NP-MRD: Showing NP-Card for Decinnamoyltaxinine B 11,12-epoxide (NP0082560)

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Record Information

Version

2.0

Created at

2022-04-29 03:37:15 UTC

Updated at

2022-04-29 03:37:15 UTC

NP-MRD ID

NP0082560

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Decinnamoyltaxinine B 11,12-epoxide

Description

(11R,12S)-2alpha,7beta,9alpha,10beta-Tetraacetoxy-5alpha-hydroxy-11,12-epoxytax-4(20)-en-13-one belongs to the class of organic compounds known as tetracarboxylic acids and derivatives. These are carboxylic acids containing exactly four carboxyl groups. Decinnamoyltaxinine B 11,12-epoxide is found in Taxus canadensis, Taxus cuspidata, Taxus wallichiana and Taxus yunnanensis. Based on a literature review very few articles have been published on (11R,12S)-2alpha,7beta,9alpha,10beta-Tetraacetoxy-5alpha-hydroxy-11,12-epoxytax-4(20)-en-13-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292205372D          

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M  END

     RDKit          3D

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M  END


  Mrv1652304292205372D          

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    1.2612   -0.3864    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8450   -1.0987    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8525    0.3302    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2097    1.5310    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9051    0.9893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  4  3  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  0  0  0  0
  6  9  1  6  0  0  0
  6 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  4 14  1  0  0  0  0
 14 15  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 13 19  1  6  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 12 23  1  0  0  0  0
 23 24  1  6  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 21 28  1  1  0  0  0
 12 29  1  6  0  0  0
 11 30  1  1  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 10 34  1  6  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
  5 38  1  0  0  0  0
  5 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0082560

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@H]1C[C@H](O)C(=C)[C@H]2[C@H](OC(C)=O)[C@@H]3CC(=O)[C@@]4(C)O[C@@]4([C@@H](OC(C)=O)[C@H](OC(C)=O)[C@]12C)C3(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C28H38O11/c1-12-18(33)11-20(35-13(2)29)26(8)21(12)22(36-14(3)30)17-10-19(34)27(9)28(39-27,25(17,6)7)24(38-16(5)32)23(26)37-15(4)31/h17-18,20-24,33H,1,10-11H2,2-9H3/t17-,18-,20-,21-,22+,23-,24-,26+,27+,28-/m0/s1

> <INCHI_KEY>
OYGYAJRTYGLJDV-GMZLKGLPSA-N

> <FORMULA>
C28H38O11

> <MOLECULAR_WEIGHT>
550.601

> <EXACT_MASS>
550.241412044

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
77

> <JCHEM_AVERAGE_POLARIZABILITY>
54.69696850950615

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,3R,4S,5S,7S,9R,10R,11R,14S)-3,5,10-tris(acetyloxy)-7-hydroxy-4,14,16,16-tetramethyl-8-methylidene-13-oxo-15-oxatetracyclo[9.4.1.0^{1,14}.0^{4,9}]hexadecan-2-yl acetate

> <ALOGPS_LOGP>
2.04

> <JCHEM_LOGP>
0.6394421643333339

> <ALOGPS_LOGS>
-3.80

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
16.487590198249116

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.529383925989997

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0025121776628074

> <JCHEM_POLAR_SURFACE_AREA>
155.02999999999997

> <JCHEM_REFRACTIVITY>
131.26069999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.74e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,3R,4S,5S,7S,9R,10R,11R,14S)-3,5,10-tris(acetyloxy)-7-hydroxy-4,14,16,16-tetramethyl-8-methylidene-13-oxo-15-oxatetracyclo[9.4.1.0^{1,14}.0^{4,9}]hexadecan-2-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       2.222   4.265   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       0.876   5.012   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.610   5.054   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.048   4.331   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.464   3.051   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.651   1.855   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.286   2.670   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.746   2.644   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.276   1.126   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       4.671   0.600   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.227   0.334   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.479   1.275   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.660   2.804   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.645   4.072   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       7.421   5.402   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       6.658   6.740   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       5.118   6.747   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       7.434   8.070   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.075   3.413   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.255   4.942   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      10.309   2.492   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      10.128   0.962   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.714   0.354   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       8.533  -1.175   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       9.767  -2.096   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      11.182  -1.488   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       9.587  -3.626   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      11.724   3.100   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       7.482  -0.265   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       6.590  -1.163   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       5.475  -2.225   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       5.837  -3.722   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       3.997  -1.791   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       3.894  -0.729   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       2.354  -0.721   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       1.577  -2.051   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0       1.591   0.616   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       5.991   2.858   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       5.423   1.847   0.000  0.00  0.00           C+0
CONECT    1    2    3    7                                                  
CONECT    2    1                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5   14                                                  
CONECT    5    4    6   38   39                                             
CONECT    6    5    7    9   10                                             
CONECT    7    6    1    8    9                                             
CONECT    8    7                                                            
CONECT    9    7    6                                                       
CONECT   10    6   11   34                                                  
CONECT   11   10   12   30                                                  
CONECT   12   11   13   23   29                                             
CONECT   13   12   14   19                                                  
CONECT   14   13    4   15                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
CONECT   19   13   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   28                                                  
CONECT   22   21   23                                                       
CONECT   23   22   12   24                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28   21                                                            
CONECT   29   12                                                            
CONECT   30   11   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31                                                            
CONECT   34   10   35                                                       
CONECT   35   34   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35                                                            
CONECT   38    5                                                            
CONECT   39    5                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   84    0
END

View in JSmol

Synonyms

Value	Source
(11R,12S)-2a,7b,9a,10b-Tetraacetoxy-5a-hydroxy-11,12-epoxytax-4(20)-en-13-one	Generator
(11R,12S)-2Α,7β,9α,10β-tetraacetoxy-5α-hydroxy-11,12-epoxytax-4(20)-en-13-one	Generator

Chemical Formula

C₂₈H₃₈O₁₁

Average Mass

550.6010 Da

Monoisotopic Mass

550.24141 Da

IUPAC Name

(1R,2S,3R,4S,5S,7S,9R,10R,11R,14S)-3,5,10-tris(acetyloxy)-7-hydroxy-4,14,16,16-tetramethyl-8-methylidene-13-oxo-15-oxatetracyclo[9.4.1.0^{1,14}.0^{4,9}]hexadecan-2-yl acetate

Traditional Name

(1R,2S,3R,4S,5S,7S,9R,10R,11R,14S)-3,5,10-tris(acetyloxy)-7-hydroxy-4,14,16,16-tetramethyl-8-methylidene-13-oxo-15-oxatetracyclo[9.4.1.0^{1,14}.0^{4,9}]hexadecan-2-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@H]1C[C@H](O)C(=C)[C@H]2[C@H](OC(C)=O)[C@@H]3CC(=O)[C@@]4(C)O[C@@]4([C@@H](OC(C)=O)[C@H](OC(C)=O)[C@]12C)C3(C)C

InChI Identifier

InChI=1S/C28H38O11/c1-12-18(33)11-20(35-13(2)29)26(8)21(12)22(36-14(3)30)17-10-19(34)27(9)28(39-27,25(17,6)7)24(38-16(5)32)23(26)37-15(4)31/h17-18,20-24,33H,1,10-11H2,2-9H3/t17-,18-,20-,21-,22+,23-,24-,26+,27+,28-/m0/s1

InChI Key

OYGYAJRTYGLJDV-GMZLKGLPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Taxus canadensis	LOTUS Database	35616633
Taxus cuspidata	LOTUS Database	35616633
Taxus wallichiana	LOTUS Database	35616633
Taxus wallichiana var. yunnanensis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tetracarboxylic acids and derivatives. These are carboxylic acids containing exactly four carboxyl groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Tetracarboxylic acids and derivatives

Direct Parent

Tetracarboxylic acids and derivatives

Alternative Parents

Substituents

Tetracarboxylic acid or derivatives
Oxepane
Cyclic alcohol
Carboxylic acid ester
Ketone
Secondary alcohol
Dialkyl ether
Oxirane
Ether
Oxacycle
Organoheterocyclic compound
Alcohol
Carbonyl group
Hydrocarbon derivative
Organooxygen compound
Organic oxygen compound
Organic oxide
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.04	ALOGPS
logP	0.64	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	14.53	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	155.03 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	131.26 m³·mol⁻¹	ChemAxon
Polarizability	54.7 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4475482

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5316422

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Decinnamoyltaxinine B 11,12-epoxide (NP0082560)

MOL for NP0082560 (Decinnamoyltaxinine B 11,12-epoxide)

3D MOL for NP0082560 (Decinnamoyltaxinine B 11,12-epoxide)

3D SDF for NP0082560 (Decinnamoyltaxinine B 11,12-epoxide)

3D-SDF for NP0082560 (Decinnamoyltaxinine B 11,12-epoxide)

PDB for NP0082560 (Decinnamoyltaxinine B 11,12-epoxide)

3D PDB for NP0082560 (Decinnamoyltaxinine B 11,12-epoxide)

SMILES for NP0082560 (Decinnamoyltaxinine B 11,12-epoxide)

INCHI for NP0082560 (Decinnamoyltaxinine B 11,12-epoxide)

Structure for NP0082560 (Decinnamoyltaxinine B 11,12-epoxide)

3D Structure for NP0082560 (Decinnamoyltaxinine B 11,12-epoxide)