NP-MRD: Showing NP-Card for (-)-Gambogefic acid (NP0081348)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-04-29 02:19:04 UTC

Updated at

2022-04-29 02:19:04 UTC

NP-MRD ID

NP0081348

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Gambogefic acid

Description

(2Z)-4-[(1S,2S,9R,14R,21S,23R)-16-hydroxy-8,8,12,25,25-pentamethyl-5-(3-methylbut-2-en-1-yl)-18,22-dioxo-3,7,24-trioxaheptacyclo[19.4.1.0²,¹⁹.0²,²³.0⁴,¹⁷.0⁶,¹⁵.0⁹,¹⁴]Hexacosa-4(17),5,12,15,19-pentaen-23-yl]-2-methylbut-2-enoic acid belongs to the class of organic compounds known as pyranoxanthones. These are organic aromatic compounds containing a pyran or a hydrogenated derivative fused to a xanthone ring system. (-)-Gambogefic acid is found in Garcinia hanburyi . Based on a literature review very few articles have been published on (2Z)-4-[(1S,2S,9R,14R,21S,23R)-16-hydroxy-8,8,12,25,25-pentamethyl-5-(3-methylbut-2-en-1-yl)-18,22-dioxo-3,7,24-trioxaheptacyclo[19.4.1.0²,¹⁹.0²,²³.0⁴,¹⁷.0⁶,¹⁵.0⁹,¹⁴]Hexacosa-4(17),5,12,15,19-pentaen-23-yl]-2-methylbut-2-enoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304292204192D          

 46 52  0  0  1  0            999 V2000
    4.8782   -0.0211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2209   -0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0421   -0.8501    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5208   -0.1781    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1781    0.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3569    0.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1761    1.5181    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4173    2.3302    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8499    2.9291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0849    3.7200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0476    2.7372    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6567    1.2443    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4780    1.1658    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8206    0.4153    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.3420   -0.2566    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.6846   -1.0071    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5059   -1.0856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9845   -0.4136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6419    0.3368    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9563   -1.8446    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7078    2.0270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1809    1.7131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3069   -1.6927    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7908   -1.5070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0795   -2.3483    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9594   -1.3308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6634   -2.1288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8549   -1.9251    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0933   -1.5868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3905   -2.0723    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4232   -0.7859    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4078   -0.6258    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0306   -0.0059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7632   -0.1761    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9525   -1.0847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0678    0.3148    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6459   -0.4027    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8638    1.2350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2404    0.6263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8300    0.0912    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2651    0.8946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8332    1.5976    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0085    1.5750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4107    1.0064    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5766    2.2779    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2260    2.3230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
  5 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15  4  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 14 19  1  6  0  0  0
 17 20  1  0  0  0  0
 13 21  1  0  0  0  0
 13 22  1  0  0  0  0
  3 23  1  0  0  0  0
  2 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  2  0  0  0  0
 28 27  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 26 32  1  0  0  0  0
 32 33  1  1  0  0  0
  1 33  1  0  0  0  0
 32 34  1  0  0  0  0
 34 35  1  1  0  0  0
 28 35  1  0  0  0  0
 34 36  1  0  0  0  0
 36 37  1  0  0  0  0
 31 37  1  0  0  0  0
 36 38  1  0  0  0  0
 36 39  1  0  0  0  0
 31 40  1  1  0  0  0
 40 41  1  0  0  0  0
 41 42  2  0  0  0  0
 42 43  1  0  0  0  0
 43 44  2  0  0  0  0
 43 45  1  0  0  0  0
 42 46  1  0  0  0  0
M  END

     RDKit          3D

 90 96  0  0  0  0  0  0  0  0999 V2000
    0.2184    4.8367    0.0437 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2432    3.6001    0.8622 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4655    3.3070    1.6436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7931    2.7974    0.8973 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8971    1.5436    1.6649 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1937    0.3738    0.7984 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1712   -0.5075    0.4995 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4868   -1.5947   -0.3164 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7704   -1.7607   -0.7913 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0917   -2.8163   -1.5872 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7841   -0.8533   -0.4725 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4803    0.2152    0.3277 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5075    1.1231    0.6440 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8809    0.7219    0.5240 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.2089   -0.2640    1.6339 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7518    1.9309    0.6596 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0363    0.1187   -0.8323 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4439   -0.3315   -1.1298 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5263   -1.4269   -2.1422 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3395   -1.5566   -3.0153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5068   -1.8641   -4.4534 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1386   -1.3921   -2.4829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1420   -1.0848   -1.0112 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6238   -2.4939   -0.6019 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4132   -3.5064   -1.3380 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9670   -2.2836   -0.0799 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0098   -3.0387   -0.3606 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1980   -2.8079    0.5353 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5999   -2.8972    1.9513 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6331   -1.7739    2.1645 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3623   -0.5881    2.7466 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4527    0.1397    3.7155 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5935   -1.0108    3.5214 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6771    0.2879    1.7176 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4559   -0.3857    0.5276 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2715    0.5154   -0.6696 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4790    1.2724   -0.9708 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2099    1.2486   -2.0569 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4295    2.1379   -2.1303 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9061    0.4106   -3.1656 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9494   -0.3680   -3.2239 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7373    0.4514   -4.2867 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5446   -1.3764    0.3559 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6675   -1.0285    0.0809 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1954   -1.1596    0.8232 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1112   -0.3177    0.9898 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7009    5.7042    0.5796 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8293    4.7206   -0.8934 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7977    5.1626   -0.2172 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3486    3.7046    2.6954 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7451    2.2572    1.7010 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3387    3.9038    1.2433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6752    3.0702    0.3041 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7130    1.6330    2.4443 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0251    1.3595    2.2328 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6552   -3.5786   -1.9731 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3635   -0.3113    2.3808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3604   -1.2839    1.2766 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0944    0.0298    2.2186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6710    1.6217    1.2217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2382    2.6936    1.2789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0123    2.2850   -0.3542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7929    0.9186   -1.5751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8619   -0.7313   -0.1653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0996    0.5127   -1.4356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4594   -1.2890   -2.7402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6491   -2.4265   -1.6345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5834   -1.5572   -5.0190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6043   -2.9540   -4.6120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3367   -1.2818   -4.9017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2663   -1.4779   -3.0847 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6390   -1.9434   -0.5145 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0979   -3.7717   -1.1302 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0052   -3.5054    0.3733 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3754   -3.0096    2.7123 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0026   -3.8516    1.9515 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7414   -2.0696    2.7517 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7057   -0.1674    4.7682 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5652    1.2256    3.6967 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3894   -0.1285    3.5104 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9216   -0.0874    4.0788 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4388   -1.2835    2.8855 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3114   -1.7327    4.2952 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5081    1.2787   -0.3261 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8218   -0.0776   -1.4528 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8351    1.9701   -0.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5084    2.6327   -3.1156 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3504    1.5584   -1.9029 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3520    2.9265   -1.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6918    0.8072   -4.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  1
 14 16  1  0
 14 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 20 22  2  0
 22 23  1  0
 23 11  1  0
 11  9  1  0
  9 10  1  0
  9  8  2  0
  8  7  1  0
  7 46  1  0
 45 46  1  1
 45 30  1  0
 30 29  1  0
 29 28  1  0
 28 27  1  0
 27 26  2  0
 26 24  1  0
 24 25  2  0
 28 43  1  0
 43 44  2  0
 43 35  1  0
 35 36  1  6
 36 37  1  0
 37 38  2  0
 38 39  1  0
 38 40  1  0
 40 42  1  0
 40 41  2  0
 35 34  1  0
 34 31  1  0
 31 32  1  1
 31 33  1  0
  7  6  2  0
 26 45  1  0
 11 12  2  0
 24  8  1  0
 23 17  1  0
 35 45  1  0
 31 30  1  0
  1 47  1  0
  1 48  1  0
  1 49  1  0
  3 50  1  0
  3 51  1  0
  3 52  1  0
  4 53  1  0
  5 54  1  0
  5 55  1  0
 15 57  1  0
 15 58  1  0
 15 59  1  0
 16 60  1  0
 16 61  1  0
 16 62  1  0
 17 63  1  6
 18 64  1  0
 18 65  1  0
 19 66  1  0
 19 67  1  0
 21 68  1  0
 21 69  1  0
 21 70  1  0
 22 71  1  0
 23 72  1  1
 10 56  1  0
 30 77  1  1
 29 75  1  0
 29 76  1  0
 28 74  1  1
 27 73  1  0
 36 84  1  0
 36 85  1  0
 37 86  1  0
 39 87  1  0
 39 88  1  0
 39 89  1  0
 42 90  1  0
 32 78  1  0
 32 79  1  0
 32 80  1  0
 33 81  1  0
 33 82  1  0
 33 83  1  0
M  END


  Mrv1652304292204192D          

 46 52  0  0  1  0            999 V2000
    4.8782   -0.0211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2209   -0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0421   -0.8501    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5208   -0.1781    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1781    0.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3569    0.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1761    1.5181    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4173    2.3302    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8499    2.9291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0849    3.7200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0476    2.7372    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6567    1.2443    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4780    1.1658    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8206    0.4153    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.3420   -0.2566    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.6846   -1.0071    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5059   -1.0856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9845   -0.4136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6419    0.3368    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9563   -1.8446    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7078    2.0270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1809    1.7131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3069   -1.6927    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7908   -1.5070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0795   -2.3483    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9594   -1.3308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6634   -2.1288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8549   -1.9251    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0933   -1.5868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3905   -2.0723    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4232   -0.7859    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4078   -0.6258    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0306   -0.0059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7632   -0.1761    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9525   -1.0847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0678    0.3148    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6459   -0.4027    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8638    1.2350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2404    0.6263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8300    0.0912    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2651    0.8946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8332    1.5976    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0085    1.5750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4107    1.0064    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5766    2.2779    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2260    2.3230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
  5 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15  4  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 14 19  1  6  0  0  0
 17 20  1  0  0  0  0
 13 21  1  0  0  0  0
 13 22  1  0  0  0  0
  3 23  1  0  0  0  0
  2 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  2  0  0  0  0
 28 27  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 26 32  1  0  0  0  0
 32 33  1  1  0  0  0
  1 33  1  0  0  0  0
 32 34  1  0  0  0  0
 34 35  1  1  0  0  0
 28 35  1  0  0  0  0
 34 36  1  0  0  0  0
 36 37  1  0  0  0  0
 31 37  1  0  0  0  0
 36 38  1  0  0  0  0
 36 39  1  0  0  0  0
 31 40  1  1  0  0  0
 40 41  1  0  0  0  0
 41 42  2  0  0  0  0
 42 43  1  0  0  0  0
 43 44  2  0  0  0  0
 43 45  1  0  0  0  0
 42 46  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0081348

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC1=C2OC(C)(C)[C@@H]3CCC(C)=C[C@H]3C2=C(O)C2=C1O[C@@]13[C@H]4C[C@@H](C=C1C2=O)C(=O)[C@]3(C\C=C(\C)C(O)=O)OC4(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C38H44O8/c1-18(2)9-11-22-31-27(23-15-19(3)10-12-24(23)35(5,6)44-31)30(40)28-29(39)25-16-21-17-26-36(7,8)46-37(33(21)41,14-13-20(4)34(42)43)38(25,26)45-32(22)28/h9,13,15-16,21,23-24,26,40H,10-12,14,17H2,1-8H3,(H,42,43)/b20-13-/t21-,23-,24-,26+,37+,38-/m1/s1

> <INCHI_KEY>
FJRORJDZZLUAPP-LLYQEQCZSA-N

> <FORMULA>
C38H44O8

> <MOLECULAR_WEIGHT>
628.762

> <EXACT_MASS>
628.303618377

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
90

> <JCHEM_AVERAGE_POLARIZABILITY>
68.54099984286405

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2Z)-4-[(1S,2S,9R,14R,21S,23R)-16-hydroxy-8,8,12,25,25-pentamethyl-5-(3-methylbut-2-en-1-yl)-18,22-dioxo-3,7,24-trioxaheptacyclo[19.4.1.0^{2,19}.0^{2,23}.0^{4,17}.0^{6,15}.0^{9,14}]hexacosa-4(17),5,12,15,19-pentaen-23-yl]-2-methylbut-2-enoic acid

> <ALOGPS_LOGP>
5.45

> <JCHEM_LOGP>
7.128246305333335

> <ALOGPS_LOGS>
-5.88

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
8.450838704476704

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.7468218068365284

> <JCHEM_PKA_STRONGEST_BASIC>
-4.133328663441943

> <JCHEM_POLAR_SURFACE_AREA>
119.36

> <JCHEM_REFRACTIVITY>
176.29200000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.31e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2Z)-4-[(1S,2S,9R,14R,21S,23R)-16-hydroxy-8,8,12,25,25-pentamethyl-5-(3-methylbut-2-en-1-yl)-18,22-dioxo-3,7,24-trioxaheptacyclo[19.4.1.0^{2,19}.0^{2,23}.0^{4,17}.0^{6,15}.0^{9,14}]hexacosa-4(17),5,12,15,19-pentaen-23-yl]-2-methylbut-2-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-APR-22         0                                  
HETATM    1  C   UNK     0       9.106  -0.039   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.746  -1.440   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.279  -1.587   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      12.172  -0.332   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      11.532   1.068   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.999   1.215   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.662   2.834   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.112   4.350   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.053   5.468   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.492   6.944   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.555   5.109   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      12.426   2.323   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      13.959   2.176   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      14.599   0.775   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.705  -0.479   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      14.345  -1.880   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      15.878  -2.026   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      16.771  -0.772   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      16.132   0.629   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      16.718  -3.443   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      14.388   3.784   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      15.271   3.198   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      11.773  -3.160   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       8.943  -2.813   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       9.482  -4.384   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       7.391  -2.484   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.838  -3.974   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.329  -3.593   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.907  -2.962   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       2.596  -3.868   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       4.523  -1.467   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       6.361  -1.168   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       7.524  -0.011   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       5.158  -0.329   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       5.511  -2.025   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       3.860   0.588   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       3.072  -0.752   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0       3.479   2.305   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       2.315   1.169   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       5.283   0.170   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       6.095   1.670   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       5.289   2.982   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       3.749   2.940   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0       2.633   1.879   0.000  0.00  0.00           O+0
HETATM   45  O   UNK     0       2.943   4.252   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0       6.022   4.336   0.000  0.00  0.00           C+0
CONECT    1    2    6   33                                                  
CONECT    2    1    3   24                                                  
CONECT    3    2    4   23                                                  
CONECT    4    3    5   15                                                  
CONECT    5    4    6   12                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    5   13                                                       
CONECT   13   12   14   21   22                                             
CONECT   14   13   15   19                                                  
CONECT   15   14    4   16                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   20                                                  
CONECT   18   17   19                                                       
CONECT   19   18   14                                                       
CONECT   20   17                                                            
CONECT   21   13                                                            
CONECT   22   13                                                            
CONECT   23    3                                                            
CONECT   24    2   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   32                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   35                                                  
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   37   40                                             
CONECT   32   31   26   33   34                                             
CONECT   33   32    1                                                       
CONECT   34   32   35   36                                                  
CONECT   35   34   28                                                       
CONECT   36   34   37   38   39                                             
CONECT   37   36   31                                                       
CONECT   38   36                                                            
CONECT   39   36                                                            
CONECT   40   31   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43   46                                                  
CONECT   43   42   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43                                                            
CONECT   46   42                                                            
MASTER        0    0    0    0    0    0    0    0   46    0  104    0
END

View in JSmol

Synonyms

Value	Source
(2Z)-4-[(1S,2S,9R,14R,21S,23R)-16-Hydroxy-8,8,12,25,25-pentamethyl-5-(3-methylbut-2-en-1-yl)-18,22-dioxo-3,7,24-trioxaheptacyclo[19.4.1.0,.0,.0,.0,.0,]hexacosa-4(17),5,12,15,19-pentaen-23-yl]-2-methylbut-2-enoate	Generator

Chemical Formula

C₃₈H₄₄O₈

Average Mass

628.7620 Da

Monoisotopic Mass

628.30362 Da

IUPAC Name

(2Z)-4-[(1S,2S,9R,14R,21S,23R)-16-hydroxy-8,8,12,25,25-pentamethyl-5-(3-methylbut-2-en-1-yl)-18,22-dioxo-3,7,24-trioxaheptacyclo[19.4.1.0^{2,19}.0^{2,23}.0^{4,17}.0^{6,15}.0^{9,14}]hexacosa-4(17),5,12,15,19-pentaen-23-yl]-2-methylbut-2-enoic acid

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(C)=CCC1=C2OC(C)(C)[C@@H]3CCC(C)=C[C@H]3C2=C(O)C2=C1O[C@@]13[C@H]4C[C@@H](C=C1C2=O)C(=O)[C@]3(C\C=C(\C)C(O)=O)OC4(C)C

InChI Identifier

InChI=1S/C38H44O8/c1-18(2)9-11-22-31-27(23-15-19(3)10-12-24(23)35(5,6)44-31)30(40)28-29(39)25-16-21-17-26-36(7,8)46-37(33(21)41,14-13-20(4)34(42)43)38(25,26)45-32(22)28/h9,13,15-16,21,23-24,26,40H,10-12,14,17H2,1-8H3,(H,42,43)/b20-13-/t21-,23-,24-,26+,37+,38-/m1/s1

InChI Key

FJRORJDZZLUAPP-LLYQEQCZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Garcinia hanburyi	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyranoxanthones. These are organic aromatic compounds containing a pyran or a hydrogenated derivative fused to a xanthone ring system.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Pyranoxanthones

Alternative Parents

Substituents

Pyranoxanthone
Pyranochromene
2,2-dimethyl-1-benzopyran
Chromone
Monoterpenoid
Aromatic monoterpenoid
Aryl ketone
Cyclohexenone
Oxepane
Alkyl aryl ether
Benzenoid
Vinylogous acid
Tetrahydrofuran
Ketone
Oxacycle
Monocarboxylic acid or derivatives
Ether
Dialkyl ether
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.45	ALOGPS
logP	7.13	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	3.75	ChemAxon
pKa (Strongest Basic)	-4.1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	119.36 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	176.29 m³·mol⁻¹	ChemAxon
Polarizability	68.54 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163011840

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (-)-Gambogefic acid (NP0081348)

MOL for NP0081348 ((-)-Gambogefic acid)

3D MOL for NP0081348 ((-)-Gambogefic acid)

3D SDF for NP0081348 ((-)-Gambogefic acid)

3D-SDF for NP0081348 ((-)-Gambogefic acid)

PDB for NP0081348 ((-)-Gambogefic acid)

3D PDB for NP0081348 ((-)-Gambogefic acid)

SMILES for NP0081348 ((-)-Gambogefic acid)

INCHI for NP0081348 ((-)-Gambogefic acid)

Structure for NP0081348 ((-)-Gambogefic acid)

3D Structure for NP0081348 ((-)-Gambogefic acid)