NP-MRD: Showing NP-Card for (+)-Samaderine Z (NP0083189)

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Record Information

Version

1.0

Created at

2022-04-29 04:14:07 UTC

Updated at

2022-04-29 04:14:07 UTC

NP-MRD ID

NP0083189

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Samaderine Z

Description

Samaderine Z belongs to the class of organic compounds known as quassinoids. These are a group of compounds chemically degraded from triterpenes. According to their basic skeleton, quassinoids are categorized into five distinct groups, C-18, C-19, C-20, C-22 and C-25 types. The C-20 quassinoids can be further classified into two types, tetracyclic and the pentacyclic. The tetracyclic variety does not have oxygenation at C-20, while the pentacyclic quassinoids possess additional oxygenation at C-20 that allows for the formation of an additional ring. (+)-Samaderine Z is found in Samadera indica and Simba cedron. It was first documented in 1996 (PMID: 8945767). Based on a literature review very few articles have been published on samaderine Z (PMID: 9644063).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292206142D          

 28 32  0  0  1  0            999 V2000
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3688    1.1771    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7065    2.1307    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0420    1.3770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0746    1.8218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  6  0  0  0
  6  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  5 12  1  0  0  0  0
 11 13  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 10  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  9 20  1  0  0  0  0
 20 21  1  6  0  0  0
 19 22  1  1  0  0  0
 18 23  1  0  0  0  0
 23 24  1  0  0  0  0
 10 24  1  6  0  0  0
 18 25  1  6  0  0  0
 16 26  1  6  0  0  0
  6 27  1  6  0  0  0
  4 28  1  0  0  0  0
M  END

     RDKit          3D

 54 58  0  0  0  0  0  0  0  0999 V2000
   -4.1273    1.8537   -0.4015 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3323    0.8335    0.3168 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9926   -0.0722    1.0121 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2274   -1.0795    1.7218 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6082   -1.4924    2.8491 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0006   -1.5940    1.0761 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3913   -2.7899    0.4212 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3460   -0.6515    0.1284 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7646   -1.0657   -1.2678 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8576    0.7630    0.3090 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3173    1.7011   -0.7316 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1033    1.5693   -1.0772 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7897    2.7547   -0.6238 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4094    2.8147    0.6164 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3011    3.8202    1.3231 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1890    1.5817    0.9868 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4790    2.0170    1.2533 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1954    0.7432   -0.1971 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8747   -0.5444   -0.2400 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3585   -0.5321   -0.1467 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5613   -0.9651   -1.5569 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3366   -0.4742   -1.8967 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7992    0.3181   -0.6953 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1381   -0.5357    0.3088 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8400   -1.8527    0.4484 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5805   -2.7487   -0.5852 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3261   -1.6283    0.6377 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7031   -1.5408    1.9539 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5241    1.4806   -1.3708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5770    2.7761   -0.6193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0382    2.1674    0.1800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0963   -0.0653    1.0573 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3535   -1.9344    1.9057 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2991   -2.7069    0.0469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5763   -0.3195   -2.0348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8931   -1.1478   -1.2071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4421   -2.0931   -1.5341 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4948    1.1137    1.2972 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5462    2.7402   -0.3460 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0128    1.6209   -1.6206 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1868    1.6488   -2.2054 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7607    1.2125    1.9052 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7252    2.6389    0.5054 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5878    1.3643   -1.0586 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8419   -0.3243   -1.1423 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7310   -1.5488    0.1468 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7786    0.1857    0.5614 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5043    0.3157   -2.6877 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6357   -1.1797   -2.3107 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2624   -0.0309    1.3156 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5465   -2.4079    1.3895 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3156   -3.4098   -0.5859 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8026   -2.5830    0.2551 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1548   -0.7165    2.2142 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  6
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 19 20  1  6
 19 21  1  0
 21 22  1  0
 23 22  1  6
 23 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  1  0
 27 28  1  0
 10  2  1  0
 23 12  1  0
 24  8  1  0
 23 18  1  0
 27 19  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  3 32  1  0
  6 33  1  1
  7 34  1  0
  9 35  1  0
  9 36  1  0
  9 37  1  0
 10 38  1  1
 11 39  1  0
 11 40  1  0
 12 41  1  6
 16 42  1  1
 17 43  1  0
 18 44  1  6
 20 45  1  0
 20 46  1  0
 20 47  1  0
 22 48  1  0
 22 49  1  0
 24 50  1  1
 25 51  1  1
 26 52  1  0
 27 53  1  6
 28 54  1  0
M  END


  Mrv1652304292206142D          

 28 32  0  0  1  0            999 V2000
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3688    1.1771    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7065    2.1307    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0420    1.3770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0746    1.8218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  6  0  0  0
  6  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  5 12  1  0  0  0  0
 11 13  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 10  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  9 20  1  0  0  0  0
 20 21  1  6  0  0  0
 19 22  1  1  0  0  0
 18 23  1  0  0  0  0
 23 24  1  0  0  0  0
 10 24  1  6  0  0  0
 18 25  1  6  0  0  0
 16 26  1  6  0  0  0
  6 27  1  6  0  0  0
  4 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0083189

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CC(=O)[C@@H](O)[C@@]2(C)[C@H]1C[C@H]1OC(=O)[C@H](O)[C@H]3[C@]4(C)OC[C@]13[C@@H]2[C@@H](O)[C@@H]4O

> <INCHI_IDENTIFIER>
InChI=1S/C20H26O8/c1-7-4-9(21)15(24)18(2)8(7)5-10-20-6-27-19(3,16(25)11(22)13(18)20)14(20)12(23)17(26)28-10/h4,8,10-16,22-25H,5-6H2,1-3H3/t8-,10+,11+,12+,13+,14-,15+,16-,18-,19-,20+/m0/s1

> <INCHI_KEY>
KDVYRSSTPWSAJC-GGUABDNCSA-N

> <FORMULA>
C20H26O8

> <MOLECULAR_WEIGHT>
394.42

> <EXACT_MASS>
394.162767797

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
38.887566287811815

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,3R,6R,8S,12S,13S,14R,15R,16S,17S)-3,12,15,16-tetrahydroxy-9,13,17-trimethyl-5,18-dioxapentacyclo[12.5.0.0^{1,6}.0^{2,17}.0^{8,13}]nonadec-9-ene-4,11-dione

> <ALOGPS_LOGP>
-0.57

> <JCHEM_LOGP>
-1.5903982913333332

> <ALOGPS_LOGS>
-1.47

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.784819638319838

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.176788089802994

> <JCHEM_PKA_STRONGEST_BASIC>
-3.3139919037006766

> <JCHEM_POLAR_SURFACE_AREA>
133.52

> <JCHEM_REFRACTIVITY>
94.27810000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.32e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,3R,6R,8S,12S,13S,14R,15R,16S,17S)-3,12,15,16-tetrahydroxy-9,13,17-trimethyl-5,18-dioxapentacyclo[12.5.0.0^{1,6}.0^{2,17}.0^{8,13}]nonadec-9-ene-4,11-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       9.336   2.310   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       8.002   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       6.668   3.850   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       4.422   2.197   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       5.335   4.620   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       2.667   6.160   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       3.185   3.977   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       3.812   2.570   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.139   3.401   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       5.335   3.080   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
CONECT    1    2    3    7                                                  
CONECT    2    1                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5   28                                                  
CONECT    5    4    6   12                                                  
CONECT    6    5    7    9   27                                             
CONECT    7    6    1    8                                                  
CONECT    8    7                                                            
CONECT    9    6   10   20                                                  
CONECT   10    9   11   17   24                                             
CONECT   11   10   12   13                                                  
CONECT   12   11    5                                                       
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   26                                                  
CONECT   17   16   10   18                                                  
CONECT   18   17   19   23   25                                             
CONECT   19   18   20   22                                                  
CONECT   20   19    9   21                                                  
CONECT   21   20                                                            
CONECT   22   19                                                            
CONECT   23   18   24                                                       
CONECT   24   23   10                                                       
CONECT   25   18                                                            
CONECT   26   16                                                            
CONECT   27    6                                                            
CONECT   28    4                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₆O₈

Average Mass

394.4200 Da

Monoisotopic Mass

394.16277 Da

IUPAC Name

(1R,2S,3R,6R,8S,12S,13S,14R,15R,16S,17S)-3,12,15,16-tetrahydroxy-9,13,17-trimethyl-5,18-dioxapentacyclo[12.5.0.0^{1,6}.0^{2,17}.0^{8,13}]nonadec-9-ene-4,11-dione

Traditional Name

(1R,2S,3R,6R,8S,12S,13S,14R,15R,16S,17S)-3,12,15,16-tetrahydroxy-9,13,17-trimethyl-5,18-dioxapentacyclo[12.5.0.0^{1,6}.0^{2,17}.0^{8,13}]nonadec-9-ene-4,11-dione

CAS Registry Number

Not Available

SMILES

CC1=CC(=O)[C@@H](O)[C@@]2(C)[C@H]1C[C@H]1OC(=O)[C@H](O)[C@H]3[C@]4(C)OC[C@]13[C@@H]2[C@@H](O)[C@@H]4O

InChI Identifier

InChI=1S/C20H26O8/c1-7-4-9(21)15(24)18(2)8(7)5-10-20-6-27-19(3,16(25)11(22)13(18)20)14(20)12(23)17(26)28-10/h4,8,10-16,22-25H,5-6H2,1-3H3/t8-,10+,11+,12+,13+,14-,15+,16-,18-,19-,20+/m0/s1

InChI Key

KDVYRSSTPWSAJC-GGUABDNCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Quassia indica	LOTUS Database	35616633
Simba cedron	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as quassinoids. These are a group of compounds chemically degraded from triterpenes. According to their basic skeleton, quassinoids are categorized into five distinct groups, C-18, C-19, C-20, C-22 and C-25 types. The C-20 quassinoids can be further classified into two types, tetracyclic and the pentacyclic. The tetracyclic variety does not have oxygenation at C-20, while the pentacyclic quassinoids possess additional oxygenation at C-20 that allows for the formation of an additional ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Quassinoids

Alternative Parents

Substituents

Triterpenoid
Polycyclic triterpenoid
C-20 quassinoid skeleton
Quassinoid
Naphthopyran
Naphthalene
Furopyran
Delta_valerolactone
Oxepane
Cyclohexenone
Delta valerolactone
Pyran
Oxane
Cyclic alcohol
Tetrahydrofuran
Furan
Lactone
Ketone
Carboxylic acid ester
Secondary alcohol
Cyclic ketone
Carboxylic acid derivative
Dialkyl ether
Ether
Oxacycle
Organoheterocyclic compound
Polyol
Monocarboxylic acid or derivatives
Carbonyl group
Alcohol
Organic oxygen compound
Organic oxide
Organooxygen compound
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

secondary alcohol (CHEBI:66164 )
organic heteropentacyclic compound (CHEBI:66164 )
enone (CHEBI:66164 )
delta-lactone (CHEBI:66164 )
cyclic ether (CHEBI:66164 )
tetrol (CHEBI:66164 )
quassinoid (CHEBI:66164 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.57	ALOGPS
logP	-1.6	ChemAxon
logS	-1.5	ALOGPS
pKa (Strongest Acidic)	12.18	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	133.52 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	94.28 m³·mol⁻¹	ChemAxon
Polarizability	38.89 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00050212

Chemspider ID

24693975

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44593590

PDB ID

Not Available

ChEBI ID

66164

Good Scents ID

Not Available

References

General References

Kitagawa I, Mahmud T, Yokota K, Nakagawa S, Mayumi T, Kobayashi M, Shibuya H: Indonesian medicinal plants. XVII. Characterization of quassinoids from the stems of Quassia indica. Chem Pharm Bull (Tokyo). 1996 Nov;44(11):2009-14. doi: 10.1248/cpb.44.2009. [PubMed:8945767 ]
Ozeki A, Hitotsuyanagi Y, Hashimoto E, Itokawa H, Takeya K, de Mello Alves S: Cytotoxic quassinoids from Simaba cedron. J Nat Prod. 1998 Jun 26;61(6):776-80. doi: 10.1021/np980023f. [PubMed:9644063 ]

Showing NP-Card for (+)-Samaderine Z (NP0083189)

MOL for NP0083189 ((+)-Samaderine Z)

3D MOL for NP0083189 ((+)-Samaderine Z)

3D SDF for NP0083189 ((+)-Samaderine Z)

3D-SDF for NP0083189 ((+)-Samaderine Z)

PDB for NP0083189 ((+)-Samaderine Z)

3D PDB for NP0083189 ((+)-Samaderine Z)

SMILES for NP0083189 ((+)-Samaderine Z)

INCHI for NP0083189 ((+)-Samaderine Z)

Structure for NP0083189 ((+)-Samaderine Z)

3D Structure for NP0083189 ((+)-Samaderine Z)