NP-MRD: Showing NP-Card for (-)-Oxygambogic acid (NP0081378)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-04-29 02:20:58 UTC

Updated at

2022-04-29 02:20:58 UTC

NP-MRD ID

NP0081378

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Oxygambogic acid

Description

(2Z)-4-[(1S,2S,8R,17S,19R)-12-hydroxy-8-[(2E)-4-hydroxy-4-methylpent-2-en-1-yl]-8,21,21-trimethyl-5-(3-methylbut-2-en-1-yl)-14,18-dioxo-3,7,20-trioxahexacyclo[15.4.1.0²,¹⁵.0²,¹⁹.0⁴,¹³.0⁶,¹¹]Docosa-4(13),5,9,11,15-pentaen-19-yl]-2-methylbut-2-enoic acid belongs to the class of organic compounds known as pyranoxanthones. These are organic aromatic compounds containing a pyran or a hydrogenated derivative fused to a xanthone ring system. (-)-Oxygambogic acid is found in Garcinia hanburyi . Based on a literature review very few articles have been published on (2Z)-4-[(1S,2S,8R,17S,19R)-12-hydroxy-8-[(2E)-4-hydroxy-4-methylpent-2-en-1-yl]-8,21,21-trimethyl-5-(3-methylbut-2-en-1-yl)-14,18-dioxo-3,7,20-trioxahexacyclo[15.4.1.0²,¹⁵.0²,¹⁹.0⁴,¹³.0⁶,¹¹]Docosa-4(13),5,9,11,15-pentaen-19-yl]-2-methylbut-2-enoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292204202D          

 47 52  0  0  1  0            999 V2000
    6.2355    0.9474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4552    1.7426    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8764    2.3305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0779    2.1231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8582    1.3279    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4370    0.7400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3913   -0.1739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6754   -0.9918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4856   -1.1471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7562   -1.9265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0252   -0.5231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0310    1.1618    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2728    1.6316    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7118    2.4109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2643    3.1526    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4682    2.8562    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8354    2.3041    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0314    2.5987    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2894    1.5699    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6097    1.0383    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1790    0.4439    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7098    1.0900    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7075    2.0415    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7231   -0.3818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3674   -0.0520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7122    0.5683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3559   -0.0657    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1484   -0.8642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3532   -1.0837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7654   -0.5048    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1457   -1.8822    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7362   -1.4431    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5080    2.7355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7900    3.5767    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1334    3.1756    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2537    1.9499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8326    1.3620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6128    0.5668    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.8143    0.3595    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7821   -0.3185    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    0.3801    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3290    0.6770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9629    0.1490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7371    0.4340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5113    0.7190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0221   -0.3402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4521    1.2082    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
  5 12  1  0  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 16 15  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 13 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 13 22  1  0  0  0  0
 22 23  1  6  0  0  0
 16 23  1  0  0  0  0
 21 24  1  0  0  0  0
 21 25  1  0  0  0  0
 19 26  1  6  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 28 32  1  0  0  0  0
 14 33  1  0  0  0  0
  4 33  1  0  0  0  0
 33 34  2  0  0  0  0
  3 35  1  0  0  0  0
  2 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
  1 39  1  0  0  0  0
 38 40  1  6  0  0  0
 38 41  1  1  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 44 46  1  0  0  0  0
 44 47  1  0  0  0  0
M  END

     RDKit          3D

 91 96  0  0  0  0  0  0  0  0999 V2000
   -0.8108   -3.6125   -2.6073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6029   -2.1842   -2.9359 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2683   -1.7454   -4.2448 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0729   -1.3270   -2.2231 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7522   -1.5855   -0.9667 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6596   -0.5304    0.0458 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8192    0.2399    0.1983 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8608    1.2706    1.1125 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7399    1.5599    1.9045 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8427    2.5931    2.7957 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4089    0.7968    1.7528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4233   -0.2455    0.8140 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5990   -0.9885    0.6875 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8008   -0.8137    1.3523 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7719    0.2877    2.3687 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8896    0.4865    3.0619 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9661   -0.5306    2.7539 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2597   -1.8649    3.0621 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2038   -2.1178    2.0093 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8539   -2.8450    0.8637 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0255   -3.7081    1.3049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8745   -3.8288    0.2246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2078   -1.9364   -0.0911 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0060   -0.6549    0.4484 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.7845    0.3036   -0.7059 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0758    0.3770   -1.4078 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7353    1.4826   -1.6581 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0699    1.3998   -2.3858 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1979    2.7737   -1.3726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0739    2.9965   -0.9378 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9775    3.9529   -1.5894 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1651   -0.3846    1.2897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2302   -0.0614    0.8551 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5906    1.0797    2.5510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6196    2.0002    3.4035 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0375    2.0930    1.1904 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0593    1.8955    0.4119 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0725    0.8251   -0.6025 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1683    1.4846   -1.9906 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3899    0.0800   -0.4212 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5123    1.0448   -0.4605 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3459    1.1948    0.5535 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4643    2.1738    0.4871 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.7307    1.4413    0.1166 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1970    3.2257   -0.5633 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6006    2.8433    1.7032 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9592   -0.0229   -0.5659 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1213   -4.2377   -3.2506 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8443   -3.9282   -2.8564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6034   -3.8169   -1.5580 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3590   -1.8486   -4.1580 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9372   -2.4452   -5.0408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9044   -0.7472   -4.5233 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1346   -0.2917   -2.6125 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2905   -2.4991   -0.4888 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8110   -1.8742   -1.1592 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2944    3.0204    3.4471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0180    1.2795    3.7627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8512   -0.3950    3.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0136   -2.6337    3.1649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7351   -1.7402    4.0305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3283   -2.6618    2.4193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2151   -4.4437    0.4682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6632   -4.3306    2.1439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9513   -3.1660    1.4626 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0062   -4.8483    0.6899 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8330   -3.5281    0.4083 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0885   -3.9852   -0.8440 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3036    1.1952   -0.3811 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0181   -0.2508   -1.3548 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5373   -0.5722   -1.7562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7868    0.9714   -1.6678 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3473    2.3634   -2.8257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9153    0.6639   -3.1986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1036    4.2622   -2.5409 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0154    2.8861    1.9456 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9348    2.5652    0.5388 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5621    0.7644   -2.6924 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8735    2.3245   -1.8781 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1897    1.9430   -2.2531 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4347   -0.4552    0.5418 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4875   -0.6907   -1.2231 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6855    1.6741   -1.3480 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2107    0.5871    1.4409 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0941    1.7639   -0.8625 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5467    1.6649    0.8513 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5379    0.3400    0.0717 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1940    3.6762   -0.4695 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9559    4.0472   -0.4025 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3481    2.8064   -1.5683 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0922    3.6769    1.6788 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6 12  2  0
 12 13  1  0
 14 13  1  6
 14 19  1  0
 19 18  1  0
 18 17  1  0
 17 16  1  0
 16 15  2  0
 15 34  1  0
 34 35  2  0
 34 11  1  0
 11  9  2  0
  9 10  1  0
  9  8  1  0
  8  7  2  0
  7 47  1  0
 47 38  1  0
 38 39  1  6
 38 40  1  0
 40 41  1  0
 41 42  2  0
 42 43  1  0
 43 44  1  0
 43 45  1  0
 43 46  1  1
 38 37  1  0
 37 36  2  0
 17 32  1  0
 32 33  2  0
 32 24  1  0
 24 25  1  6
 25 26  1  0
 26 27  2  0
 27 28  1  0
 27 29  1  0
 29 31  1  0
 29 30  2  0
 24 23  1  0
 23 20  1  0
 20 21  1  1
 20 22  1  0
  7  6  1  0
 11 12  1  0
 36  8  1  0
 15 14  1  0
 24 14  1  0
 20 19  1  0
  1 48  1  0
  1 49  1  0
  1 50  1  0
  3 51  1  0
  3 52  1  0
  3 53  1  0
  4 54  1  0
  5 55  1  0
  5 56  1  0
 19 62  1  1
 18 60  1  0
 18 61  1  0
 17 59  1  1
 16 58  1  0
 10 57  1  0
 39 78  1  0
 39 79  1  0
 39 80  1  0
 40 81  1  0
 40 82  1  0
 41 83  1  0
 42 84  1  0
 44 85  1  0
 44 86  1  0
 44 87  1  0
 45 88  1  0
 45 89  1  0
 45 90  1  0
 46 91  1  0
 37 77  1  0
 36 76  1  0
 25 69  1  0
 25 70  1  0
 26 71  1  0
 28 72  1  0
 28 73  1  0
 28 74  1  0
 31 75  1  0
 21 63  1  0
 21 64  1  0
 21 65  1  0
 22 66  1  0
 22 67  1  0
 22 68  1  0
M  END


  Mrv1652304292204202D          

 47 52  0  0  1  0            999 V2000
    6.2355    0.9474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4552    1.7426    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8764    2.3305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0779    2.1231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8582    1.3279    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4370    0.7400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3913   -0.1739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6754   -0.9918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4856   -1.1471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7562   -1.9265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0252   -0.5231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0310    1.1618    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2728    1.6316    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7118    2.4109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2643    3.1526    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4682    2.8562    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8354    2.3041    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0314    2.5987    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2894    1.5699    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6097    1.0383    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1790    0.4439    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7098    1.0900    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7075    2.0415    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7231   -0.3818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3674   -0.0520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7122    0.5683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3559   -0.0657    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1484   -0.8642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3532   -1.0837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7654   -0.5048    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1457   -1.8822    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7362   -1.4431    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5080    2.7355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7900    3.5767    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1334    3.1756    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2537    1.9499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8326    1.3620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6128    0.5668    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.8143    0.3595    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7821   -0.3185    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    0.3801    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3290    0.6770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9629    0.1490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7371    0.4340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5113    0.7190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0221   -0.3402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4521    1.2082    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
  5 12  1  0  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 16 15  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 13 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 13 22  1  0  0  0  0
 22 23  1  6  0  0  0
 16 23  1  0  0  0  0
 21 24  1  0  0  0  0
 21 25  1  0  0  0  0
 19 26  1  6  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 28 32  1  0  0  0  0
 14 33  1  0  0  0  0
  4 33  1  0  0  0  0
 33 34  2  0  0  0  0
  3 35  1  0  0  0  0
  2 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
  1 39  1  0  0  0  0
 38 40  1  6  0  0  0
 38 41  1  1  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 44 46  1  0  0  0  0
 44 47  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0081378

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC1=C2O[C@@]34[C@H]5C[C@@H](C=C3C(=O)C2=C(O)C2=C1O[C@](C)(C\C=C\C(C)(C)O)C=C2)C(=O)[C@]4(C\C=C(\C)C(O)=O)OC5(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C38H44O9/c1-20(2)10-11-24-30-23(13-16-36(8,45-30)15-9-14-34(4,5)44)28(39)27-29(40)25-18-22-19-26-35(6,7)47-37(32(22)41,17-12-21(3)33(42)43)38(25,26)46-31(24)27/h9-10,12-14,16,18,22,26,39,44H,11,15,17,19H2,1-8H3,(H,42,43)/b14-9+,21-12-/t22-,26+,36-,37+,38-/m1/s1

> <INCHI_KEY>
AAEQTEKIFSEBLF-PAFGRAQFSA-N

> <FORMULA>
C38H44O9

> <MOLECULAR_WEIGHT>
644.761

> <EXACT_MASS>
644.298532997

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
91

> <JCHEM_AVERAGE_POLARIZABILITY>
69.05758128640073

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2Z)-4-[(1S,2S,8R,17S,19R)-12-hydroxy-8-[(2E)-4-hydroxy-4-methylpent-2-en-1-yl]-8,21,21-trimethyl-5-(3-methylbut-2-en-1-yl)-14,18-dioxo-3,7,20-trioxahexacyclo[15.4.1.0^{2,15}.0^{2,19}.0^{4,13}.0^{6,11}]docosa-4,6(11),9,12,15-pentaen-19-yl]-2-methylbut-2-enoic acid

> <ALOGPS_LOGP>
5.06

> <JCHEM_LOGP>
6.512207748333334

> <ALOGPS_LOGS>
-5.87

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
8.580891829632408

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.756747512990742

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5810697590847873

> <JCHEM_POLAR_SURFACE_AREA>
139.59

> <JCHEM_REFRACTIVITY>
181.1103

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.71e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2Z)-4-[(1S,2S,8R,17S,19R)-12-hydroxy-8-[(2E)-4-hydroxy-4-methylpent-2-en-1-yl]-8,21,21-trimethyl-5-(3-methylbut-2-en-1-yl)-14,18-dioxo-3,7,20-trioxahexacyclo[15.4.1.0^{2,15}.0^{2,19}.0^{4,13}.0^{6,11}]docosa-4,6(11),9,12,15-pentaen-19-yl]-2-methylbut-2-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0      11.640   1.768   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.050   3.253   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.969   4.350   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.479   3.963   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.069   2.479   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.149   1.381   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      10.064  -0.325   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.594  -1.851   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.106  -2.141   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.612  -3.596   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      13.114  -0.976   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       7.525   2.169   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.109   3.046   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.929   4.500   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.093   5.885   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.607   5.332   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.426   4.301   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       1.925   4.851   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       4.274   2.930   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       3.005   1.938   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.067   0.829   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.058   2.035   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.054   3.811   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.083  -0.713   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.552  -0.097   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.063   1.061   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.264  -0.123   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.877  -1.613   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.393  -2.023   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       3.295  -0.942   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0       4.005  -3.513   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       6.974  -2.694   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       8.415   5.106   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       8.941   6.676   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      11.449   5.928   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      13.540   3.640   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      14.621   2.542   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      14.211   1.058   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      12.720   0.671   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      14.527  -0.594   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      15.908   0.709   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      17.414   1.264   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      18.597   0.278   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      20.043   0.810   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      21.488   1.342   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      20.575  -0.635   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      19.511   2.255   0.000  0.00  0.00           O+0
CONECT    1    2    6   39                                                  
CONECT    2    1    3   36                                                  
CONECT    3    2    4   35                                                  
CONECT    4    3    5   33                                                  
CONECT    5    4    6   12                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    5   13                                                       
CONECT   13   12   14   19   22                                             
CONECT   14   13   15   33                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   23                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   13   20   26                                             
CONECT   20   19   21                                                       
CONECT   21   20   22   24   25                                             
CONECT   22   21   13   23                                                  
CONECT   23   22   16                                                       
CONECT   24   21                                                            
CONECT   25   21                                                            
CONECT   26   19   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   32                                                  
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29                                                            
CONECT   32   28                                                            
CONECT   33   14    4   34                                                  
CONECT   34   33                                                            
CONECT   35    3                                                            
CONECT   36    2   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39   40   41                                             
CONECT   39   38    1                                                       
CONECT   40   38                                                            
CONECT   41   38   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45   46   47                                             
CONECT   45   44                                                            
CONECT   46   44                                                            
CONECT   47   44                                                            
MASTER        0    0    0    0    0    0    0    0   47    0  104    0
END

View in JSmol

Synonyms

Value	Source
(2Z)-4-[(1S,2S,8R,17S,19R)-12-Hydroxy-8-[(2E)-4-hydroxy-4-methylpent-2-en-1-yl]-8,21,21-trimethyl-5-(3-methylbut-2-en-1-yl)-14,18-dioxo-3,7,20-trioxahexacyclo[15.4.1.0,.0,.0,.0,]docosa-4(13),5,9,11,15-pentaen-19-yl]-2-methylbut-2-enoate	Generator

Chemical Formula

C₃₈H₄₄O₉

Average Mass

644.7610 Da

Monoisotopic Mass

644.29853 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(C)=CCC1=C2O[C@@]34[C@H]5C[C@@H](C=C3C(=O)C2=C(O)C2=C1O[C@](C)(C\C=C\C(C)(C)O)C=C2)C(=O)[C@]4(C\C=C(\C)C(O)=O)OC5(C)C

InChI Identifier

InChI=1S/C38H44O9/c1-20(2)10-11-24-30-23(13-16-36(8,45-30)15-9-14-34(4,5)44)28(39)27-29(40)25-18-22-19-26-35(6,7)47-37(32(22)41,17-12-21(3)33(42)43)38(25,26)46-31(24)27/h9-10,12-14,16,18,22,26,39,44H,11,15,17,19H2,1-8H3,(H,42,43)/b14-9+,21-12-/t22-,26+,36-,37+,38-/m1/s1

InChI Key

AAEQTEKIFSEBLF-PAFGRAQFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Garcinia hanburyi	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyranoxanthones. These are organic aromatic compounds containing a pyran or a hydrogenated derivative fused to a xanthone ring system.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Pyranoxanthones

Alternative Parents

Substituents

Pyranoxanthone
Pyranochromene
Chromone
Aromatic monoterpenoid
Monoterpenoid
Aryl ketone
Alkyl aryl ether
Cyclohexenone
Oxepane
Benzenoid
Vinylogous acid
Tetrahydrofuran
Tertiary alcohol
Ketone
Carboxylic acid derivative
Carboxylic acid
Dialkyl ether
Ether
Oxacycle
Monocarboxylic acid or derivatives
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Alcohol
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.06	ALOGPS
logP	6.51	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	3.76	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	139.59 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	181.11 m³·mol⁻¹	ChemAxon
Polarizability	69.06 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162971580

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for (-)-Oxygambogic acid (NP0081378)

MOL for NP0081378 ((-)-Oxygambogic acid)

3D MOL for NP0081378 ((-)-Oxygambogic acid)

3D SDF for NP0081378 ((-)-Oxygambogic acid)

3D-SDF for NP0081378 ((-)-Oxygambogic acid)

PDB for NP0081378 ((-)-Oxygambogic acid)

3D PDB for NP0081378 ((-)-Oxygambogic acid)

SMILES for NP0081378 ((-)-Oxygambogic acid)

INCHI for NP0081378 ((-)-Oxygambogic acid)

Structure for NP0081378 ((-)-Oxygambogic acid)

3D Structure for NP0081378 ((-)-Oxygambogic acid)