NP-MRD: Showing NP-Card for 6-Dehydrogingerdione (NP0081522)

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Record Information

Version

2.0

Created at

2022-04-29 02:31:44 UTC

Updated at

2022-04-29 02:31:44 UTC

NP-MRD ID

NP0081522

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6-Dehydrogingerdione

Description

[6]-Dehydrogingerdione belongs to the class of organic compounds known as hydroxycinnamic acids and derivatives. Hydroxycinnamic acids and derivatives are compounds containing an cinnamic acid (or a derivative thereof) where the benzene ring is hydroxylated. 6-Dehydrogingerdione is found in Curcuma longa and Zingiber officinale . 6-Dehydrogingerdione was first documented in 2017 (PMID: 28872603). Based on a literature review very few articles have been published on [6]-Dehydrogingerdione (PMID: 31762622).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 43 43  0  0  0  0  0  0  0  0999 V2000
    5.9238   -0.5483    2.0243 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6678    0.7774    1.3373 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7255    0.5636   -0.1663 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6832   -0.4361   -0.6109 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2826    0.0221   -0.2707 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3238   -1.0112   -0.7410 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6689   -2.0331   -1.3026 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8755   -0.7826   -0.5129 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2759   -0.2865   -1.7597 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9870   -0.1307   -2.7799 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1555    0.0431   -1.8661 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9589   -0.0956   -0.8386 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3844    0.1997   -0.8338 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0799    0.6700   -1.9241 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4458    0.9467   -1.8983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1112    0.7349   -0.7248 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4618    0.9978   -0.6640 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4669    0.2583    0.4225 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1877    0.0599    1.5900 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4953   -0.4214    2.7186 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1188    0.0065    0.3259 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3265   -1.3102    1.3316 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9454   -0.8962    2.4118 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5807   -0.4201    2.8987 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5239    1.4354    1.6204 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7213    1.2237    1.6743 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7230    0.1398   -0.3815 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6533    1.5180   -0.6865 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8467   -1.3916   -0.0775 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7953   -0.5746   -1.7030 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0977    0.9994   -0.7862 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1844    0.2094    0.7984 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4137   -1.7646   -0.1936 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6983   -0.1049    0.3511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5518    0.3990   -2.7852 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5027   -0.4625    0.0732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5155    0.8252   -2.8367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9580    1.3208   -2.7941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9710    1.3428   -1.4648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1334   -0.3197    3.6400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2355   -1.5133    2.6237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5772    0.1742    2.9306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6128   -0.3646    1.2161 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 18 21  2  0
 21 13  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  2 25  1  0
  2 26  1  0
  3 27  1  0
  3 28  1  0
  4 29  1  0
  4 30  1  0
  5 31  1  0
  5 32  1  0
  8 33  1  0
  8 34  1  0
 11 35  1  0
 12 36  1  0
 14 37  1  0
 15 38  1  0
 17 39  1  0
 20 40  1  0
 20 41  1  0
 20 42  1  0
 21 43  1  0
M  END


  Mrv1652304292204312D          

 21 21  0  0  0  0            999 V2000
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  3 19  1  0  0  0  0
 19 20  1  0  0  0  0
  2 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0081522

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCC(=O)CC(=O)\C=C\C1=CC=C(O)C(OC)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C17H22O4/c1-3-4-5-6-14(18)12-15(19)9-7-13-8-10-16(20)17(11-13)21-2/h7-11,20H,3-6,12H2,1-2H3/b9-7+

> <INCHI_KEY>
JUKHKHMSQCQHEN-VQHVLOKHSA-N

> <FORMULA>
C17H22O4

> <MOLECULAR_WEIGHT>
290.359

> <EXACT_MASS>
290.151809188

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
32.61459208698152

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1E)-1-(4-hydroxy-3-methoxyphenyl)dec-1-ene-3,5-dione

> <ALOGPS_LOGP>
3.69

> <JCHEM_LOGP>
4.260571006000002

> <ALOGPS_LOGS>
-4.35

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.579826530971546

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.516682591444864

> <JCHEM_PKA_STRONGEST_BASIC>
-4.652305848047412

> <JCHEM_POLAR_SURFACE_AREA>
63.60000000000001

> <JCHEM_REFRACTIVITY>
83.3802

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.29e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1E)-1-(4-hydroxy-3-methoxyphenyl)dec-1-ene-3,5-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.000   0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.000   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       6.668   3.850   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.336   2.310   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       9.336   3.850   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      10.669   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      12.003   2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      13.337   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      14.670   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      16.004   1.540   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3   21                                                  
CONECT    3    2    4   19                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17                                                            
CONECT   19    3   20                                                       
CONECT   20   19                                                            
CONECT   21    2                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₂₂O₄

Average Mass

290.3590 Da

Monoisotopic Mass

290.15181 Da

IUPAC Name

(1E)-1-(4-hydroxy-3-methoxyphenyl)dec-1-ene-3,5-dione

Traditional Name

(1E)-1-(4-hydroxy-3-methoxyphenyl)dec-1-ene-3,5-dione

CAS Registry Number

Not Available

SMILES

CCCCCC(=O)CC(=O)\C=C\C1=CC=C(O)C(OC)=C1

InChI Identifier

InChI=1S/C17H22O4/c1-3-4-5-6-14(18)12-15(19)9-7-13-8-10-16(20)17(11-13)21-2/h7-11,20H,3-6,12H2,1-2H3/b9-7+

InChI Key

JUKHKHMSQCQHEN-VQHVLOKHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Curcuma longa	LOTUS Database	35616633
Zingiber officinale	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxycinnamic acids and derivatives. Hydroxycinnamic acids and derivatives are compounds containing an cinnamic acid (or a derivative thereof) where the benzene ring is hydroxylated.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Hydroxycinnamic acids and derivatives

Direct Parent

Hydroxycinnamic acids and derivatives

Alternative Parents

Substituents

Hydroxycinnamic acid or derivatives
Methoxyphenol
Phenoxy compound
Anisole
Phenol ether
Methoxybenzene
Styrene
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
Phenol
1,3-diketone
Monocyclic benzene moiety
1,3-dicarbonyl compound
Benzenoid
Acryloyl-group
Enone
Alpha,beta-unsaturated ketone
Ketone
Ether
Hydrocarbon derivative
Organooxygen compound
Organic oxide
Organic oxygen compound
Carbonyl group
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.69	ALOGPS
logP	4.26	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	8.52	ChemAxon
pKa (Strongest Basic)	-4.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	63.6 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	83.38 m³·mol⁻¹	ChemAxon
Polarizability	32.61 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00035470

Chemspider ID

7971781

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9796015

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Sahlan M, Devina A, Pratami DK, Situmorang H, Farida S, Munim A, Kusumoputro B, Yohda M, Faried A, Gozan M, Ledyawati M: Anti-inflammatory activity of Tetragronula species from Indonesia. Saudi J Biol Sci. 2019 Nov;26(7):1531-1538. doi: 10.1016/j.sjbs.2018.12.008. Epub 2018 Dec 17. [PubMed:31762622 ]
Liu CM, Kao CL, Tseng YT, Lo YC, Chen CY: Ginger Phytochemicals Inhibit Cell Growth and Modulate Drug Resistance Factors in Docetaxel Resistant Prostate Cancer Cell. Molecules. 2017 Sep 5;22(9). pii: molecules22091477. doi: 10.3390/molecules22091477. [PubMed:28872603 ]

Showing NP-Card for 6-Dehydrogingerdione (NP0081522)

MOL for NP0081522 (6-Dehydrogingerdione)

3D MOL for NP0081522 (6-Dehydrogingerdione)

3D SDF for NP0081522 (6-Dehydrogingerdione)

3D-SDF for NP0081522 (6-Dehydrogingerdione)

PDB for NP0081522 (6-Dehydrogingerdione)

3D PDB for NP0081522 (6-Dehydrogingerdione)

SMILES for NP0081522 (6-Dehydrogingerdione)

INCHI for NP0081522 (6-Dehydrogingerdione)

Structure for NP0081522 (6-Dehydrogingerdione)

3D Structure for NP0081522 (6-Dehydrogingerdione)