.2012 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3543    0.6803   -0.2290 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0303    0.9671   -0.0581 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3938    2.3110   -0.0935 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5487    3.3719   -0.3139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8649   -0.0605    0.1505 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2402    0.1208    0.3418 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1206    0.6936   -0.6250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7740   -0.3184    1.6106 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0256   -0.1839    1.8345 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3676   -1.3735    0.1781 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2261   -2.4422    0.3844 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6749   -3.7426    0.4044 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9484   -1.5804    0.0024 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4456    0.6556    0.3932 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5531    1.0310   -1.1211 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0048   -0.0696   -1.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5771   -1.8358   -0.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3893    2.5451    0.0413 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4822    2.9262   -0.7377 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8202    3.8439    0.6688 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1213    4.1622   -0.9918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5653    1.6415   -0.2270 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9962   -0.0064   -0.7976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5932    0.8762   -1.5790 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1692   -0.7565    2.3853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5187   -4.4493    0.2523 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0007   -3.8148   -0.5000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1227   -3.9509    1.3442 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 16  2  0
 16 13  1  0
 13 14  1  0
 14 15  1  0
 13  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
  8  5  1  0
  5  6  1  0
  6  7  1  0
  5  4  2  0
  4  3  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
 15 29  1  0
 15 30  1  0
 15 31  1  0
 10 25  1  0
 10 26  1  0
 10 27  1  0
 11 28  1  0
  6 21  1  0
  7 22  1  0
  7 23  1  0
  7 24  1  0
M  END


  Mrv1652304292206212D          

 16 16  0  0  0  0            999 V2000
    1.4289    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  5  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
  9 12  1  0  0  0  0
  4 13  1  0  0  0  0
 13 14  1  0  0  0  0
  2 15  1  0  0  0  0
 15 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0083319

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CNC1=NC(OC)=C(N(C)C=O)C(NC)=N1

> <INCHI_IDENTIFIER>
InChI=1S/C9H15N5O2/c1-10-7-6(14(3)5-15)8(16-4)13-9(11-2)12-7/h5H,1-4H3,(H2,10,11,12,13)

> <INCHI_KEY>
AYPVLECRVLOFKA-UHFFFAOYSA-N

> <FORMULA>
C9H15N5O2

> <MOLECULAR_WEIGHT>
225.252

> <EXACT_MASS>
225.122574743

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
22.973369678939953

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
N-[4-methoxy-2,6-bis(methylamino)pyrimidin-5-yl]-N-methylformamide

> <ALOGPS_LOGP>
0.79

> <JCHEM_LOGP>
-0.24160074499999995

> <ALOGPS_LOGS>
-2.65

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.639644263384106

> <JCHEM_PKA_STRONGEST_BASIC>
6.145775354105438

> <JCHEM_POLAR_SURFACE_AREA>
79.38000000000001

> <JCHEM_REFRACTIVITY>
63.63450000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.07e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-[4-methoxy-2,6-bis(methylamino)pyrimidin-5-yl]-N-methylformamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  N   UNK     0       2.667   1.540   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0       1.334  -0.770   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      -1.334   2.310   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -2.667   4.620   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0      -1.334  -0.770   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0      -2.667   0.000   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0       4.001  -0.770   0.000  0.00  0.00           N+0
HETATM   16  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   15                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   13                                                  
CONECT    5    4    6    9                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7                                                            
CONECT    9    5   10   12                                                  
CONECT   10    9   11                                                       
CONECT   11   10                                                            
CONECT   12    9                                                            
CONECT   13    4   14                                                       
CONECT   14   13                                                            
CONECT   15    2   16                                                       
CONECT   16   15                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₉H₁₅N₅O₂

Average Mass

225.2520 Da

Monoisotopic Mass

225.12257 Da

IUPAC Name

N-[4-methoxy-2,6-bis(methylamino)pyrimidin-5-yl]-N-methylformamide

Traditional Name

N-[4-methoxy-2,6-bis(methylamino)pyrimidin-5-yl]-N-methylformamide

CAS Registry Number

Not Available

SMILES

CNC1=NC(OC)=C(N(C)C=O)C(NC)=N1

InChI Identifier

InChI=1S/C9H15N5O2/c1-10-7-6(14(3)5-15)8(16-4)13-9(11-2)12-7/h5H,1-4H3,(H2,10,11,12,13)

InChI Key

AYPVLECRVLOFKA-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Heterostemma brownii	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aminopyrimidines and derivatives. These are organic compounds containing an amino group attached to a pyrimidine ring. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Diazines

Sub Class

Pyrimidines and pyrimidine derivatives

Direct Parent

Aminopyrimidines and derivatives

Alternative Parents

Substituents

Alkyl aryl ether
Aminopyrimidine
Imidolactam
Heteroaromatic compound
Tertiary carboxylic acid amide
Carboxamide group
Carboxylic acid derivative
Azacycle
Ether
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Amine
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.79	ALOGPS
logP	-0.24	ChemAxon
logS	-2.6	ALOGPS
pKa (Strongest Acidic)	16.64	ChemAxon
pKa (Strongest Basic)	6.15	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	79.38 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	63.63 m³·mol⁻¹	ChemAxon
Polarizability	22.97 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00050366

Chemspider ID

8736552

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10561164

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Heteromine G (NP0083319)

MOL for NP0083319 (Heteromine G)

3D MOL for NP0083319 (Heteromine G)

3D SDF for NP0083319 (Heteromine G)

3D-SDF for NP0083319 (Heteromine G)

PDB for NP0083319 (Heteromine G)

3D PDB for NP0083319 (Heteromine G)

SMILES for NP0083319 (Heteromine G)

INCHI for NP0083319 (Heteromine G)

Structure for NP0083319 (Heteromine G)

3D Structure for NP0083319 (Heteromine G)