NP-MRD: Showing NP-Card for Mycaperoxide F methyl ester (NP0082910)

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Record Information

Version

2.0

Created at

2022-04-29 03:58:45 UTC

Updated at

2022-04-29 03:58:45 UTC

NP-MRD ID

NP0082910

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Mycaperoxide F methyl ester

Description

Methyl (2S)-2-[(3S,6R)-6-{2-[(1S,2R,4aR,8aR)-4a-hydroxy-2,5,5,8a-tetramethyl-decahydronaphthalen-1-yl]ethyl}-6-methyl-1,2-dioxan-3-yl]propanoate belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Mycaperoxide F methyl ester is found in Mycale spp. Based on a literature review very few articles have been published on methyl (2S)-2-[(3S,6R)-6-{2-[(1S,2R,4aR,8aR)-4a-hydroxy-2,5,5,8a-tetramethyl-decahydronaphthalen-1-yl]ethyl}-6-methyl-1,2-dioxan-3-yl]propanoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292205582D          

 30 32  0  0  1  0            999 V2000
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3873    0.7284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3873    0.7284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9966   -4.4877    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4663   -5.1197    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3461   -4.9765    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6283   -4.2012    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0980   -3.5692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8764   -5.6085    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6889   -5.4652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5943   -6.3837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2182   -6.5270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1246   -7.0157    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8424   -7.7909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5269   -3.5692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  3  7  1  0  0  0  0
  3  8  1  0  0  0  0
  2  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  1 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 15 14  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 15 20  1  0  0  0  0
 18 21  1  6  0  0  0
 21 22  1  1  0  0  0
 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 15 27  1  6  0  0  0
 11 28  1  1  0  0  0
  2 29  1  1  0  0  0
  1 30  1  6  0  0  0
M  END

     RDKit          3D

 74 76  0  0  0  0  0  0  0  0999 V2000
    7.2505    0.7908   -2.5783 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6815    0.9964   -1.3031 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7403   -0.0074   -0.3713 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3031   -1.0843   -0.6874 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1736    0.1079    0.9965 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.8041    1.2289    1.7685 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6869    0.3817    0.8293 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0289    0.5137    2.1920 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5527    0.6238    2.0198 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9985   -0.3286    0.9804 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9417   -1.6898    1.5814 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6336    0.1695    0.5154 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0252   -0.7065   -0.5009 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3362   -0.3384   -1.0298 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7446   -1.3123   -2.0759 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4582   -0.7884   -3.4936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0494   -1.9870   -1.9848 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8973   -1.6708   -0.7845 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7367   -0.1940   -0.5035 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.7949    0.4195   -1.7832 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8786    0.3647    0.2566 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.4060   -0.5063    1.3733 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0670    0.4075   -0.7399 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6724    1.7842    0.6637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3814    2.3525    0.0980 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1941    1.4960    0.4063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3582    0.0273    0.0198 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1127   -0.7473    1.2949 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8425   -0.3536   -0.1291 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0631   -0.6769    0.1724 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3424    0.6447   -2.4333 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0387    1.6381   -3.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8611   -0.1130   -3.0857 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2725   -0.8423    1.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1410    2.1199    1.8092 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7752    1.4705    1.2914 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0030    0.8866    2.8196 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4867    1.3082    0.2714 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3453   -0.2976    2.8828 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3790    1.4624    2.6919 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0706    0.3291    2.9959 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2566    1.6711    1.8292 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0158   -2.5165    0.8256 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8546   -1.8133    2.2180 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0805   -1.8429    2.2664 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0865    0.4205    1.4133 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8488    1.1718    0.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0982   -1.7982   -0.2584 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7329   -0.6506   -1.3940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1624    0.6388   -1.5853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9800   -2.1603   -2.0151 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7264    0.2766   -3.5867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9655   -1.4449   -4.2314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3759   -0.8460   -3.7407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6483   -1.8551   -2.9455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9657   -3.1248   -1.9535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6497   -2.3283    0.0452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9428   -1.9255   -1.0748 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3800   -0.0519   -2.4036 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5247   -0.3624    1.4938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3222   -1.5590    1.0355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0021   -0.2843    2.3555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4378   -0.5794   -0.9893 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8499    0.9740   -0.1486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8460    1.0811   -1.5889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4653    2.4733    0.3037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7010    1.9179    1.7855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5183    2.5891   -0.9756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2198    3.3218    0.6135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9438    1.6371    1.4768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3389    1.9718   -0.1524 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0493   -0.0506    2.1744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0201   -1.3549    1.6080 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2916   -1.4754    1.2337 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  1
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  6
 19 21  1  0
 21 22  1  1
 21 23  1  0
 21 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  1
 10 29  1  0
 29 30  1  0
 30  7  1  0
 27 14  1  0
 27 19  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  5 34  1  1
  6 35  1  0
  6 36  1  0
  6 37  1  0
  7 38  1  6
  8 39  1  0
  8 40  1  0
  9 41  1  0
  9 42  1  0
 11 43  1  0
 11 44  1  0
 11 45  1  0
 12 46  1  0
 12 47  1  0
 13 48  1  0
 13 49  1  0
 14 50  1  6
 15 51  1  1
 16 52  1  0
 16 53  1  0
 16 54  1  0
 17 55  1  0
 17 56  1  0
 18 57  1  0
 18 58  1  0
 20 59  1  0
 22 60  1  0
 22 61  1  0
 22 62  1  0
 23 63  1  0
 23 64  1  0
 23 65  1  0
 24 66  1  0
 24 67  1  0
 25 68  1  0
 25 69  1  0
 26 70  1  0
 26 71  1  0
 28 72  1  0
 28 73  1  0
 28 74  1  0
M  END


  Mrv1652304292205582D          

 30 32  0  0  1  0            999 V2000
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3873    0.7284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3873    0.7284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9966   -4.4877    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4663   -5.1197    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3461   -4.9765    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6283   -4.2012    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0980   -3.5692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8764   -5.6085    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6889   -5.4652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5943   -6.3837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2182   -6.5270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1246   -7.0157    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8424   -7.7909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5269   -3.5692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  3  7  1  0  0  0  0
  3  8  1  0  0  0  0
  2  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  1 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 15 14  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 15 20  1  0  0  0  0
 18 21  1  6  0  0  0
 21 22  1  1  0  0  0
 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 15 27  1  6  0  0  0
 11 28  1  1  0  0  0
  2 29  1  1  0  0  0
  1 30  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0082910

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)[C@@H](C)[C@@H]1CC[C@@](C)(CC[C@H]2[C@H](C)CC[C@@]3(O)C(C)(C)CCC[C@]23C)OO1

> <INCHI_IDENTIFIER>
InChI=1S/C25H44O5/c1-17-9-16-25(27)22(3,4)12-8-13-24(25,6)19(17)10-14-23(5)15-11-20(29-30-23)18(2)21(26)28-7/h17-20,27H,8-16H2,1-7H3/t17-,18+,19+,20+,23-,24-,25-/m1/s1

> <INCHI_KEY>
WCYWWYZSPHIFJY-FQCFJLTISA-N

> <FORMULA>
C25H44O5

> <MOLECULAR_WEIGHT>
424.622

> <EXACT_MASS>
424.318874517

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
50.21363455137816

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methyl (2S)-2-[(3S,6R)-6-{2-[(1S,2R,4aR,8aR)-4a-hydroxy-2,5,5,8a-tetramethyl-decahydronaphthalen-1-yl]ethyl}-6-methyl-1,2-dioxan-3-yl]propanoate

> <ALOGPS_LOGP>
5.70

> <JCHEM_LOGP>
5.614160301333335

> <ALOGPS_LOGS>
-5.90

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
0.36244674728376913

> <JCHEM_POLAR_SURFACE_AREA>
64.99000000000001

> <JCHEM_REFRACTIVITY>
116.6835

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.29e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (2S)-2-[(3S,6R)-6-{2-[(1S,2R,4aR,8aR)-4a-hydroxy-2,5,5,8a-tetramethyl-hexahydro-1H-naphthalen-1-yl]ethyl}-6-methyl-1,2-dioxan-3-yl]propanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.723   1.360   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.723   1.360   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       1.860  -8.377   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       0.870  -9.557   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -0.646  -9.289   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.173  -7.842   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.183  -6.663   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.636 -10.469   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -3.153 -10.202   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -1.109 -11.916   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       0.407 -12.184   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      -2.099 -13.096   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -1.572 -14.543   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.850  -6.663   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       1.334   0.770   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       1.334  -3.850   0.000  0.00  0.00           C+0
CONECT    1    2    6   12   30                                             
CONECT    2    1    3    9   29                                             
CONECT    3    2    4    7    8                                             
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    1                                                       
CONECT    7    3                                                            
CONECT    8    3                                                            
CONECT    9    2   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   28                                                  
CONECT   12   11    1   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   20   27                                             
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   21                                                  
CONECT   19   18   20                                                       
CONECT   20   19   15                                                       
CONECT   21   18   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25                                                            
CONECT   27   15                                                            
CONECT   28   11                                                            
CONECT   29    2                                                            
CONECT   30    1                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   64    0
END

View in JSmol

Synonyms

Value	Source
Methyl (2S)-2-[(3S,6R)-6-{2-[(1S,2R,4ar,8ar)-4a-hydroxy-2,5,5,8a-tetramethyl-decahydronaphthalen-1-yl]ethyl}-6-methyl-1,2-dioxan-3-yl]propanoic acid	Generator

Chemical Formula

C₂₅H₄₄O₅

Average Mass

424.6220 Da

Monoisotopic Mass

424.31887 Da

IUPAC Name

methyl (2S)-2-[(3S,6R)-6-{2-[(1S,2R,4aR,8aR)-4a-hydroxy-2,5,5,8a-tetramethyl-decahydronaphthalen-1-yl]ethyl}-6-methyl-1,2-dioxan-3-yl]propanoate

Traditional Name

methyl (2S)-2-[(3S,6R)-6-{2-[(1S,2R,4aR,8aR)-4a-hydroxy-2,5,5,8a-tetramethyl-hexahydro-1H-naphthalen-1-yl]ethyl}-6-methyl-1,2-dioxan-3-yl]propanoate

CAS Registry Number

Not Available

SMILES

COC(=O)[C@@H](C)[C@@H]1CC[C@@](C)(CC[C@H]2[C@H](C)CC[C@@]3(O)C(C)(C)CCC[C@]23C)OO1

InChI Identifier

InChI=1S/C25H44O5/c1-17-9-16-25(27)22(3,4)12-8-13-24(25,6)19(17)10-14-23(5)15-11-20(29-30-23)18(2)21(26)28-7/h17-20,27H,8-16H2,1-7H3/t17-,18+,19+,20+,23-,24-,25-/m1/s1

InChI Key

WCYWWYZSPHIFJY-FQCFJLTISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Mycale spp.	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Megastigmane sesquiterpenoid
Sesquiterpenoid
Ortho-dioxane
Methyl ester
Tertiary alcohol
Cyclic alcohol
Dialkyl peroxide
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.7	ALOGPS
logP	5.61	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Basic)	0.36	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	64.99 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	116.68 m³·mol⁻¹	ChemAxon
Polarizability	50.21 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163000837

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Mycaperoxide F methyl ester (NP0082910)

MOL for NP0082910 (Mycaperoxide F methyl ester)

3D MOL for NP0082910 (Mycaperoxide F methyl ester)

3D SDF for NP0082910 (Mycaperoxide F methyl ester)

3D-SDF for NP0082910 (Mycaperoxide F methyl ester)

PDB for NP0082910 (Mycaperoxide F methyl ester)

3D PDB for NP0082910 (Mycaperoxide F methyl ester)

SMILES for NP0082910 (Mycaperoxide F methyl ester)

INCHI for NP0082910 (Mycaperoxide F methyl ester)

Structure for NP0082910 (Mycaperoxide F methyl ester)

3D Structure for NP0082910 (Mycaperoxide F methyl ester)