NP-MRD: Showing NP-Card for (-)-Lungshengenin B (NP0082731)

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Record Information

Version

2.0

Created at

2022-04-29 03:48:37 UTC

Updated at

2022-04-29 03:48:37 UTC

NP-MRD ID

NP0082731

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Lungshengenin B

Description

Lungshengenin B belongs to the class of organic compounds known as kaurane diterpenoids. These are diterpene alkaloids with a structure that is based on the kaurane skeleton. Kaurane is a tetracyclic compound that arises by cyclisation of a pimarane precursor followed by rearrangement. It possesses a [3,2,1]-bicyclic ring system with C15-C16 bridge connected to C13, forming the five-membered ring D. (-)-Lungshengenin B is found in Isodon lungshengensis. Based on a literature review very few articles have been published on Lungshengenin B.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292205482D          

 38 41  0  0  1  0            999 V2000
    1.7100    2.6497    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9554    1.8050    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.0765    1.3746    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8895    1.2343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3616   -0.3352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4972   -1.1490    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  1 35  1  6  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652304292205482D          

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  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  3  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
  3 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 17 15  1  1  0  0  0
 17 18  1  0  0  0  0
  2 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 17 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 21 25  1  6  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 26 28  1  0  0  0  0
 20 29  1  6  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 19 33  1  1  0  0  0
 18 34  1  1  0  0  0
  1 35  1  6  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 36 38  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0082731

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@@H]1C(=C)[C@H]2C[C@@]11CC(=O)[C@@H]3C(C)(C)[C@@H](OC(C)=O)[C@@H](OC(C)=O)[C@H](O)[C@@]3(C)[C@@H]1[C@H](C2)OC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C28H38O10/c1-12-17-9-19(35-13(2)29)22-27(8)21(18(33)11-28(22,10-17)24(12)37-15(4)31)26(6,7)25(38-16(5)32)20(23(27)34)36-14(3)30/h17,19-25,34H,1,9-11H2,2-8H3/t17-,19+,20+,21-,22+,23+,24-,25+,27-,28+/m1/s1

> <INCHI_KEY>
CXQSBKKFTCJQCK-NLLYWUAQSA-N

> <FORMULA>
C28H38O10

> <MOLECULAR_WEIGHT>
534.602

> <EXACT_MASS>
534.246497424

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
54.73538913894747

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,4R,6R,7S,8R,9S,10R,11S,13S,15R)-6,7,11-tris(acetyloxy)-8-hydroxy-5,5,9-trimethyl-14-methylidene-3-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-15-yl acetate

> <ALOGPS_LOGP>
1.28

> <JCHEM_LOGP>
0.8490100383333347

> <ALOGPS_LOGS>
-4.09

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.664184712146245

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.61498018758542

> <JCHEM_PKA_STRONGEST_BASIC>
-3.40457413679756

> <JCHEM_POLAR_SURFACE_AREA>
142.50000000000003

> <JCHEM_REFRACTIVITY>
129.95819999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.31e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4R,6R,7S,8R,9S,10R,11S,13S,15R)-6,7,11-tris(acetyloxy)-8-hydroxy-5,5,9-trimethyl-14-methylidene-3-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-15-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       3.192   4.946   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.650   3.369   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.532   2.148   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.644   3.143   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.568   4.012   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.614   5.242   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.143   2.566   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.660   2.304   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.020   1.434   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.767  -0.085   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      -0.675  -0.626   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -0.928  -2.145   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.864   0.353   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.102   0.680   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.613   0.369   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       5.095  -1.094   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       5.647   1.524   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.183   2.993   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.222   4.129   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.726   3.797   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.190   2.329   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.151   1.192   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.250   0.114   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.872  -0.322   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       9.694   1.997   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      10.159   0.528   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      11.662   0.196   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       9.119  -0.608   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       8.765   4.933   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       8.301   6.402   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       6.797   6.734   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       9.340   7.538   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       5.758   5.597   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       4.736   4.466   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       4.227   6.087   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       3.756   7.553   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       2.251   7.879   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0       4.791   8.694   0.000  0.00  0.00           C+0
CONECT    1    2    6   35                                                  
CONECT    2    1    3   18                                                  
CONECT    3    2    4    9   14                                             
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7    3   10                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    3   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   22                                                  
CONECT   18   17    2   19   34                                             
CONECT   19   18   20   33                                                  
CONECT   20   19   21   29                                                  
CONECT   21   20   22   25                                                  
CONECT   22   21   17   23   24                                             
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   21   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26                                                            
CONECT   29   20   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30                                                            
CONECT   33   19                                                            
CONECT   34   18                                                            
CONECT   35    1   36                                                       
CONECT   36   35   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36                                                            
MASTER        0    0    0    0    0    0    0    0   38    0   82    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₈O₁₀

Average Mass

534.6020 Da

Monoisotopic Mass

534.24650 Da

IUPAC Name

(1S,4R,6R,7S,8R,9S,10R,11S,13S,15R)-6,7,11-tris(acetyloxy)-8-hydroxy-5,5,9-trimethyl-14-methylidene-3-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-15-yl acetate

Traditional Name

(1S,4R,6R,7S,8R,9S,10R,11S,13S,15R)-6,7,11-tris(acetyloxy)-8-hydroxy-5,5,9-trimethyl-14-methylidene-3-oxotetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-15-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@@H]1C(=C)[C@H]2C[C@@]11CC(=O)[C@@H]3C(C)(C)[C@@H](OC(C)=O)[C@@H](OC(C)=O)[C@H](O)[C@@]3(C)[C@@H]1[C@H](C2)OC(C)=O

InChI Identifier

InChI=1S/C28H38O10/c1-12-17-9-19(35-13(2)29)22-27(8)21(18(33)11-28(22,10-17)24(12)37-15(4)31)26(6,7)25(38-16(5)32)20(23(27)34)36-14(3)30/h17,19-25,34H,1,9-11H2,2-8H3/t17-,19+,20+,21-,22+,23+,24-,25+,27-,28+/m1/s1

InChI Key

CXQSBKKFTCJQCK-NLLYWUAQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Isodon lungshengensis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as kaurane diterpenoids. These are diterpene alkaloids with a structure that is based on the kaurane skeleton. Kaurane is a tetracyclic compound that arises by cyclisation of a pimarane precursor followed by rearrangement. It possesses a [3,2,1]-bicyclic ring system with C15-C16 bridge connected to C13, forming the five-membered ring D.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Kaurane diterpenoids

Alternative Parents

Substituents

Kaurane diterpenoid
Tetracarboxylic acid or derivatives
Cyclitol or derivatives
Cyclic alcohol
Secondary alcohol
Ketone
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.28	ALOGPS
logP	0.85	ChemAxon
logS	-4.1	ALOGPS
pKa (Strongest Acidic)	13.61	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	142.5 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	129.96 m³·mol⁻¹	ChemAxon
Polarizability	54.74 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00049648

Chemspider ID

16738098

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

20056110

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for (-)-Lungshengenin B (NP0082731)

MOL for NP0082731 ((-)-Lungshengenin B)

3D MOL for NP0082731 ((-)-Lungshengenin B)

3D SDF for NP0082731 ((-)-Lungshengenin B)

3D-SDF for NP0082731 ((-)-Lungshengenin B)

PDB for NP0082731 ((-)-Lungshengenin B)

3D PDB for NP0082731 ((-)-Lungshengenin B)

SMILES for NP0082731 ((-)-Lungshengenin B)

INCHI for NP0082731 ((-)-Lungshengenin B)

Structure for NP0082731 ((-)-Lungshengenin B)

3D Structure for NP0082731 ((-)-Lungshengenin B)