NP-MRD: Showing NP-Card for Scutalpin M (NP0083206)

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Record Information

Version

2.0

Created at

2022-04-29 04:15:10 UTC

Updated at

2022-04-29 04:15:10 UTC

NP-MRD ID

NP0083206

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Scutalpin M

Description

[(1R,4aR,5S,6R,8S,8aR)-5-[(2S,3aS,5S,6aR)-5-(acetyloxy)-hexahydrofuro[2,3-b]furan-2-yl]-8-(acetyloxy)-5,6-dimethyl-octahydro-2H-spiro[naphthalene-1,2'-oxirane]-8a-yl]methyl acetate belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups. Scutalpin M is found in Scutellaria pontica. Based on a literature review very few articles have been published on [(1R,4aR,5S,6R,8S,8aR)-5-[(2S,3aS,5S,6aR)-5-(acetyloxy)-hexahydrofuro[2,3-b]furan-2-yl]-8-(acetyloxy)-5,6-dimethyl-octahydro-2H-spiro[naphthalene-1,2'-oxirane]-8a-yl]methyl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292206152D          

 35 39  0  0  1  0            999 V2000
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M  END

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M  END


  Mrv1652304292206152D          

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 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
  4 23  1  0  0  0  0
 23 24  1  1  0  0  0
 24 25  1  0  0  0  0
 23 25  1  0  0  0  0
  4 26  1  1  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
  3 31  1  1  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
  1 35  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0083206

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1C[C@H](OC(C)=O)[C@]2(COC(C)=O)[C@H](CCC[C@]22CO2)[C@@]1(C)[C@@H]1C[C@H]2C[C@H](OC(C)=O)O[C@H]2O1

> <INCHI_IDENTIFIER>
InChI=1S/C26H38O9/c1-14-9-21(32-16(3)28)26(13-30-15(2)27)19(7-6-8-25(26)12-31-25)24(14,5)20-10-18-11-22(33-17(4)29)35-23(18)34-20/h14,18-23H,6-13H2,1-5H3/t14-,18+,19-,20+,21+,22-,23-,24+,25+,26+/m1/s1

> <INCHI_KEY>
NXWMNOGCYRGOEM-GNOXJVATSA-N

> <FORMULA>
C26H38O9

> <MOLECULAR_WEIGHT>
494.581

> <EXACT_MASS>
494.251582804

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
52.522584359541504

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(1R,4aR,5S,6R,8S,8aR)-5-[(2S,3aS,5S,6aR)-5-(acetyloxy)-hexahydrofuro[2,3-b]furan-2-yl]-8-(acetyloxy)-5,6-dimethyl-octahydro-2H-spiro[naphthalene-1,2'-oxirane]-8a-yl]methyl acetate

> <ALOGPS_LOGP>
2.50

> <JCHEM_LOGP>
2.1083335053333325

> <ALOGPS_LOGS>
-4.96

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-3.860944098550171

> <JCHEM_POLAR_SURFACE_AREA>
109.89000000000001

> <JCHEM_REFRACTIVITY>
120.5361

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.44e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,4aR,5S,6R,8S,8aR)-5-[(2S,3aS,5S,6aR)-5-(acetyloxy)-hexahydrofuro[2,3-b]furan-2-yl]-8-(acetyloxy)-5,6-dimethyl-hexahydro-2H-spiro[naphthalene-1,2'-oxirane]-8a-ylmethyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       7.957   1.058   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.920   2.197   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.415   1.868   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.947   0.401   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.984  -0.737   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.489  -0.409   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.870  -1.901   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.939  -0.927   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.211  -0.059   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.430  -1.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.911  -2.450   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       9.372  -2.405   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      12.130  -3.392   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      13.402  -2.523   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      12.969  -1.045   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      14.852  -3.042   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      15.128  -4.557   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      13.954  -5.553   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      16.578  -5.075   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.517  -2.205   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.012  -2.533   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.975  -1.395   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.443   0.072   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       1.976   0.540   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       3.114   1.577   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.778   1.932   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       3.367   2.550   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       3.198   4.081   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       1.787   4.699   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       4.439   4.993   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       4.378   3.007   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       4.846   4.474   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       4.676   6.005   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       6.350   4.803   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       9.461   1.387   0.000  0.00  0.00           C+0
CONECT    1    2    6   35                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4   31                                                  
CONECT    4    3    5   23   26                                             
CONECT    5    4    6   20                                                  
CONECT    6    5    1    7    8                                             
CONECT    7    6                                                            
CONECT    8    6    9   12                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11    8                                                       
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14   10                                                       
CONECT   16   14   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20    5   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22    4   24   25                                             
CONECT   24   23   25                                                       
CONECT   25   24   23                                                       
CONECT   26    4   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31    3   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35    1                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   78    0
END

View in JSmol

Synonyms

Value	Source
[(1R,4AR,5S,6R,8S,8ar)-5-[(2S,3as,5S,6ar)-5-(acetyloxy)-hexahydrofuro[2,3-b]furan-2-yl]-8-(acetyloxy)-5,6-dimethyl-octahydro-2H-spiro[naphthalene-1,2'-oxirane]-8a-yl]methyl acetic acid	Generator

Chemical Formula

C₂₆H₃₈O₉

Average Mass

494.5810 Da

Monoisotopic Mass

494.25158 Da

IUPAC Name

[(1R,4aR,5S,6R,8S,8aR)-5-[(2S,3aS,5S,6aR)-5-(acetyloxy)-hexahydrofuro[2,3-b]furan-2-yl]-8-(acetyloxy)-5,6-dimethyl-octahydro-2H-spiro[naphthalene-1,2'-oxirane]-8a-yl]methyl acetate

Traditional Name

(1R,4aR,5S,6R,8S,8aR)-5-[(2S,3aS,5S,6aR)-5-(acetyloxy)-hexahydrofuro[2,3-b]furan-2-yl]-8-(acetyloxy)-5,6-dimethyl-hexahydro-2H-spiro[naphthalene-1,2'-oxirane]-8a-ylmethyl acetate

CAS Registry Number

Not Available

SMILES

C[C@@H]1C[C@H](OC(C)=O)[C@]2(COC(C)=O)[C@H](CCC[C@]22CO2)[C@@]1(C)[C@@H]1C[C@H]2C[C@H](OC(C)=O)O[C@H]2O1

InChI Identifier

InChI=1S/C26H38O9/c1-14-9-21(32-16(3)28)26(13-30-15(2)27)19(7-6-8-25(26)12-31-25)24(14,5)20-10-18-11-22(33-17(4)29)35-23(18)34-20/h14,18-23H,6-13H2,1-5H3/t14-,18+,19-,20+,21+,22-,23-,24+,25+,26+/m1/s1

InChI Key

NXWMNOGCYRGOEM-GNOXJVATSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Scutellaria pontica	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Tricarboxylic acids and derivatives

Direct Parent

Tricarboxylic acids and derivatives

Alternative Parents

Substituents

Tricarboxylic acid or derivatives
Furofuran
Tetrahydrofuran
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.5	ALOGPS
logP	2.11	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Basic)	-3.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	109.89 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	120.54 m³·mol⁻¹	ChemAxon
Polarizability	52.52 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163105308

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Scutalpin M (NP0083206)

MOL for NP0083206 (Scutalpin M)

3D MOL for NP0083206 (Scutalpin M)

3D SDF for NP0083206 (Scutalpin M)

3D-SDF for NP0083206 (Scutalpin M)

PDB for NP0083206 (Scutalpin M)

3D PDB for NP0083206 (Scutalpin M)

SMILES for NP0083206 (Scutalpin M)

INCHI for NP0083206 (Scutalpin M)

Structure for NP0083206 (Scutalpin M)

3D Structure for NP0083206 (Scutalpin M)