NP-MRD: Showing NP-Card for 8-Acetylcondelphine (NP0082273)

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Record Information

Version

2.0

Created at

2022-04-29 03:18:46 UTC

Updated at

2022-04-29 03:18:46 UTC

NP-MRD ID

NP0082273

Secondary Accession Numbers

None

Natural Product Identification

Common Name

8-Acetylcondelphine

Description

(1R,2R,3R,4R,5R,6R,8S,9R,10S,13R,16S,17S)-8-(acetyloxy)-11-ethyl-16-hydroxy-6-methoxy-13-(methoxymethyl)-11-azahexacyclo[7.7.2.1²,⁵.0¹,¹⁰.0³,⁸.0¹³,¹⁷]Nonadecan-4-yl acetate belongs to the class of organic compounds known as aconitane-type diterpenoid alkaloids. These are alkaloid diterpenoids with a structure based on the hexacyclic aconitane skeleton. These compounds have no oxygen functionality at the C7 atom. 8-Acetylcondelphine is found in Delphinium pyrimadale. Based on a literature review very few articles have been published on (1R,2R,3R,4R,5R,6R,8S,9R,10S,13R,16S,17S)-8-(acetyloxy)-11-ethyl-16-hydroxy-6-methoxy-13-(methoxymethyl)-11-azahexacyclo[7.7.2.1²,⁵.0¹,¹⁰.0³,⁸.0¹³,¹⁷]Nonadecan-4-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292205182D          

 35 40  0  0  1  0            999 V2000
    1.3480   -0.0337    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1037    0.7543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.8126   -0.2766    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8678   -0.6751    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7699   -1.6440    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2504   -1.2684    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0451   -1.8221    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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  9 10  1  1  0  0  0
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  5 14  1  0  0  0  0
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 11 16  1  0  0  0  0
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  8 27  1  0  0  0  0
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  7 30  1  0  0  0  0
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 30 32  1  1  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 27 35  1  6  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652304292205182D          

 35 40  0  0  1  0            999 V2000
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  7  6  1  1  0  0  0
  8  7  1  1  0  0  0
  4  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
 11 10  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  5 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15  9  1  1  0  0  0
 15 16  1  0  0  0  0
 11 16  1  0  0  0  0
 16 17  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 14 21  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 12 25  1  1  0  0  0
 25 26  1  0  0  0  0
  8 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
  7 30  1  0  0  0  0
 30 31  1  0  0  0  0
  1 31  1  0  0  0  0
 30 32  1  1  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 27 35  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0082273

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCN1C[C@@]2(COC)CC[C@H](O)[C@]34[C@@H]5C[C@H]6[C@@H](OC(C)=O)[C@@H]5[C@@](C[C@H]6OC)(OC(C)=O)[C@H](C[C@@H]23)[C@H]14

> <INCHI_IDENTIFIER>
InChI=1S/C27H41NO7/c1-6-28-12-25(13-32-4)8-7-21(31)27-17-9-16-19(33-5)11-26(35-15(3)30,18(24(27)28)10-20(25)27)22(17)23(16)34-14(2)29/h16-24,31H,6-13H2,1-5H3/t16-,17-,18-,19-,20+,21+,22-,23-,24+,25-,26+,27+/m1/s1

> <INCHI_KEY>
DEDNAUCJRZZDNT-ZUYMABGLSA-N

> <FORMULA>
C27H41NO7

> <MOLECULAR_WEIGHT>
491.625

> <EXACT_MASS>
491.288302664

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
53.50339282310098

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2R,3R,4R,5R,6R,8S,9R,10S,13R,16S,17S)-4-(acetyloxy)-11-ethyl-16-hydroxy-6-methoxy-13-(methoxymethyl)-11-azahexacyclo[7.7.2.1^{2,5}.0^{1,10}.0^{3,8}.0^{13,17}]nonadecan-8-yl acetate

> <ALOGPS_LOGP>
1.64

> <JCHEM_LOGP>
-0.03097459066666812

> <ALOGPS_LOGS>
-3.21

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.635534624698032

> <JCHEM_PKA_STRONGEST_BASIC>
10.04943077481366

> <JCHEM_POLAR_SURFACE_AREA>
94.53

> <JCHEM_REFRACTIVITY>
126.58919999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.04e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,3R,4R,5R,6R,8S,9R,10S,13R,16S,17S)-4-(acetyloxy)-11-ethyl-16-hydroxy-6-methoxy-13-(methoxymethyl)-11-azahexacyclo[7.7.2.1^{2,5}.0^{1,10}.0^{3,8}.0^{13,17}]nonadecan-8-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  N   UNK     0       2.516  -0.063   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       2.060   1.408   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.558   1.749   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.045  -0.517   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.250  -0.516   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.487  -1.260   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.304  -3.069   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.201  -2.368   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.684  -3.401   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.992  -4.611   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.755  -3.620   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.518  -2.146   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.525  -0.885   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.915  -1.033   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.792  -2.556   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.823  -4.031   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       7.408  -5.514   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       8.485  -6.615   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.070  -8.098   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       9.977  -6.233   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       7.076   0.499   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       8.482   1.125   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       8.643   2.657   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       9.729   0.220   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      11.051  -2.000   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      11.943  -3.255   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.561  -1.519   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.906  -2.649   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.558  -1.582   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       1.666  -3.084   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.515  -1.300   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.208  -4.525   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       1.232  -5.715   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       1.774  -7.157   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       1.997  -0.086   0.000  0.00  0.00           O+0
CONECT    1    2    4   31                                                  
CONECT    2    1    3                                                       
CONECT    3    2                                                            
CONECT    4    1    5    8                                                  
CONECT    5    4    6   14                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   30                                                  
CONECT    8    7    4    9   27                                             
CONECT    9    8   10   15                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   16                                                  
CONECT   12   11   13   25                                                  
CONECT   13   12   14                                                       
CONECT   14   13    5   15   21                                             
CONECT   15   14    9   16                                                  
CONECT   16   15   11   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   14   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   12   26                                                       
CONECT   26   25                                                            
CONECT   27    8   28   35                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29    7   31   32                                             
CONECT   31   30    1                                                       
CONECT   32   30   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33                                                            
CONECT   35   27                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   80    0
END

View in JSmol

Synonyms

Value	Source
(1R,2R,3R,4R,5R,6R,8S,9R,10S,13R,16S,17S)-8-(Acetyloxy)-11-ethyl-16-hydroxy-6-methoxy-13-(methoxymethyl)-11-azahexacyclo[7.7.2.1,.0,.0,.0,]nonadecan-4-yl acetic acid	Generator

Chemical Formula

C₂₇H₄₁NO₇

Average Mass

491.6250 Da

Monoisotopic Mass

491.28830 Da

IUPAC Name

(1R,2R,3R,4R,5R,6R,8S,9R,10S,13R,16S,17S)-4-(acetyloxy)-11-ethyl-16-hydroxy-6-methoxy-13-(methoxymethyl)-11-azahexacyclo[7.7.2.1^{2,5}.0^{1,10}.0^{3,8}.0^{13,17}]nonadecan-8-yl acetate

Traditional Name

(1R,2R,3R,4R,5R,6R,8S,9R,10S,13R,16S,17S)-4-(acetyloxy)-11-ethyl-16-hydroxy-6-methoxy-13-(methoxymethyl)-11-azahexacyclo[7.7.2.1^{2,5}.0^{1,10}.0^{3,8}.0^{13,17}]nonadecan-8-yl acetate

CAS Registry Number

Not Available

SMILES

CCN1C[C@@]2(COC)CC[C@H](O)[C@]34[C@@H]5C[C@H]6[C@@H](OC(C)=O)[C@@H]5[C@@](C[C@H]6OC)(OC(C)=O)[C@H](C[C@@H]23)[C@H]14

InChI Identifier

InChI=1S/C27H41NO7/c1-6-28-12-25(13-32-4)8-7-21(31)27-17-9-16-19(33-5)11-26(35-15(3)30,18(24(27)28)10-20(25)27)22(17)23(16)34-14(2)29/h16-24,31H,6-13H2,1-5H3/t16-,17-,18-,19-,20+,21+,22-,23-,24+,25-,26+,27+/m1/s1

InChI Key

DEDNAUCJRZZDNT-ZUYMABGLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Delphinium pyrimadale	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aconitane-type diterpenoid alkaloids. These are alkaloid diterpenoids with a structure based on the hexacyclic aconitane skeleton. These compounds have no oxygen functionality at the C7 atom.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Aconitane-type diterpenoid alkaloids

Alternative Parents

Substituents

Aconitane-type diterpenoid alkaloid
Quinolidine
Alkaloid or derivatives
Azepane
Piperidine
Dicarboxylic acid or derivatives
Cyclic alcohol
Tertiary aliphatic amine
Tertiary amine
Secondary alcohol
Carboxylic acid ester
Amino acid or derivatives
Azacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Amine
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.64	ALOGPS
logP	-0.031	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Acidic)	14.64	ChemAxon
pKa (Strongest Basic)	10.05	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	94.53 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	126.59 m³·mol⁻¹	ChemAxon
Polarizability	53.5 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163103811

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 8-Acetylcondelphine (NP0082273)

MOL for NP0082273 (8-Acetylcondelphine)

3D MOL for NP0082273 (8-Acetylcondelphine)

3D SDF for NP0082273 (8-Acetylcondelphine)

3D-SDF for NP0082273 (8-Acetylcondelphine)

PDB for NP0082273 (8-Acetylcondelphine)

3D PDB for NP0082273 (8-Acetylcondelphine)

SMILES for NP0082273 (8-Acetylcondelphine)

INCHI for NP0082273 (8-Acetylcondelphine)

Structure for NP0082273 (8-Acetylcondelphine)

3D Structure for NP0082273 (8-Acetylcondelphine)