NP-MRD: Showing NP-Card for Ethyl didehydrosecoplakortide Z (NP0082926)

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Record Information

Version

2.0

Created at

2022-04-29 04:00:03 UTC

Updated at

2022-04-29 04:00:03 UTC

NP-MRD ID

NP0082926

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Ethyl didehydrosecoplakortide Z

Description

Ethyl (3R,4Z,6S)-6-ethyl-4-ethylidene-3,6-dihydroxydecanoate belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. Ethyl didehydrosecoplakortide Z is found in Plakortis lita. Based on a literature review very few articles have been published on ethyl (3R,4Z,6S)-6-ethyl-4-ethylidene-3,6-dihydroxydecanoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 50 49  0  0  0  0  0  0  0  0999 V2000
    1.2459    2.9141   -2.3646 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2462    2.0964   -1.6632 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4510    1.1537   -0.7862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6054    0.3995   -0.1414 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0135    0.7054   -0.3968 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4719    0.5831   -1.6895 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4964    2.0259    0.2282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2161    2.1018    1.6897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8486   -0.3195    0.4172 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6865   -1.7179   -0.0808 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5938   -2.5827    0.8156 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0338   -2.1650    0.7316 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8484    0.8167   -0.4075 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7786    1.5871   -1.0762 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2058   -0.6281   -0.6539 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6368   -0.8208   -0.2334 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5539   -1.0924   -1.0390 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0147   -0.6988    1.1163 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3154   -0.8631    1.5905 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8986   -2.2409    1.3663 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8588    3.5693   -1.7090 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9098    2.3584   -3.0349 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6969    3.6589   -3.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7935    2.2839   -1.9186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4212    0.4456    0.9674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4033   -0.6959   -0.3666 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4360    0.5907   -1.7502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1713    2.9228   -0.2619 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6300    2.0316    0.1362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1658    2.0123    1.9861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9293    1.4829    2.2791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4930    3.1639    1.9950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4813   -0.2759    1.4676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8786    0.0334    0.4068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6837   -2.1170    0.0870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0224   -1.8302   -1.1316 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2591   -2.4701    1.8629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4757   -3.6522    0.5679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3656   -1.7956   -0.2377 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3037   -1.4275    1.5311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6351   -3.0976    0.9410 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9430    1.0422    0.6806 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6288    1.1066   -1.2393 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5281   -1.2719   -0.0998 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1519   -0.8999   -1.7161 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3162   -0.6298    2.6697 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0231   -0.1193    1.1082 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3851   -3.0051    1.9862 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9135   -2.4873    0.2865 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9636   -2.1815    1.6914 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  5  1  0
  5  6  1  6
  5  7  1  0
  7  8  1  0
  5  4  1  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  3 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 12 39  1  0
 12 40  1  0
 12 41  1  0
 11 37  1  0
 11 38  1  0
 10 35  1  0
 10 36  1  0
  9 33  1  0
  9 34  1  0
  6 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
  8 32  1  0
  4 25  1  0
  4 26  1  0
  2 24  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
 13 42  1  1
 14 43  1  0
 15 44  1  0
 15 45  1  0
 19 46  1  0
 19 47  1  0
 20 48  1  0
 20 49  1  0
 20 50  1  0
M  END


  Mrv1652304292206002D          

 20 19  0  0  1  0            999 V2000
    3.9039   -0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895   -1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   -1.4289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0474   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474   -2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   -3.0789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7618   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763   -1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.0638   -2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763   -3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1908   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9052   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6197   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3342   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8888   -1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   -0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  2  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  8 11  1  0  0  0  0
 12 11  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 12 19  1  6  0  0  0
  7 20  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0082926

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCC[C@@](O)(CC)C\C(=C\C)[C@H](O)CC(=O)OCC

> <INCHI_IDENTIFIER>
InChI=1S/C16H30O4/c1-5-9-10-16(19,7-3)12-13(6-2)14(17)11-15(18)20-8-4/h6,14,17,19H,5,7-12H2,1-4H3/b13-6-/t14-,16+/m1/s1

> <INCHI_KEY>
RKEPFFPHCGFVOF-HWRHMDFFSA-N

> <FORMULA>
C16H30O4

> <MOLECULAR_WEIGHT>
286.412

> <EXACT_MASS>
286.214409446

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
33.51584060602107

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
ethyl (3R,4Z,6S)-6-ethyl-4-ethylidene-3,6-dihydroxydecanoate

> <ALOGPS_LOGP>
3.43

> <JCHEM_LOGP>
2.7593580076666653

> <ALOGPS_LOGS>
-2.80

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.875709121303398

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.194729498196779

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9247686089868736

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
81.1881

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.59e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
ethyl (3R,4Z,6S)-6-ethyl-4-ethylidene-3,6-dihydroxydecanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  O   UNK     0       7.287  -1.127   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       7.287  -2.667   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       5.954  -3.437   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       4.620  -2.667   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.286  -3.437   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.621  -3.437   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.955  -2.667   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.288  -3.437   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      11.288  -4.977   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.955  -5.747   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.622  -2.667   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.956  -3.437   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      13.186  -4.771   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      13.956  -6.105   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      15.289  -4.207   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      16.623  -3.437   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      17.957  -4.207   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      19.290  -3.437   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      14.726  -2.104   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       9.955  -1.127   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4                                                            
CONECT    6    2    7                                                       
CONECT    7    6    8   20                                                  
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    8   12                                                       
CONECT   12   11   13   15   19                                             
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17                                                            
CONECT   19   12                                                            
CONECT   20    7                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   38    0
END

View in JSmol

Synonyms

Value	Source
Ethyl (3R,4Z,6S)-6-ethyl-4-ethylidene-3,6-dihydroxydecanoic acid	Generator

Chemical Formula

C₁₆H₃₀O₄

Average Mass

286.4120 Da

Monoisotopic Mass

286.21441 Da

IUPAC Name

ethyl (3R,4Z,6S)-6-ethyl-4-ethylidene-3,6-dihydroxydecanoate

Traditional Name

ethyl (3R,4Z,6S)-6-ethyl-4-ethylidene-3,6-dihydroxydecanoate

CAS Registry Number

Not Available

SMILES

CCCC[C@@](O)(CC)C\C(=C\C)[C@H](O)CC(=O)OCC

InChI Identifier

InChI=1S/C16H30O4/c1-5-9-10-16(19,7-3)12-13(6-2)14(17)11-15(18)20-8-4/h6,14,17,19H,5,7-12H2,1-4H3/b13-6-/t14-,16+/m1/s1

InChI Key

RKEPFFPHCGFVOF-HWRHMDFFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Plakortis lita	Animalia	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Fatty alcohols

Alternative Parents

Substituents

Fatty alcohol
Beta-hydroxy acid
Fatty acid ester
Hydroxy acid
Tertiary alcohol
Carboxylic acid ester
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organooxygen compound
Alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.43	ALOGPS
logP	2.76	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	14.19	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	81.19 m³·mol⁻¹	ChemAxon
Polarizability	33.52 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162951467

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Ethyl didehydrosecoplakortide Z (NP0082926)

MOL for NP0082926 (Ethyl didehydrosecoplakortide Z)

3D MOL for NP0082926 (Ethyl didehydrosecoplakortide Z)

3D SDF for NP0082926 (Ethyl didehydrosecoplakortide Z)

3D-SDF for NP0082926 (Ethyl didehydrosecoplakortide Z)

PDB for NP0082926 (Ethyl didehydrosecoplakortide Z)

3D PDB for NP0082926 (Ethyl didehydrosecoplakortide Z)

SMILES for NP0082926 (Ethyl didehydrosecoplakortide Z)

INCHI for NP0082926 (Ethyl didehydrosecoplakortide Z)

Structure for NP0082926 (Ethyl didehydrosecoplakortide Z)

3D Structure for NP0082926 (Ethyl didehydrosecoplakortide Z)