NP-MRD: Showing NP-Card for (+)-Pierisformosin D (NP0083176)

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Record Information

Version

2.0

Created at

2022-04-29 04:13:07 UTC

Updated at

2022-04-29 04:13:07 UTC

NP-MRD ID

NP0083176

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Pierisformosin D

Description

(1S,2S,3R,4R,6S,8S,9R,10R,13R,14R,16S)-2-(acetyloxy)-3,4,6,9,14-pentahydroxy-5,5,9,14-tetramethyltetracyclo[11.2.1.0¹,¹⁰.0⁴,⁸]Hexadecan-16-yl propanoate belongs to the class of organic compounds known as leucothol and grayanotoxane diterpenoids. These are diterpenoids with a structure based either on the leucothol or the grayanotoxane skeleton. (+)-Pierisformosin D is found in Pieris formosa . Based on a literature review very few articles have been published on (1S,2S,3R,4R,6S,8S,9R,10R,13R,14R,16S)-2-(acetyloxy)-3,4,6,9,14-pentahydroxy-5,5,9,14-tetramethyltetracyclo[11.2.1.0¹,¹⁰.0⁴,⁸]Hexadecan-16-yl propanoate.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304292206132D          

 34 37  0  0  1  0            999 V2000
    3.6878    0.7439    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2076    0.0731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4212    0.3225    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4154    1.1475    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1983    1.4079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7632    1.6624    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9405    1.4929    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5525    0.6896    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9792   -0.0352    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7863   -0.2114    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6845   -1.0529    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4452   -0.7657    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4241   -1.6850    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8681   -2.4319    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2227   -2.2495    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1239    0.0990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8928    0.5052    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7395    1.3530    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3889    2.1442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5316    2.1334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0582    1.0480    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3037    1.6931    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0414    2.6349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0050    2.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3212    3.5012    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2137    4.3470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5161   -0.1183    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7225    0.8002    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5451    2.0890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9415    2.5380    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5739   -0.5408    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0787   -0.1232    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5590   -0.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5355    0.9529    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  1  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  3 10  1  0  0  0  0
 10 11  1  6  0  0  0
  9 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  8 16  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 19 20  1  0  0  0  0
  7 20  1  1  0  0  0
 18 21  1  0  0  0  0
  8 21  1  0  0  0  0
 21 22  1  6  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 17 27  1  6  0  0  0
 17 28  1  1  0  0  0
  6 29  1  6  0  0  0
  6 30  1  1  0  0  0
  3 31  1  6  0  0  0
  2 32  1  0  0  0  0
  2 33  1  0  0  0  0
  1 34  1  6  0  0  0
M  END


  Mrv1652304292206132D          

 34 37  0  0  1  0            999 V2000
    3.6878    0.7439    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2076    0.0731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4212    0.3225    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4154    1.1475    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1983    1.4079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7632    1.6624    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9405    1.4929    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5525    0.6896    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9792   -0.0352    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7863   -0.2114    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6845   -1.0529    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4452   -0.7657    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4241   -1.6850    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8681   -2.4319    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2227   -2.2495    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1239    0.0990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8928    0.5052    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7395    1.3530    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3889    2.1442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5316    2.1334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0582    1.0480    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3037    1.6931    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0414    2.6349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0050    2.5394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3212    3.5012    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2137    4.3470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5161   -0.1183    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7225    0.8002    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5451    2.0890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9415    2.5380    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5739   -0.5408    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0787   -0.1232    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5590   -0.7487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5355    0.9529    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  1  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  3 10  1  0  0  0  0
 10 11  1  6  0  0  0
  9 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  8 16  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 19 20  1  0  0  0  0
  7 20  1  1  0  0  0
 18 21  1  0  0  0  0
  8 21  1  0  0  0  0
 21 22  1  6  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 17 27  1  6  0  0  0
 17 28  1  1  0  0  0
  6 29  1  6  0  0  0
  6 30  1  1  0  0  0
  3 31  1  6  0  0  0
  2 32  1  0  0  0  0
  2 33  1  0  0  0  0
  1 34  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0083176

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(=O)O[C@H]1[C@H]2CC[C@@H]3[C@]1(C[C@@]2(C)O)[C@H](OC(C)=O)[C@@H](O)[C@@]1(O)[C@@H](C[C@H](O)C1(C)C)[C@]3(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C25H40O9/c1-7-17(28)34-19-13-8-9-14-23(6,31)15-10-16(27)21(3,4)25(15,32)18(29)20(33-12(2)26)24(14,19)11-22(13,5)30/h13-16,18-20,27,29-32H,7-11H2,1-6H3/t13-,14+,15+,16+,18-,19+,20-,22-,23-,24+,25+/m1/s1

> <INCHI_KEY>
YAVPGXJCYJDEFO-CXEQXPKLSA-N

> <FORMULA>
C25H40O9

> <MOLECULAR_WEIGHT>
484.586

> <EXACT_MASS>
484.267232868

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       6.884   1.389   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.987   0.136   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.520   0.602   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.509   2.142   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.970   2.628   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.291   3.103   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.756   2.787   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.031   1.287   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.828  -0.066   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.334  -0.395   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       3.144  -1.965   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0       0.831  -1.429   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       0.792  -3.145   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       1.620  -4.540   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -0.416  -4.199   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.231   0.185   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.667   0.943   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.380   2.526   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.726   4.003   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.992   3.982   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.109   1.956   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       0.567   3.160   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -0.077   4.918   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -1.876   4.740   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.600   6.535   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.399   8.114   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -2.830  -0.221   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -3.215   1.494   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       4.751   3.899   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       3.624   4.738   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0       4.805  -1.010   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       7.614  -0.230   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       6.644  -1.398   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       8.466   1.779   0.000  0.00  0.00           O+0
CONECT    1    2    5   34                                                  
CONECT    2    1    3   32   33                                             
CONECT    3    2    4   10   31                                             
CONECT    4    3    5    6                                                  
CONECT    5    4    1                                                       
CONECT    6    4    7   29   30                                             
CONECT    7    6    8   20                                                  
CONECT    8    7    9   16   21                                             
CONECT    9    8   10   12                                                  
CONECT   10    9    3   11                                                  
CONECT   11   10                                                            
CONECT   12    9   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16    8   17                                                       
CONECT   17   16   18   27   28                                             
CONECT   18   17   19   21                                                  
CONECT   19   18   20                                                       
CONECT   20   19    7                                                       
CONECT   21   18    8   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25                                                            
CONECT   27   17                                                            
CONECT   28   17                                                            
CONECT   29    6                                                            
CONECT   30    6                                                            
CONECT   31    3                                                            
CONECT   32    2                                                            
CONECT   33    2                                                            
CONECT   34    1                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

View in JSmol

Synonyms

Value	Source
(1S,2S,3R,4R,6S,8S,9R,10R,13R,14R,16S)-2-(Acetyloxy)-3,4,6,9,14-pentahydroxy-5,5,9,14-tetramethyltetracyclo[11.2.1.0,.0,]hexadecan-16-yl propanoic acid	Generator

Chemical Formula

C₂₅H₄₀O₉

Average Mass

484.5860 Da

Monoisotopic Mass

484.26723 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CCC(=O)O[C@H]1[C@H]2CC[C@@H]3[C@]1(C[C@@]2(C)O)[C@H](OC(C)=O)[C@@H](O)[C@@]1(O)[C@@H](C[C@H](O)C1(C)C)[C@]3(C)O

InChI Identifier

InChI=1S/C25H40O9/c1-7-17(28)34-19-13-8-9-14-23(6,31)15-10-16(27)21(3,4)25(15,32)18(29)20(33-12(2)26)24(14,19)11-22(13,5)30/h13-16,18-20,27,29-32H,7-11H2,1-6H3/t13-,14+,15+,16+,18-,19+,20-,22-,23-,24+,25+/m1/s1

InChI Key

YAVPGXJCYJDEFO-CXEQXPKLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pieris formosa	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as leucothol and grayanotoxane diterpenoids. These are diterpenoids with a structure based either on the leucothol or the grayanotoxane skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Leucothol and grayanotoxane diterpenoids

Alternative Parents

Substituents

Grayanotoxane diterpenoid
Dicarboxylic acid or derivatives
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Carboxylic acid ester
Polyol
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163045818

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (+)-Pierisformosin D (NP0083176)

MOL for NP0083176 ((+)-Pierisformosin D)

3D MOL for NP0083176 ((+)-Pierisformosin D)

3D SDF for NP0083176 ((+)-Pierisformosin D)

3D-SDF for NP0083176 ((+)-Pierisformosin D)

PDB for NP0083176 ((+)-Pierisformosin D)

3D PDB for NP0083176 ((+)-Pierisformosin D)

SMILES for NP0083176 ((+)-Pierisformosin D)

INCHI for NP0083176 ((+)-Pierisformosin D)

Structure for NP0083176 ((+)-Pierisformosin D)

3D Structure for NP0083176 ((+)-Pierisformosin D)