NP-MRD: Showing NP-Card for (-)-Gleditsioside D (NP0082329)

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Record Information

Version

2.0

Created at

2022-04-29 03:22:07 UTC

Updated at

2022-04-29 03:22:07 UTC

NP-MRD ID

NP0082329

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Gleditsioside D

Description

(2S,3R,4S,5R,6R)-3-{[(2S,3R,4R,5R,6S)-5-{[(2S,3R,4S,5R)-3,5-dihydroxy-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-4-hydroxy-6-methyl-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-4,5-dihydroxy-6-({[(2E,6S)-6-hydroxy-2,6-dimethylocta-2,7-dienoyl]oxy}methyl)oxan-2-yl (4aR,5R,6aS,6bR,8aR,10S,12aR,12bR,14bS)-10-{[(2R,3R,4S,5R,6R)-6-({[(2R,3S,4R,5R)-4,5-dihydroxy-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-5-hydroxy-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylate belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton. (-)-Gleditsioside D is found in Gleditsia sinensis . Based on a literature review very few articles have been published on (2S,3R,4S,5R,6R)-3-{[(2S,3R,4R,5R,6S)-5-{[(2S,3R,4S,5R)-3,5-dihydroxy-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-4-hydroxy-6-methyl-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-4,5-dihydroxy-6-({[(2E,6S)-6-hydroxy-2,6-dimethylocta-2,7-dienoyl]oxy}methyl)oxan-2-yl (4aR,5R,6aS,6bR,8aR,10S,12aR,12bR,14bS)-10-{[(2R,3R,4S,5R,6R)-6-({[(2R,3S,4R,5R)-4,5-dihydroxy-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-5-hydroxy-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292205222D          

125137  0  0  1  0            999 V2000
    5.2520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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    6.0770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.7766   -0.7392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.0145    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.3770    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.2020    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652304292205222D          

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    5.2520    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7507    2.6619    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9020    2.5559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.4895    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9020    3.9849    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.7270    3.9849    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.1395    3.2704    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.7270    2.5559    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.1395    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9645    1.8414    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.3770    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.2020    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.6145    1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.2020    2.5559    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.3770    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6145    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4395    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8520    2.5559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.4395    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8520    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6770    3.9849    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   13.0895    3.2704    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.6770    2.5559    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.0895    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.9145    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3270    3.9849    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   13.9145    4.6993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3270    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1520    5.4138    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   15.5645    4.6993    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.1520    3.9849    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.5645    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.3895    4.6993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.5645    6.1283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.0895    4.6993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6145    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9645    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3770   -0.3020    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.2020   -0.3020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6145   -1.0164    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.2020   -1.7309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.3770   -1.7309    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.9645   -1.0164    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.1395   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9645   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6145   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4395   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8520   -1.7309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9645    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1395    4.6993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    4.6993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9020    5.4138    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    6.1283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    6.4895    7.5572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9020    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    8.9862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9020    9.7006    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.3145   10.4151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1395   10.4151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1875   10.1131    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6164    9.2881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7270    6.8427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
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 15 16  1  0  0  0  0
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120124  1  1  0  0  0
116125  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0082329

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O)[C@@H](COC(=O)C(\C)=C\CC[C@](C)(O)C=C)O[C@H]2OC(=O)[C@]23CCC(C)(C)C[C@H]2C2=CC[C@@H]4[C@@]5(C)CC[C@H](O[C@@H]6O[C@H](CO[C@H]7OC[C@@H](O)[C@@H](O)[C@@H]7O[C@@H]7OC[C@@H](O)[C@H](O)[C@H]7O)[C@H](O)[C@H](O)[C@H]6O)C(C)(C)[C@@H]5CC[C@@]4(C)[C@]2(C)C[C@H]3O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O[C@@H]1OC[C@@H](O)[C@H](O[C@@H]2OC[C@@H](O)[C@H](O)[C@H]2O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C84H134O41/c1-12-80(8,108)19-13-14-33(2)68(106)109-31-42-53(96)56(99)66(124-75-67(123-73-60(103)54(97)51(94)41(26-85)116-73)61(104)63(34(3)115-75)120-71-62(105)64(40(89)30-112-71)121-69-57(100)48(91)37(86)27-110-69)76(118-42)125-77(107)84-23-22-78(4,5)24-36(84)35-15-16-45-81(9)20-18-47(79(6,7)44(81)17-21-82(45,10)83(35,11)25-46(84)90)119-72-59(102)55(98)52(95)43(117-72)32-114-74-65(50(93)39(88)29-113-74)122-70-58(101)49(92)38(87)28-111-70/h12,14-15,34,36-67,69-76,85-105,108H,1,13,16-32H2,2-11H3/b33-14+/t34-,36-,37+,38+,39+,40+,41+,42+,43+,44-,45+,46+,47-,48-,49-,50+,51+,52-,53-,54-,55-,56-,57+,58+,59+,60+,61+,62+,63-,64-,65-,66+,67+,69-,70-,71-,72-,73-,74+,75-,76-,80+,81-,82+,83+,84+/m0/s1

> <INCHI_KEY>
AEPZIZXGVQDNGR-XIJUDTHZSA-N

> <FORMULA>
C84H134O41

> <MOLECULAR_WEIGHT>
1799.955

> <EXACT_MASS>
1798.840053735

> <JCHEM_ACCEPTOR_COUNT>
39

> <JCHEM_ATOM_COUNT>
259

> <JCHEM_AVERAGE_POLARIZABILITY>
185.9735110717886

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
22

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,5R,6R)-3-{[(2S,3R,4R,5R,6S)-5-{[(2S,3R,4S,5R)-3,5-dihydroxy-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-4-hydroxy-6-methyl-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-4,5-dihydroxy-6-({[(2E,6S)-6-hydroxy-2,6-dimethylocta-2,7-dienoyl]oxy}methyl)oxan-2-yl (4aR,5R,6aS,6bR,8aR,10S,12aR,12bR,14bS)-10-{[(2R,3R,4S,5R,6R)-6-({[(2R,3S,4R,5R)-4,5-dihydroxy-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-5-hydroxy-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylate

> <ALOGPS_LOGP>
0.67

> <JCHEM_LOGP>
-2.9946560023333317

> <ALOGPS_LOGS>
-2.50

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
13

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.986595334451417

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.611389175320568

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6795685621561445

> <JCHEM_POLAR_SURFACE_AREA>
636.1100000000004

> <JCHEM_REFRACTIVITY>
417.5021999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
27

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.75e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5R,6R)-3-{[(2S,3R,4R,5R,6S)-5-{[(2S,3R,4S,5R)-3,5-dihydroxy-4-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-4-hydroxy-6-methyl-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-4,5-dihydroxy-6-({[(2E,6S)-6-hydroxy-2,6-dimethylocta-2,7-dienoyl]oxy}methyl)oxan-2-yl (4aR,5R,6aS,6bR,8aR,10S,12aR,12bR,14bS)-10-{[(2R,3R,4S,5R,6R)-6-({[(2R,3S,4R,5R)-4,5-dihydroxy-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-5-hydroxy-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,7,8,8a,10,11,12,12b,13,14b-tetradecahydropicene-4a-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       9.804  -0.564   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.034   0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.804   2.104   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.344   2.104   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.114   0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.344  -0.564   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      11.397  -2.103   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      12.650  -1.380   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.034   3.437   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.494   3.437   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.414   3.437   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.874   3.437   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.742   2.920   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.510   3.643   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -1.746   0.770   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -2.516  -0.564   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -1.746  -1.897   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -2.516  -3.231   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -4.056  -3.231   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -4.826  -1.897   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -4.056  -0.564   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -4.826   0.770   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      -6.366  -1.897   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0      -4.826  -4.565   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      -1.746  -4.565   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      -2.516  -5.898   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      -1.746  -7.232   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -2.516  -8.566   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      -1.746  -9.899   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      -0.206  -9.899   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       0.564  -8.566   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      -0.206  -7.232   0.000  0.00  0.00           O+0
HETATM   45  O   UNK     0       0.564 -11.233   0.000  0.00  0.00           O+0
HETATM   46  O   UNK     0      -2.516 -11.233   0.000  0.00  0.00           O+0
HETATM   47  O   UNK     0      -4.056  -8.566   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      -4.826  -9.899   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      -6.366  -9.899   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      -7.136 -11.233   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      -6.366 -12.567   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      -4.826 -12.567   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      -4.056 -11.233   0.000  0.00  0.00           O+0
HETATM   54  O   UNK     0      -7.136 -13.900   0.000  0.00  0.00           O+0
HETATM   55  O   UNK     0      -8.676 -11.233   0.000  0.00  0.00           O+0
HETATM   56  O   UNK     0      -7.136  -8.566   0.000  0.00  0.00           O+0
HETATM   57  C   UNK     0       3.644  -0.564   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0       6.885   3.635   0.000  0.00  0.00           C+0
HETATM   60  O   UNK     0       9.804   4.771   0.000  0.00  0.00           O+0
HETATM   61  C   UNK     0      10.574   3.437   0.000  0.00  0.00           C+0
HETATM   62  O   UNK     0      10.735   4.969   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0      12.114   3.437   0.000  0.00  0.00           O+0
HETATM   64  C   UNK     0      12.884   4.771   0.000  0.00  0.00           C+0
HETATM   65  O   UNK     0      12.114   6.105   0.000  0.00  0.00           O+0
HETATM   66  C   UNK     0      12.884   7.438   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0      14.424   7.438   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0      15.194   6.105   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0      14.424   4.771   0.000  0.00  0.00           C+0
HETATM   70  O   UNK     0      15.194   3.437   0.000  0.00  0.00           O+0
HETATM   71  C   UNK     0      16.734   3.437   0.000  0.00  0.00           C+0
HETATM   72  C   UNK     0      17.504   2.104   0.000  0.00  0.00           C+0
HETATM   73  C   UNK     0      19.044   2.104   0.000  0.00  0.00           C+0
HETATM   74  C   UNK     0      19.814   3.437   0.000  0.00  0.00           C+0
HETATM   75  C   UNK     0      19.044   4.771   0.000  0.00  0.00           C+0
HETATM   76  O   UNK     0      17.504   4.771   0.000  0.00  0.00           O+0
HETATM   77  C   UNK     0      19.814   6.105   0.000  0.00  0.00           C+0
HETATM   78  O   UNK     0      21.354   3.437   0.000  0.00  0.00           O+0
HETATM   79  C   UNK     0      22.124   4.771   0.000  0.00  0.00           C+0
HETATM   80  O   UNK     0      21.354   6.105   0.000  0.00  0.00           O+0
HETATM   81  C   UNK     0      22.124   7.438   0.000  0.00  0.00           C+0
HETATM   82  C   UNK     0      23.664   7.438   0.000  0.00  0.00           C+0
HETATM   83  C   UNK     0      24.434   6.105   0.000  0.00  0.00           C+0
HETATM   84  C   UNK     0      23.664   4.771   0.000  0.00  0.00           C+0
HETATM   85  O   UNK     0      24.434   3.437   0.000  0.00  0.00           O+0
HETATM   86  O   UNK     0      25.974   6.105   0.000  0.00  0.00           O+0
HETATM   87  C   UNK     0      26.744   7.438   0.000  0.00  0.00           C+0
HETATM   88  O   UNK     0      25.974   8.772   0.000  0.00  0.00           O+0
HETATM   89  C   UNK     0      26.744  10.106   0.000  0.00  0.00           C+0
HETATM   90  C   UNK     0      28.284  10.106   0.000  0.00  0.00           C+0
HETATM   91  C   UNK     0      29.054   8.772   0.000  0.00  0.00           C+0
HETATM   92  C   UNK     0      28.284   7.438   0.000  0.00  0.00           C+0
HETATM   93  O   UNK     0      29.054   6.105   0.000  0.00  0.00           O+0
HETATM   94  O   UNK     0      30.594   8.772   0.000  0.00  0.00           O+0
HETATM   95  O   UNK     0      29.054  11.439   0.000  0.00  0.00           O+0
HETATM   96  O   UNK     0      24.434   8.772   0.000  0.00  0.00           O+0
HETATM   97  O   UNK     0      19.814   0.770   0.000  0.00  0.00           O+0
HETATM   98  O   UNK     0      16.734   0.770   0.000  0.00  0.00           O+0
HETATM   99  C   UNK     0      17.504  -0.564   0.000  0.00  0.00           C+0
HETATM  100  O   UNK     0      19.044  -0.564   0.000  0.00  0.00           O+0
HETATM  101  C   UNK     0      19.814  -1.897   0.000  0.00  0.00           C+0
HETATM  102  C   UNK     0      19.044  -3.231   0.000  0.00  0.00           C+0
HETATM  103  C   UNK     0      17.504  -3.231   0.000  0.00  0.00           C+0
HETATM  104  C   UNK     0      16.734  -1.897   0.000  0.00  0.00           C+0
HETATM  105  O   UNK     0      15.194  -1.897   0.000  0.00  0.00           O+0
HETATM  106  O   UNK     0      16.734  -4.565   0.000  0.00  0.00           O+0
HETATM  107  O   UNK     0      19.814  -4.565   0.000  0.00  0.00           O+0
HETATM  108  C   UNK     0      21.354  -1.897   0.000  0.00  0.00           C+0
HETATM  109  O   UNK     0      22.124  -3.231   0.000  0.00  0.00           O+0
HETATM  110  O   UNK     0      16.734   6.105   0.000  0.00  0.00           O+0
HETATM  111  O   UNK     0      15.194   8.772   0.000  0.00  0.00           O+0
HETATM  112  C   UNK     0      12.114   8.772   0.000  0.00  0.00           C+0
HETATM  113  O   UNK     0      12.884  10.106   0.000  0.00  0.00           O+0
HETATM  114  C   UNK     0      12.114  11.439   0.000  0.00  0.00           C+0
HETATM  115  O   UNK     0      10.574  11.439   0.000  0.00  0.00           O+0
HETATM  116  C   UNK     0      12.884  12.773   0.000  0.00  0.00           C+0
HETATM  117  C   UNK     0      12.114  14.107   0.000  0.00  0.00           C+0
HETATM  118  C   UNK     0      12.884  15.440   0.000  0.00  0.00           C+0
HETATM  119  C   UNK     0      12.114  16.774   0.000  0.00  0.00           C+0
HETATM  120  C   UNK     0      12.884  18.108   0.000  0.00  0.00           C+0
HETATM  121  C   UNK     0      13.654  19.442   0.000  0.00  0.00           C+0
HETATM  122  C   UNK     0      15.194  19.442   0.000  0.00  0.00           C+0
HETATM  123  O   UNK     0      11.550  18.878   0.000  0.00  0.00           O+0
HETATM  124  C   UNK     0      14.217  17.338   0.000  0.00  0.00           C+0
HETATM  125  C   UNK     0      14.424  12.773   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   12                                                  
CONECT    3    2    4    9   61                                             
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    1    7    8                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    3   10   60                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   16   59                                             
CONECT   12   11    2   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   20                                                  
CONECT   16   15   11   17   58                                             
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   24                                                  
CONECT   20   19   15   21   57                                             
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   27                                                  
CONECT   24   23   19   25   26                                             
CONECT   25   24                                                            
CONECT   26   24                                                            
CONECT   27   23   28                                                       
CONECT   28   27   29   33                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31   37                                                  
CONECT   31   30   32   36                                                  
CONECT   32   31   33   35                                                  
CONECT   33   32   28   34                                                  
CONECT   34   33                                                            
CONECT   35   32                                                            
CONECT   36   31                                                            
CONECT   37   30   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40   44                                                  
CONECT   40   39   41   47                                                  
CONECT   41   40   42   46                                                  
CONECT   42   41   43   45                                                  
CONECT   43   42   44                                                       
CONECT   44   43   39                                                       
CONECT   45   42                                                            
CONECT   46   41                                                            
CONECT   47   40   48                                                       
CONECT   48   47   49   53                                                  
CONECT   49   48   50   56                                                  
CONECT   50   49   51   55                                                  
CONECT   51   50   52   54                                                  
CONECT   52   51   53                                                       
CONECT   53   52   48                                                       
CONECT   54   51                                                            
CONECT   55   50                                                            
CONECT   56   49                                                            
CONECT   57   20                                                            
CONECT   58   16                                                            
CONECT   59   11                                                            
CONECT   60    9                                                            
CONECT   61    3   62   63                                                  
CONECT   62   61                                                            
CONECT   63   61   64                                                       
CONECT   64   63   65   69                                                  
CONECT   65   64   66                                                       
CONECT   66   65   67  112                                                  
CONECT   67   66   68  111                                                  
CONECT   68   67   69  110                                                  
CONECT   69   68   64   70                                                  
CONECT   70   69   71                                                       
CONECT   71   70   72   76                                                  
CONECT   72   71   73   98                                                  
CONECT   73   72   74   97                                                  
CONECT   74   73   75   78                                                  
CONECT   75   74   76   77                                                  
CONECT   76   75   71                                                       
CONECT   77   75                                                            
CONECT   78   74   79                                                       
CONECT   79   78   80   84                                                  
CONECT   80   79   81                                                       
CONECT   81   80   82                                                       
CONECT   82   81   83   96                                                  
CONECT   83   82   84   86                                                  
CONECT   84   83   79   85                                                  
CONECT   85   84                                                            
CONECT   86   83   87                                                       
CONECT   87   86   88   92                                                  
CONECT   88   87   89                                                       
CONECT   89   88   90                                                       
CONECT   90   89   91   95                                                  
CONECT   91   90   92   94                                                  
CONECT   92   91   87   93                                                  
CONECT   93   92                                                            
CONECT   94   91                                                            
CONECT   95   90                                                            
CONECT   96   82                                                            
CONECT   97   73                                                            
CONECT   98   72   99                                                       
CONECT   99   98  100  104                                                  
CONECT  100   99  101                                                       
CONECT  101  100  102  108                                                  
CONECT  102  101  103  107                                                  
CONECT  103  102  104  106                                                  
CONECT  104  103   99  105                                                  
CONECT  105  104                                                            
CONECT  106  103                                                            
CONECT  107  102                                                            
CONECT  108  101  109                                                       
CONECT  109  108                                                            
CONECT  110   68                                                            
CONECT  111   67                                                            
CONECT  112   66  113                                                       
CONECT  113  112  114                                                       
CONECT  114  113  115  116                                                  
CONECT  115  114                                                            
CONECT  116  114  117  125                                                  
CONECT  117  116  118                                                       
CONECT  118  117  119                                                       
CONECT  119  118  120                                                       
CONECT  120  119  121  123  124                                             
CONECT  121  120  122                                                       
CONECT  122  121                                                            
CONECT  123  120                                                            
CONECT  124  120                                                            
CONECT  125  116                                                            
MASTER        0    0    0    0    0    0    0    0  125    0  274    0
END

View in JSmol

Synonyms

Value

Source

Generator

Chemical Formula

C₈₄H₁₃₄O₄₁

Average Mass

1799.9550 Da

Monoisotopic Mass

1798.84005 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O)[C@@H](COC(=O)C(\C)=C\CC[C@](C)(O)C=C)O[C@H]2OC(=O)[C@]23CCC(C)(C)C[C@H]2C2=CC[C@@H]4[C@@]5(C)CC[C@H](O[C@@H]6O[C@H](CO[C@H]7OC[C@@H](O)[C@@H](O)[C@@H]7O[C@@H]7OC[C@@H](O)[C@H](O)[C@H]7O)[C@H](O)[C@H](O)[C@H]6O)C(C)(C)[C@@H]5CC[C@@]4(C)[C@]2(C)C[C@H]3O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O[C@@H]1OC[C@@H](O)[C@H](O[C@@H]2OC[C@@H](O)[C@H](O)[C@H]2O)[C@H]1O

InChI Identifier

InChI=1S/C84H134O41/c1-12-80(8,108)19-13-14-33(2)68(106)109-31-42-53(96)56(99)66(124-75-67(123-73-60(103)54(97)51(94)41(26-85)116-73)61(104)63(34(3)115-75)120-71-62(105)64(40(89)30-112-71)121-69-57(100)48(91)37(86)27-110-69)76(118-42)125-77(107)84-23-22-78(4,5)24-36(84)35-15-16-45-81(9)20-18-47(79(6,7)44(81)17-21-82(45,10)83(35,11)25-46(84)90)119-72-59(102)55(98)52(95)43(117-72)32-114-74-65(50(93)39(88)29-113-74)122-70-58(101)49(92)38(87)28-111-70/h12,14-15,34,36-67,69-76,85-105,108H,1,13,16-32H2,2-11H3/b33-14+/t34-,36-,37+,38+,39+,40+,41+,42+,43+,44-,45+,46+,47-,48-,49-,50+,51+,52-,53-,54-,55-,56-,57+,58+,59+,60+,61+,62+,63-,64-,65-,66+,67+,69-,70-,71-,72-,73-,74+,75-,76-,80+,81-,82+,83+,84+/m0/s1

InChI Key

AEPZIZXGVQDNGR-XIJUDTHZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Gleditsia sinensis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Triterpene saponins

Alternative Parents

Substituents

Triterpene saponin
Triterpenoid
Oligosaccharide
Saccharolipid
Fatty acyl glycoside
O-glycosyl compound
Glycosyl compound
Fatty acid ester
Beta-hydroxy acid
Fatty acyl
Oxane
Hydroxy acid
Dicarboxylic acid or derivatives
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.67	ALOGPS
logP	-3	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	11.61	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	39	ChemAxon
Hydrogen Donor Count	22	ChemAxon
Polar Surface Area	636.11 Å²	ChemAxon
Rotatable Bond Count	27	ChemAxon
Refractivity	417.5 m³·mol⁻¹	ChemAxon
Polarizability	185.97 Å³	ChemAxon
Number of Rings	13	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162826519

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for (-)-Gleditsioside D (NP0082329)

MOL for NP0082329 ((-)-Gleditsioside D)

3D MOL for NP0082329 ((-)-Gleditsioside D)

3D SDF for NP0082329 ((-)-Gleditsioside D)

3D-SDF for NP0082329 ((-)-Gleditsioside D)

PDB for NP0082329 ((-)-Gleditsioside D)

3D PDB for NP0082329 ((-)-Gleditsioside D)

SMILES for NP0082329 ((-)-Gleditsioside D)

INCHI for NP0082329 ((-)-Gleditsioside D)

Structure for NP0082329 ((-)-Gleditsioside D)

3D Structure for NP0082329 ((-)-Gleditsioside D)