Np mrd loader

Record Information
Version1.0
Created at2022-04-29 03:04:47 UTC
Updated at2022-04-29 03:04:47 UTC
NP-MRD IDNP0082030
Secondary Accession NumbersNone
Natural Product Identification
Common NameKoshikamide B
Description(2S)-N-[(3aS,6R,9S,12S,18S,21S,22R,25S,28R,31R,34S,34aR)-6-[(2R)-butan-2-yl]-25-[(2S)-butan-2-yl]-2,5,8,11,14,20,30,33,34a-nonahydroxy-31-{2-hydroxy-2-[(C-hydroxycarbonimidoyl)imino]ethyl}-12,18-bis[(C-hydroxycarbonimidoyl)methyl]-9,16,22,26,28,34-hexamethyl-17,24,27-trioxo-3H,3aH,6H,9H,12H,15H,16H,17H,18H,21H,22H,24H,25H,26H,27H,28H,31H,34H,34aH-pyrrolo[2,3-m]1-oxa-4,7,10,15,18,21,24,27,30-nonaazacyclotritriacontan-21-yl]-2-{[(2S)-1-hydroxy-2-[(2S)-2-[(2S,3R)-2-[(2S)-2-[(2S)-2-[(2R)-2-[(1-hydroxy-2-methoxyethylidene)amino]-N-methyl-3-phenylpropanamido]-N,3-dimethylbutanamido]-3-(C-hydroxycarbonimidoyl)-N-methylpropanamido]-N,3-dimethylpentanamido]-N,3-dimethylbutanamido]-4-methylpentylidene]amino}butanediimidic acid belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. Koshikamide B is found in Theonella sp. It was first documented in 2022 (PMID: 35490355). Based on a literature review a significant number of articles have been published on (2S)-N-[(3aS,6R,9S,12S,18S,21S,22R,25S,28R,31R,34S,34aR)-6-[(2R)-butan-2-yl]-25-[(2S)-butan-2-yl]-2,5,8,11,14,20,30,33,34a-nonahydroxy-31-{2-hydroxy-2-[(C-hydroxycarbonimidoyl)imino]ethyl}-12,18-bis[(C-hydroxycarbonimidoyl)methyl]-9,16,22,26,28,34-hexamethyl-17,24,27-trioxo-3H,3aH,6H,9H,12H,15H,16H,17H,18H,21H,22H,24H,25H,26H,27H,28H,31H,34H,34aH-pyrrolo[2,3-m]1-oxa-4,7,10,15,18,21,24,27,30-nonaazacyclotritriacontan-21-yl]-2-{[(2S)-1-hydroxy-2-[(2S)-2-[(2S,3R)-2-[(2S)-2-[(2S)-2-[(2R)-2-[(1-hydroxy-2-methoxyethylidene)amino]-N-methyl-3-phenylpropanamido]-N,3-dimethylbutanamido]-3-(C-hydroxycarbonimidoyl)-N-methylpropanamido]-N,3-dimethylpentanamido]-N,3-dimethylbutanamido]-4-methylpentylidene]amino}butanediimidic acid (PMID: 35490354) (PMID: 35490353) (PMID: 35490352) (PMID: 35490351).
Structure
Thumb
Synonyms
ValueSource
(2S)-N-[(3AS,6R,9S,12S,18S,21S,22R,25S,28R,31R,34S,34ar)-6-[(2R)-butan-2-yl]-25-[(2S)-butan-2-yl]-2,5,8,11,14,20,30,33,34a-nonahydroxy-31-{2-hydroxy-2-[(C-hydroxycarbonimidoyl)imino]ethyl}-12,18-bis[(C-hydroxycarbonimidoyl)methyl]-9,16,22,26,28,34-hexamethyl-17,24,27-trioxo-3H,3ah,6H,9H,12H,15H,16H,17H,18H,21H,22H,24H,25H,26H,27H,28H,31H,34H,34ah-pyrrolo[2,3-m]1-oxa-4,7,10,15,18,21,24,27,30-nonaazacyclotritriacontan-21-yl]-2-{[(2S)-1-hydroxy-2-[(2S)-2-[(2S,3R)-2-[(2S)-2-[(2S)-2-[(2R)-2-[(1-hydroxy-2-methoxyethylidene)amino]-N-methyl-3-phenylpropanamido]-N,3-dimethylbutanamido]-3-(C-hydroxycarbonimidoyl)-N-methylpropanamido]-N,3-dimethylpentanamido]-N,3-dimethylbutanamido]-4-methylpentylidene]amino}butanediimidateGenerator
Chemical FormulaC93H150N24O28
Average Mass2052.3630 Da
Monoisotopic Mass2051.10514 Da
IUPAC Name(2S)-N-[(1S,2R)-1-{[(1S)-1-{[(1S)-1-{[(1S)-1-{[(3aS,6R,9S,12S,18S,21S,22R,25S,28R,31R,34S,34aR)-6-[(2R)-butan-2-yl]-25-[(2S)-butan-2-yl]-31-[2-(carbamoylamino)-2-oxoethyl]-12,18-bis(carbamoylmethyl)-34a-hydroxy-9,16,22,26,28,34-hexamethyl-2,5,8,11,14,17,20,24,27,30,33-undecaoxo-tetratriacontahydro-1H-pyrrolo[2,3-m]1-oxa-4,7,10,15,18,21,24,27,30-nonaazacyclotritriacontan-21-yl]carbamoyl}-2-carbamoylethyl]carbamoyl}-3-methylbutyl](methyl)carbamoyl}-2-methylpropyl](methyl)carbamoyl}-2-methylbutyl]-2-[(2S)-2-[(2R)-2-(2-methoxyacetamido)-N-methyl-3-phenylpropanamido]-N,3-dimethylbutanamido]-N-methylbutanediamide
Traditional Name(2S)-N-[(1S,2R)-1-{[(1S)-1-{[(1S)-1-{[(1S)-1-{[(3aS,6R,9S,12S,18S,21S,22R,25S,28R,31R,34S,34aR)-6-[(2R)-butan-2-yl]-25-[(2S)-butan-2-yl]-31-[2-(carbamoylamino)-2-oxoethyl]-12,18-bis(carbamoylmethyl)-34a-hydroxy-9,16,22,26,28,34-hexamethyl-2,5,8,11,14,17,20,24,27,30,33-undecaoxo-icosahydro-1H-pyrrolo[2,3-m]1-oxa-4,7,10,15,18,21,24,27,30-nonaazacyclotritriacontan-21-yl]carbamoyl}-2-carbamoylethyl]carbamoyl}-3-methylbutyl](methyl)carbamoyl}-2-methylpropyl](methyl)carbamoyl}-2-methylbutyl]-2-[(2S)-2-[(2R)-2-(2-methoxyacetamido)-N-methyl-3-phenylpropanamido]-N,3-dimethylbutanamido]-N-methylsuccinamide
CAS Registry NumberNot Available
SMILES
CC[C@@H](C)[C@H](N(C)C(=O)[C@H](CC(N)=O)N(C)C(=O)[C@H](C(C)C)N(C)C(=O)[C@@H](CC1=CC=CC=C1)NC(=O)COC)C(=O)N(C)[C@@H](C(C)C)C(=O)N(C)[C@@H](CC(C)C)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H]1[C@@H](C)OC(=O)[C@H]([C@@H](C)CC)N(C)C(=O)[C@@H](C)NC(=O)[C@@H](CC(=O)NC(N)=O)NC(=O)[C@@H](C)[C@]2(O)NC(=O)C[C@@H]2NC(=O)[C@H](NC(=O)[C@H](C)NC(=O)[C@H](CC(N)=O)NC(=O)CN(C)C(=O)[C@H](CC(N)=O)NC1=O)[C@H](C)CC
InChI Identifier
InChI=1S/C93H150N24O28/c1-25-46(10)70-82(132)106-61-40-67(123)110-93(61,143)49(13)76(126)103-56(38-66(122)107-92(98)142)79(129)100-51(15)84(134)117(23)75(48(12)27-3)91(141)145-52(16)71(83(133)105-58(37-64(96)120)85(135)111(17)41-68(124)101-54(35-62(94)118)78(128)99-50(14)77(127)108-70)109-80(130)55(36-63(95)119)104-81(131)59(33-43(4)5)112(18)88(138)73(45(8)9)115(21)90(140)74(47(11)26-2)116(22)87(137)60(39-65(97)121)113(19)89(139)72(44(6)7)114(20)86(136)57(102-69(125)42-144-24)34-53-31-29-28-30-32-53/h28-32,43-52,54-61,70-75,143H,25-27,33-42H2,1-24H3,(H2,94,118)(H2,95,119)(H2,96,120)(H2,97,121)(H,99,128)(H,100,129)(H,101,124)(H,102,125)(H,103,126)(H,104,131)(H,105,133)(H,106,132)(H,108,127)(H,109,130)(H,110,123)(H3,98,107,122,142)/t46-,47-,48+,49-,50+,51-,52-,54+,55+,56-,57-,58+,59+,60+,61+,70-,71+,72+,73+,74+,75+,93-/m1/s1
InChI KeyDROLLCAFKYBMBA-SDOOQFJRSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Theonella sp.-
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassDepsipeptides
Direct ParentCyclic depsipeptides
Alternative Parents
Substituents
  • Cyclic depsipeptide
  • Phenylalanine or derivatives
  • Isoleucine or derivatives
  • Macrolide lactam
  • Valine or derivatives
  • N-acyl-alpha amino acid or derivatives
  • Macrolide
  • Macrolactam
  • Alpha-amino acid ester
  • Alpha-amino acid amide
  • Amphetamine or derivatives
  • Alpha-amino acid or derivatives
  • Benzenoid
  • N-acyl-amine
  • Monocyclic benzene moiety
  • Cyclic carboximidic acid
  • Tertiary carboxylic acid amide
  • Pyrroline
  • Lactone
  • Lactam
  • Carboxylic acid ester
  • Carboxamide group
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Polyol
  • Monocarboxylic acid or derivatives
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Carboximidic acid derivative
  • Carboximidic acid
  • Alkanolamine
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Imine
  • Carbonyl group
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.85ALOGPS
logP-8.3ChemAxon
logS-5.1ALOGPS
pKa (Strongest Acidic)10.28ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count27ChemAxon
Hydrogen Donor Count18ChemAxon
Polar Surface Area762.58 ŲChemAxon
Rotatable Bond Count39ChemAxon
Refractivity511.13 m³·mol⁻¹ChemAxon
Polarizability209 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound163088314
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Baumbusch J, Blakey EP, Carapellotti AM, Dohmen M, Fick DM, Kagan SH, Melendez-Torres GJ, Morgan BE, Munsterman E, Resnick B, Young HM: Nurses and the decade of healthy ageing: An unprecedented opportunity. Int J Older People Nurs. 2022 May;17(3):e12469. doi: 10.1111/opn.12469. [PubMed:35490355 ]
  2. Hill NL, Bratlee-Whitaker E, Wion RK, Madrigal C, Bhargava S, Mogle J: Factors that influence the emotional impact of memory problems in older adults: A qualitative descriptive study. Int J Older People Nurs. 2022 May;17(3):e12439. doi: 10.1111/opn.12439. Epub 2021 Dec 8. [PubMed:35490354 ]
  3. Polastri M, Loforte A, Swol J: "Racing team" or "orchestra" approach? Two different perspectives on providing care in emergency and critical settings. Artif Organs. 2022 May 1. doi: 10.1111/aor.14274. [PubMed:35490353 ]
  4. Wei YF, Wang L, Xia ZY, Gou M, Sun ZY, Lv WF, Tang YQ: Microbial communities in crude oil phase and filter-graded aqueous phase from a Daqing oilfield after polymer flooding. J Appl Microbiol. 2022 May 1. doi: 10.1111/jam.15603. [PubMed:35490352 ]
  5. Authors unspecified: CORRIGENDUM. Transbound Emerg Dis. 2022 May 1. doi: 10.1111/tbed.14572. [PubMed:35490351 ]