NP-MRD: Showing NP-Card for (+)-Calyxolane A (NP0083290)

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Record Information

Version

2.0

Created at

2022-04-29 04:19:48 UTC

Updated at

2022-04-29 04:19:48 UTC

NP-MRD ID

NP0083290

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Calyxolane A

Description

2Alpha,4beta-Diphenyltetrahydrofuran belongs to the class of organic compounds known as benzene and substituted derivatives. These are aromatic compounds containing one monocyclic ring system consisting of benzene. (+)-Calyxolane A is found in Calyx podatypa. Based on a literature review very few articles have been published on 2alpha,4beta-Diphenyltetrahydrofuran.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 33 35  0  0  0  0  0  0  0  0999 V2000
   -4.8983   -0.5647    0.3414 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6449   -0.1041   -0.9349 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3631    0.2792   -1.3286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3017    0.2050   -0.4344 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9423    0.6128   -0.8558 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3772    1.7300   -0.0202 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4292    1.1836    0.9372 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8293   -0.0635    0.5556 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3044   -0.1895    0.4190 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0013    0.8061   -0.2363 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3908    0.7177   -0.3819 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0623   -0.3713    0.1335 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3686   -1.3592    0.7841 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0206   -1.2586    0.9170 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0815   -0.4792   -0.6613 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5703   -0.2528    0.8237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8543   -0.6373    1.2195 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9155   -0.8530    0.6042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4606   -0.0438   -1.6323 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1832    0.6357   -2.3267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9559    0.9475   -1.9072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2294    2.2600    0.4439 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2033    2.4577   -0.6369 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5447   -0.7803    1.3804 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5477    1.6810   -0.6625 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9502    1.4863   -0.8908 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1348   -0.4864    0.0474 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8813   -2.2207    1.1944 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4930   -2.0646    1.4424 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7311   -0.5049   -1.5498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4486   -1.4382   -0.5721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8070   -0.3352    1.5573 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0217   -0.9954    2.2305 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  7  1  0
  7  8  1  0
  8 15  1  0
 15  5  1  0
  5  4  1  0
  4  3  2  0
  3  2  1  0
  2  1  2  0
  1 17  1  0
 17 16  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
  5  6  1  0
 16  4  1  0
 14  9  1  0
  6 22  1  0
  6 23  1  0
  8 24  1  1
 15 30  1  0
 15 31  1  0
  5 21  1  6
  3 20  1  0
  2 19  1  0
  1 18  1  0
 17 33  1  0
 16 32  1  0
 10 25  1  0
 11 26  1  0
 12 27  1  0
 13 28  1  0
 14 29  1  0
M  END


  Mrv1652304292206192D          

 17 19  0  0  1  0            999 V2000
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3819   -1.7224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -2.5070    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3020   -2.5070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0470   -1.7224    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6119   -3.1745    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4324   -3.0882    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9173   -3.7557    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5817   -4.5094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7613   -4.5956    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2763   -3.9282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  3  6  1  1  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
  6 11  1  0  0  0  0
  1 12  1  6  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 12 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0083290

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C1O[C@@H](C[C@H]1C1=CC=CC=C1)C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C16H16O/c1-3-7-13(8-4-1)15-11-16(17-12-15)14-9-5-2-6-10-14/h1-10,15-16H,11-12H2/t15-,16+/m1/s1

> <INCHI_KEY>
DTRWVAWUKAYYNM-CVEARBPZSA-N

> <FORMULA>
C16H16O

> <MOLECULAR_WEIGHT>
224.303

> <EXACT_MASS>
224.120115135

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
25.76073246155667

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,4S)-2,4-diphenyloxolane

> <ALOGPS_LOGP>
3.82

> <JCHEM_LOGP>
3.8133638880000005

> <ALOGPS_LOGS>
-5.23

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.180535130332714

> <JCHEM_POLAR_SURFACE_AREA>
9.23

> <JCHEM_REFRACTIVITY>
69.40290000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.32e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,4S)-2,4-diphenyloxolane

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.580  -3.215   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.104  -4.680   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.564  -4.680   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.088  -3.215   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       3.009  -5.926   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.540  -5.765   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.446  -7.011   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.819  -8.417   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.288  -8.578   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.382  -7.333   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
CONECT    1    2    5   12                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4    6                                                  
CONECT    4    3    5                                                       
CONECT    5    4    1                                                       
CONECT    6    3    7   11                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    6                                                       
CONECT   12    1   13   17                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   12                                                       
MASTER        0    0    0    0    0    0    0    0   17    0   38    0
END

View in JSmol

Synonyms

Value	Source
2a,4b-Diphenyltetrahydrofuran	Generator
2Α,4β-diphenyltetrahydrofuran	Generator

Chemical Formula

C₁₆H₁₆O

Average Mass

224.3030 Da

Monoisotopic Mass

224.12012 Da

IUPAC Name

(2S,4S)-2,4-diphenyloxolane

Traditional Name

(2S,4S)-2,4-diphenyloxolane

CAS Registry Number

Not Available

SMILES

C1O[C@@H](C[C@H]1C1=CC=CC=C1)C1=CC=CC=C1

InChI Identifier

InChI=1S/C16H16O/c1-3-7-13(8-4-1)15-11-16(17-12-15)14-9-5-2-6-10-14/h1-10,15-16H,11-12H2/t15-,16+/m1/s1

InChI Key

DTRWVAWUKAYYNM-CVEARBPZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Calyx podatypa	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzene and substituted derivatives. These are aromatic compounds containing one monocyclic ring system consisting of benzene.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Not Available

Direct Parent

Benzene and substituted derivatives

Alternative Parents

Substituents

Monocyclic benzene moiety
Oxolane
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.82	ALOGPS
logP	3.81	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	9.23 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	69.4 m³·mol⁻¹	ChemAxon
Polarizability	25.76 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8784561

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10609194

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (+)-Calyxolane A (NP0083290)

MOL for NP0083290 ((+)-Calyxolane A)

3D MOL for NP0083290 ((+)-Calyxolane A)

3D SDF for NP0083290 ((+)-Calyxolane A)

3D-SDF for NP0083290 ((+)-Calyxolane A)

PDB for NP0083290 ((+)-Calyxolane A)

3D PDB for NP0083290 ((+)-Calyxolane A)

SMILES for NP0083290 ((+)-Calyxolane A)

INCHI for NP0083290 ((+)-Calyxolane A)

Structure for NP0083290 ((+)-Calyxolane A)

3D Structure for NP0083290 ((+)-Calyxolane A)