NP-MRD: Showing NP-Card for (-)-Nagelamide M (NP0082052)

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Record Information

Version

2.0

Created at

2022-04-29 03:06:21 UTC

Updated at

2022-04-29 03:06:21 UTC

NP-MRD ID

NP0082052

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Nagelamide M

Description

2-[(3AS,5S,6aS)-5-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-6a-hydroxy-2-imino-octahydropyrrolo[2,3-d]imidazol-4-yl]ethane-1-sulfonic acid belongs to the class of organic compounds known as 2-heteroaryl carboxamides. 2-Heteroaryl carboxamides are compounds containing a heteroaromatic ring that carries a carboxamide group. (-)-Nagelamide M is found in Agelas sp. Based on a literature review very few articles have been published on 2-[(3aS,5S,6aS)-5-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-6a-hydroxy-2-imino-octahydropyrrolo[2,3-d]imidazol-4-yl]ethane-1-sulfonic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292205062D          

 27 29  0  0  1  0            999 V2000
    0.7846   -1.0799    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0000   -1.3349    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4849   -0.6674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846   -0.2549    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5692   -0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0542   -0.6674    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5692   -1.3349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8792   -0.6674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2917   -1.3819    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1167   -1.3819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5292   -0.6674    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5292   -2.0964    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3496   -2.1826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5212   -2.9896    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8067   -3.4021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1936   -2.8501    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7205   -4.2226    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    6.2748   -3.3251    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    1.8242    0.7846    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2721    1.3977    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4652    1.2262    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3418    1.0547    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2937    2.0332    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6367    0.4192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3099   -0.6674    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846   -1.9049    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  4  1  1  0  0  0
  1  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  1  8  1  0  0  0  0
  7  9  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 13 17  1  0  0  0  0
 16 18  1  0  0  0  0
 15 19  1  0  0  0  0
  6 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  2  0  0  0  0
 22 25  1  0  0  0  0
  3 26  1  0  0  0  0
  1 27  1  6  0  0  0
M  END

     RDKit          3D

 45 47  0  0  0  0  0  0  0  0999 V2000
   -4.4721    3.2821    1.2089 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3177    2.3994    1.1500 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3149    1.1388    1.0831 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9953    0.6099    1.0412 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8361   -0.0165   -0.2700 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1638   -1.3850   -0.1574 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0437   -2.1698   -1.4301 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5040   -3.8637   -1.0467 S   0  0  2  0  0  6  0  0  0  0  0  0
   -1.6038   -4.4059    0.0425 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2854   -4.7162   -2.2599 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0675   -3.9384   -0.4742 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4047    0.2396   -0.6026 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4716   -0.6210    0.1734 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8663   -0.5162   -0.0489 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8051    0.4744    0.2195 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5340    1.5391    0.7846 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2270    0.2840   -0.1784 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7404   -0.8135   -0.8126 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0862   -0.6120   -1.0072 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2618   -1.8440   -1.8485 Br  0  0  0  0  0  0  0  0  0  0  0  0
    6.3628    0.6285   -0.4753 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1054    1.3954   -0.4859 Br  0  0  0  0  0  0  0  0  0  0  0  0
    5.2250    1.1399    0.0143 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3678    1.6988   -0.2550 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0796    1.7817    1.0866 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2240    1.7218    2.1664 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9990    2.8866    1.1620 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3713    2.9879    0.7783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4121    4.1958    1.6717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7940   -0.1348    1.8483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7031   -1.9443    0.6768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2701   -1.4166    0.0918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7967   -1.8332   -2.1879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0577   -2.1455   -1.9076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7505   -3.6734   -1.1218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2630    0.1052   -1.6792 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2126   -1.7249    0.0763 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3462   -0.3830    1.3032 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3367   -1.3961   -0.5436 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2235   -1.7001   -1.1239 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1561    2.0753    0.4752 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5188    2.2506   -0.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1128    2.2397   -0.9547 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6017    2.2928    2.9067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6667    3.8869    1.2159 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8 11  1  1
  8  9  2  0
  8 10  2  0
  5 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  1  0
 19 21  2  0
 21 22  1  0
 21 23  1  0
 12 24  1  0
 24 25  1  0
 25 26  1  1
 25 27  1  0
 27  2  1  0
 25  4  1  0
 23 17  1  0
  1 28  1  0
  1 29  1  0
  4 30  1  1
  6 31  1  0
  6 32  1  0
  7 33  1  0
  7 34  1  0
 11 35  1  0
 12 36  1  6
 13 37  1  0
 13 38  1  0
 14 39  1  0
 18 40  1  0
 23 41  1  0
 24 42  1  0
 24 43  1  0
 26 44  1  0
 27 45  1  0
M  END


  Mrv1652304292205062D          

 27 29  0  0  1  0            999 V2000
    0.7846   -1.0799    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0000   -1.3349    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4849   -0.6674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846   -0.2549    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5692   -0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0542   -0.6674    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5692   -1.3349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8792   -0.6674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2917   -1.3819    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1167   -1.3819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5292   -0.6674    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5292   -2.0964    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3496   -2.1826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5212   -2.9896    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8067   -3.4021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1936   -2.8501    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7205   -4.2226    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    6.2748   -3.3251    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    1.8242    0.7846    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2721    1.3977    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4652    1.2262    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3418    1.0547    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2937    2.0332    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6367    0.4192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3099   -0.6674    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846   -1.9049    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  4  1  1  0  0  0
  1  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  1  8  1  0  0  0  0
  7  9  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 13 17  1  0  0  0  0
 16 18  1  0  0  0  0
 15 19  1  0  0  0  0
  6 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  2  0  0  0  0
 22 25  1  0  0  0  0
  3 26  1  0  0  0  0
  1 27  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0082052

> <DATABASE_NAME>
NP-MRD

> <SMILES>
NC1=N[C@H]2N(CCS(O)(=O)=O)[C@H](CNC(=O)C3=CC(Br)=C(Br)N3)C[C@@]2(O)N1

> <INCHI_IDENTIFIER>
InChI=1S/C13H18Br2N6O5S/c14-7-3-8(18-9(7)15)10(22)17-5-6-4-13(23)11(19-12(16)20-13)21(6)1-2-27(24,25)26/h3,6,11,18,23H,1-2,4-5H2,(H,17,22)(H3,16,19,20)(H,24,25,26)/t6-,11-,13-/m0/s1

> <INCHI_KEY>
ZMEUCKKPACZQIQ-FOGGNADHSA-N

> <FORMULA>
C13H18Br2N6O5S

> <MOLECULAR_WEIGHT>
530.19

> <EXACT_MASS>
527.942615

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
42.67990625538495

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(3aR,5S,6aS)-2-amino-5-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-6a-hydroxy-1H,3aH,4H,5H,6H,6aH-pyrrolo[2,3-d]imidazol-4-yl]ethane-1-sulfonic acid

> <ALOGPS_LOGP>
-1.10

> <JCHEM_LOGP>
-0.7917541033964063

> <ALOGPS_LOGS>
-2.80

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.740755927485921

> <JCHEM_PKA_STRONGEST_ACIDIC>
-1.0712899225126584

> <JCHEM_PKA_STRONGEST_BASIC>
7.836888310734296

> <JCHEM_POLAR_SURFACE_AREA>
173.14

> <JCHEM_REFRACTIVITY>
101.60769999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.49e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(3aR,5S,6aS)-2-amino-5-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-6a-hydroxy-1H,3aH,5H,6H-pyrrolo[2,3-d]imidazol-4-yl]ethanesulfonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       1.465  -2.016   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0      -0.000  -2.492   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0      -0.905  -1.246   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0      -0.000  -0.000   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       1.465  -0.476   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       2.929  -0.000   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       3.834  -1.246   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.929  -2.492   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.374  -1.246   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       6.144  -2.580   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       7.684  -2.580   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       8.454  -1.246   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       8.454  -3.913   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.986  -4.074   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.306  -5.581   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.973  -6.351   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       7.828  -5.320   0.000  0.00  0.00           N+0
HETATM   18 Br   UNK     0       8.812  -7.882   0.000  0.00  0.00          Br+0
HETATM   19 Br   UNK     0      11.713  -6.207   0.000  0.00  0.00          Br+0
HETATM   20  C   UNK     0       3.405   1.465   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.375   2.609   0.000  0.00  0.00           C+0
HETATM   22  S   UNK     0       0.868   2.289   0.000  0.00  0.00           S+0
HETATM   23  O   UNK     0      -0.638   1.969   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       0.548   3.795   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       1.189   0.783   0.000  0.00  0.00           O+0
HETATM   26  N   UNK     0      -2.445  -1.246   0.000  0.00  0.00           N+0
HETATM   27  O   UNK     0       1.465  -3.556   0.000  0.00  0.00           O+0
CONECT    1    2    5    8   27                                             
CONECT    2    1    3                                                       
CONECT    3    2    4   26                                                  
CONECT    4    3    5                                                       
CONECT    5    4    1    6                                                  
CONECT    6    5    7   20                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7    1                                                       
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   17                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   19                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16   13                                                       
CONECT   18   16                                                            
CONECT   19   15                                                            
CONECT   20    6   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24   25                                             
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   22                                                            
CONECT   26    3                                                            
CONECT   27    1                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   58    0
END

View in JSmol

Synonyms

Value	Source
2-[(3AS,5S,6as)-5-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-6a-hydroxy-2-imino-octahydropyrrolo[2,3-D]imidazol-4-yl]ethane-1-sulfonate	Generator
2-[(3AS,5S,6as)-5-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-6a-hydroxy-2-imino-octahydropyrrolo[2,3-D]imidazol-4-yl]ethane-1-sulphonate	Generator
2-[(3AS,5S,6as)-5-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-6a-hydroxy-2-imino-octahydropyrrolo[2,3-D]imidazol-4-yl]ethane-1-sulphonic acid	Generator

Chemical Formula

C₁₃H₁₈Br₂N₆O₅S

Average Mass

530.1900 Da

Monoisotopic Mass

527.94262 Da

IUPAC Name

2-[(3aR,5S,6aS)-2-amino-5-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-6a-hydroxy-1H,3aH,4H,5H,6H,6aH-pyrrolo[2,3-d]imidazol-4-yl]ethane-1-sulfonic acid

Traditional Name

2-[(3aR,5S,6aS)-2-amino-5-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-6a-hydroxy-1H,3aH,5H,6H-pyrrolo[2,3-d]imidazol-4-yl]ethanesulfonic acid

CAS Registry Number

Not Available

SMILES

NC1=N[C@H]2N(CCS(O)(=O)=O)[C@H](CNC(=O)C3=CC(Br)=C(Br)N3)C[C@@]2(O)N1

InChI Identifier

InChI=1S/C13H18Br2N6O5S/c14-7-3-8(18-9(7)15)10(22)17-5-6-4-13(23)11(19-12(16)20-13)21(6)1-2-27(24,25)26/h3,6,11,18,23H,1-2,4-5H2,(H,17,22)(H3,16,19,20)(H,24,25,26)/t6-,11-,13-/m0/s1

InChI Key

ZMEUCKKPACZQIQ-FOGGNADHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Agelas sp.	Animalia	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2-heteroaryl carboxamides. 2-Heteroaryl carboxamides are compounds containing a heteroaromatic ring that carries a carboxamide group.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Carboxylic acid derivatives

Direct Parent

2-heteroaryl carboxamides

Alternative Parents

Substituents

2-heteroaryl carboxamide
Pyrrole-2-carboxylic acid or derivatives
Pyrrole-2-carboxamide
Aryl bromide
Aryl halide
Substituted pyrrole
N-alkylpyrrolidine
Organic sulfonic acid or derivatives
Organosulfonic acid or derivatives
Heteroaromatic compound
Pyrrole
Pyrrolidine
2-imidazoline
Alkanesulfonic acid
Sulfonyl
Organosulfonic acid
Secondary carboxylic acid amide
Guanidine
Alkanolamine
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboximidamide
Organooxygen compound
Organonitrogen compound
Organobromide
Organohalogen compound
Hydrocarbon derivative
Organosulfur compound
Amine
Organic nitrogen compound
Organic oxygen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.1	ALOGPS
logP	-0.79	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	-1.1	ChemAxon
pKa (Strongest Basic)	7.84	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	173.14 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	101.61 m³·mol⁻¹	ChemAxon
Polarizability	42.68 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28285806

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

25136814

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-Nagelamide M (NP0082052)

MOL for NP0082052 ((-)-Nagelamide M)

3D MOL for NP0082052 ((-)-Nagelamide M)

3D SDF for NP0082052 ((-)-Nagelamide M)

3D-SDF for NP0082052 ((-)-Nagelamide M)

PDB for NP0082052 ((-)-Nagelamide M)

3D PDB for NP0082052 ((-)-Nagelamide M)

SMILES for NP0082052 ((-)-Nagelamide M)

INCHI for NP0082052 ((-)-Nagelamide M)

Structure for NP0082052 ((-)-Nagelamide M)

3D Structure for NP0082052 ((-)-Nagelamide M)